Wall clock time and date at job start Mon Mar 30 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47063 * 2 1 4 4 C 1.50697 * 109.47783 * 240.00100 * 2 1 3 5 5 H 1.07999 * 120.00248 * 240.00105 * 4 2 1 6 6 C 1.37880 * 119.99925 * 59.99375 * 4 2 1 7 7 N 1.31522 * 119.99769 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00118 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47024 * 90.00305 * 8 6 4 10 10 H 1.48506 * 109.47429 * 210.00328 * 8 6 4 11 11 H 1.48504 * 109.47507 * 330.00424 * 8 6 4 12 12 N 1.46903 * 109.47197 * 119.99939 * 2 1 3 13 13 C 1.46905 * 111.00087 * 271.13287 * 12 2 1 14 14 H 1.09003 * 109.21642 * 33.90850 * 13 12 2 15 15 C 1.52729 * 109.25445 * 274.45529 * 13 12 2 16 16 C 1.53321 * 108.38715 * 188.51260 * 15 13 12 17 17 C 1.52726 * 108.40268 * 69.78012 * 16 15 13 18 18 C 1.50616 * 110.60061 * 308.92425 * 17 16 15 19 19 C 1.39406 * 117.76649 * 197.61556 * 18 17 16 20 20 O 1.35903 * 119.78494 * 0.65969 * 19 18 17 21 21 C 1.38433 * 120.42682 * 180.64103 * 19 18 17 22 22 C 1.38169 * 119.71072 * 0.02562 * 21 19 18 23 23 C 1.37958 * 119.83669 * 0.13097 * 22 21 19 24 24 C 1.37567 * 122.58851 * 17.99159 * 18 17 16 25 25 H 1.08997 * 109.47608 * 294.52984 * 1 2 3 26 26 H 1.09001 * 109.47205 * 54.53594 * 1 2 3 27 27 H 1.09011 * 109.46566 * 174.53053 * 1 2 3 28 28 H 0.97001 * 119.99985 * 179.97438 * 7 6 4 29 29 H 1.00897 * 111.00273 * 35.08747 * 12 2 1 30 30 H 1.08996 * 109.68268 * 308.24406 * 15 13 12 31 31 H 1.09003 * 109.68025 * 68.79205 * 15 13 12 32 32 H 1.09006 * 109.67839 * 189.50381 * 16 15 13 33 33 H 1.08994 * 109.68085 * 310.00931 * 16 15 13 34 34 H 1.09002 * 109.24554 * 188.63791 * 17 16 15 35 35 H 1.08996 * 109.25344 * 69.21759 * 17 16 15 36 36 H 0.96704 * 113.99953 * 269.97943 * 20 19 18 37 37 H 1.07995 * 120.14723 * 180.02562 * 21 19 18 38 38 H 1.08002 * 120.08682 * 179.86227 * 22 21 19 39 39 H 1.07997 * 119.67694 * 179.71307 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3215 -1.1202 -4.0078 9 1 1.3430 -2.1616 -4.4118 10 1 2.4868 -0.1412 -5.1122 11 1 3.6296 -1.7581 -3.7121 12 7 2.0196 -0.6925 1.1995 13 6 2.1696 0.2423 2.3227 14 1 1.3934 1.0051 2.2608 15 6 3.5404 0.9109 2.2421 16 6 3.7629 1.7146 3.5286 17 6 3.9494 0.7334 4.6840 18 6 2.8329 -0.2773 4.7063 19 6 2.6338 -0.9992 5.8821 20 8 3.4281 -0.7663 6.9600 21 6 1.6320 -1.9514 5.9590 22 6 0.8254 -2.1870 4.8622 23 6 1.0251 -1.4746 3.6978 24 6 2.0233 -0.5111 3.6189 25 1 -0.3634 0.4266 0.9349 26 1 -0.3634 0.5962 -0.8370 27 1 -0.3633 -1.0231 -0.0980 28 1 0.7094 1.1618 -3.4844 29 1 1.4135 -1.4603 1.4465 30 1 4.3148 0.1500 2.1459 31 1 3.5728 1.5791 1.3815 32 1 4.6543 2.3335 3.4252 33 1 2.8968 2.3479 3.7202 34 1 3.9552 1.2834 5.6251 35 1 4.9010 0.2152 4.5654 36 1 4.2230 -1.3163 6.9890 37 1 1.4814 -2.5078 6.8724 38 1 0.0434 -2.9301 4.9148 39 1 0.3962 -1.6641 2.8405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191283173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:09 Heat of formation + Delta-G solvation = -28.566407 kcal Electronic energy + Delta-G solvation = -19818.342363 eV Core-core repulsion = 16918.167481 eV Total energy + Delta-G solvation = -2900.174882 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.31996 -37.68248 -35.84511 -35.03690 -32.59746 -30.34172 -30.08977 -28.33271 -26.55119 -25.11827 -23.09533 -22.68498 -21.52096 -19.93858 -19.25909 -17.94279 -16.45776 -15.96096 -15.77058 -15.45612 -14.73471 -14.43062 -14.06656 -13.77895 -13.62409 -12.93327 -12.75495 -12.37077 -12.18836 -12.04445 -11.72994 -11.71913 -11.37209 -10.98603 -10.92674 -10.87589 -10.68386 -10.45501 -10.32355 -10.12409 -9.95805 -9.68116 -8.97642 -8.53493 -8.40683 -8.35386 -7.21758 -5.97631 -4.00079 1.34639 1.45826 3.33176 3.39655 3.44357 3.69850 4.25874 4.45134 4.80805 4.85176 5.07489 5.14835 5.24505 5.34239 5.41091 5.48582 5.52942 5.66407 5.81869 5.92487 5.97706 6.08683 6.13957 6.23045 6.25125 6.47674 6.52745 6.67221 6.69512 6.75503 6.82583 6.87408 6.93428 7.09161 7.37285 7.65835 7.71906 7.90347 8.27451 8.53964 8.61067 9.07155 9.65100 11.09820 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030521 B = 0.005023 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.189083 B = 5572.722868 C = 5974.786296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.035 0.965 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.678 5.678 13 C 0.124 3.876 14 H 0.050 0.950 15 C -0.104 4.104 16 C -0.120 4.120 17 C -0.073 4.073 18 C -0.096 4.096 19 C 0.095 3.905 20 O -0.499 6.499 21 C -0.153 4.153 22 C -0.107 4.107 23 C -0.125 4.125 24 C -0.046 4.046 25 H 0.004 0.996 26 H 0.086 0.914 27 H 0.030 0.970 28 H 0.259 0.741 29 H 0.327 0.673 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.385 0.615 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.168 -2.397 15.641 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.053 0.947 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.310 5.310 13 C 0.015 3.985 14 H 0.068 0.932 15 C -0.142 4.142 16 C -0.158 4.158 17 C -0.110 4.110 18 C -0.097 4.097 19 C 0.051 3.949 20 O -0.308 6.308 21 C -0.172 4.172 22 C -0.126 4.126 23 C -0.143 4.143 24 C -0.047 4.047 25 H 0.023 0.977 26 H 0.105 0.895 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.240 0.760 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.324 -1.826 15.432 15.891 hybrid contribution -0.466 -0.721 -0.741 1.134 sum 2.857 -2.547 14.691 15.181 Atomic orbital electron populations 1.22437 1.00694 1.00144 0.99417 1.19245 0.89516 0.94431 0.86522 0.94749 1.21148 1.30157 1.12360 0.89503 0.91954 1.24949 0.95379 0.95194 0.99006 1.69898 1.37437 1.23170 1.23297 0.86521 0.79234 0.79237 0.82525 1.20889 1.21417 1.19902 1.61015 1.56012 1.10497 1.03468 1.20334 0.97221 0.93767 0.87227 0.93243 1.21532 0.97037 0.99063 0.96556 1.21585 1.01692 0.97560 0.94999 1.20321 0.95831 0.95429 0.99444 1.19895 0.98406 0.99233 0.92125 1.18431 0.93879 0.96324 0.86251 1.84787 1.37772 1.65159 1.43126 1.21230 0.97837 0.98870 0.99239 1.20886 0.99264 0.99702 0.92715 1.21247 0.98423 0.96481 0.98153 1.19832 0.94075 0.95830 0.94976 0.97717 0.89516 0.95101 0.93123 0.85374 0.91042 0.91135 0.91523 0.92015 0.90762 0.90998 0.76003 0.85903 0.85826 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 8.84 37.16 0.33 -3.66 16 2 C 0.21 5.20 2.35 -68.87 -0.16 5.04 16 3 H 0.03 0.93 7.23 -51.93 -0.38 0.56 16 4 C -0.49 -13.52 8.84 -34.44 -0.30 -13.83 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.56 11.38 55.43 0.63 -24.92 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.68 -14.25 6.04 -102.35 -0.62 -14.86 16 13 C 0.12 2.26 2.34 -69.03 -0.16 2.10 16 14 H 0.05 0.97 7.37 -51.93 -0.38 0.58 16 15 C -0.10 -1.75 5.41 -26.70 -0.14 -1.90 16 16 C -0.12 -1.64 5.98 -26.71 -0.16 -1.80 16 17 C -0.07 -0.94 5.28 -28.06 -0.15 -1.09 16 18 C -0.10 -1.40 5.75 -104.47 -0.60 -2.00 16 19 C 0.10 1.27 6.66 -39.07 -0.26 1.01 16 20 O -0.50 -5.63 12.53 -19.44 -0.24 -5.87 16 21 C -0.15 -1.92 9.98 -39.54 -0.39 -2.32 16 22 C -0.11 -1.39 10.04 -39.71 -0.40 -1.79 16 23 C -0.12 -1.88 8.85 -39.42 -0.35 -2.23 16 24 C -0.05 -0.75 5.56 -104.63 -0.58 -1.33 16 25 H 0.00 0.08 7.70 -51.93 -0.40 -0.32 16 26 H 0.09 2.28 6.24 -51.93 -0.32 1.96 16 27 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.33 6.53 5.70 -39.29 -0.22 6.31 16 30 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.07 1.29 7.64 -51.93 -0.40 0.90 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 34 H 0.07 0.90 7.75 -51.93 -0.40 0.49 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.38 2.59 9.06 45.56 0.41 3.00 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.13 1.91 6.50 -52.49 -0.34 1.56 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -29.70 310.04 -8.94 -38.65 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.93 Total: 8.27 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -3.43 Total: -22.37 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.01 Total: -39.79 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.24 Total: -5.87 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.70 -8.94 -38.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191283173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.081 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds