Wall clock time and date at job start Mon Mar 30 2020 06:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47063 * 2 1 4 4 C 1.50697 * 109.47783 * 240.00100 * 2 1 3 5 5 H 1.07999 * 120.00248 * 240.00105 * 4 2 1 6 6 C 1.37880 * 119.99925 * 59.99375 * 4 2 1 7 7 N 1.31522 * 119.99769 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00118 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47024 * 90.00305 * 8 6 4 10 10 H 1.48506 * 109.47429 * 210.00328 * 8 6 4 11 11 H 1.48504 * 109.47507 * 330.00424 * 8 6 4 12 12 N 1.46903 * 109.47197 * 119.99939 * 2 1 3 13 13 C 1.46905 * 111.00087 * 271.13287 * 12 2 1 14 14 H 1.09003 * 109.21642 * 33.90850 * 13 12 2 15 15 C 1.52729 * 109.25445 * 274.45529 * 13 12 2 16 16 C 1.53321 * 108.38715 * 188.51260 * 15 13 12 17 17 C 1.52726 * 108.40268 * 69.78012 * 16 15 13 18 18 C 1.50616 * 110.60061 * 308.92425 * 17 16 15 19 19 C 1.39406 * 117.76649 * 197.61556 * 18 17 16 20 20 O 1.35903 * 119.78494 * 0.65969 * 19 18 17 21 21 C 1.38433 * 120.42682 * 180.64103 * 19 18 17 22 22 C 1.38169 * 119.71072 * 0.02562 * 21 19 18 23 23 C 1.37958 * 119.83669 * 0.13097 * 22 21 19 24 24 C 1.37567 * 122.58851 * 17.99159 * 18 17 16 25 25 H 1.08997 * 109.47608 * 294.52984 * 1 2 3 26 26 H 1.09001 * 109.47205 * 54.53594 * 1 2 3 27 27 H 1.09011 * 109.46566 * 174.53053 * 1 2 3 28 28 H 0.97001 * 119.99985 * 179.97438 * 7 6 4 29 29 H 1.00897 * 111.00273 * 35.08747 * 12 2 1 30 30 H 1.08996 * 109.68268 * 308.24406 * 15 13 12 31 31 H 1.09003 * 109.68025 * 68.79205 * 15 13 12 32 32 H 1.09006 * 109.67839 * 189.50381 * 16 15 13 33 33 H 1.08994 * 109.68085 * 310.00931 * 16 15 13 34 34 H 1.09002 * 109.24554 * 188.63791 * 17 16 15 35 35 H 1.08996 * 109.25344 * 69.21759 * 17 16 15 36 36 H 0.96704 * 113.99953 * 269.97943 * 20 19 18 37 37 H 1.07995 * 120.14723 * 180.02562 * 21 19 18 38 38 H 1.08002 * 120.08682 * 179.86227 * 22 21 19 39 39 H 1.07997 * 119.67694 * 179.71307 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3215 -1.1202 -4.0078 9 1 1.3430 -2.1616 -4.4118 10 1 2.4868 -0.1412 -5.1122 11 1 3.6296 -1.7581 -3.7121 12 7 2.0196 -0.6925 1.1995 13 6 2.1696 0.2423 2.3227 14 1 1.3934 1.0051 2.2608 15 6 3.5404 0.9109 2.2421 16 6 3.7629 1.7146 3.5286 17 6 3.9494 0.7334 4.6840 18 6 2.8329 -0.2773 4.7063 19 6 2.6338 -0.9992 5.8821 20 8 3.4281 -0.7663 6.9600 21 6 1.6320 -1.9514 5.9590 22 6 0.8254 -2.1870 4.8622 23 6 1.0251 -1.4746 3.6978 24 6 2.0233 -0.5111 3.6189 25 1 -0.3634 0.4266 0.9349 26 1 -0.3634 0.5962 -0.8370 27 1 -0.3633 -1.0231 -0.0980 28 1 0.7094 1.1618 -3.4844 29 1 1.4135 -1.4603 1.4465 30 1 4.3148 0.1500 2.1459 31 1 3.5728 1.5791 1.3815 32 1 4.6543 2.3335 3.4252 33 1 2.8968 2.3479 3.7202 34 1 3.9552 1.2834 5.6251 35 1 4.9010 0.2152 4.5654 36 1 4.2230 -1.3163 6.9890 37 1 1.4814 -2.5078 6.8724 38 1 0.0434 -2.9301 4.9148 39 1 0.3962 -1.6641 2.8405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191283173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:08 Heat of formation + Delta-G solvation = -47.786899 kcal Electronic energy + Delta-G solvation = -19819.175826 eV Core-core repulsion = 16918.167481 eV Total energy + Delta-G solvation = -2901.008345 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.43108 -38.89243 -37.10499 -36.44293 -34.43351 -31.89729 -31.22538 -29.61200 -28.07305 -27.22754 -24.29961 -23.86973 -22.82848 -21.68446 -20.43417 -19.07753 -18.22946 -17.22611 -16.95918 -16.82053 -16.35578 -15.90900 -15.39542 -15.10604 -14.72060 -14.48981 -14.32476 -13.74296 -13.59083 -13.39448 -13.21070 -13.05190 -12.83305 -12.77824 -12.55930 -12.33637 -12.19953 -11.98943 -11.95637 -11.78251 -11.48267 -10.98136 -10.94090 -10.48436 -9.70743 -9.43275 -8.91763 -8.09221 -6.19708 0.30307 0.38754 1.42985 1.43654 1.54809 2.44277 2.66204 3.19381 3.30725 3.60588 3.70973 3.76821 4.08571 4.13808 4.20815 4.32382 4.41277 4.51886 4.54629 4.71015 4.71866 4.84420 4.94102 4.95816 5.00765 5.03390 5.12412 5.12740 5.30448 5.37791 5.46403 5.48274 5.55350 5.68254 5.70520 5.81532 5.93063 6.27114 6.64727 6.81608 6.89744 6.94353 7.50040 8.96733 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030521 B = 0.005023 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.189083 B = 5572.722868 C = 5974.786296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.218 3.782 3 H 0.003 0.997 4 C -0.512 4.512 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.680 5.680 13 C 0.128 3.872 14 H 0.029 0.971 15 C -0.101 4.101 16 C -0.113 4.113 17 C -0.068 4.068 18 C -0.108 4.108 19 C 0.100 3.900 20 O -0.501 6.501 21 C -0.149 4.149 22 C -0.103 4.103 23 C -0.143 4.143 24 C -0.068 4.068 25 H 0.022 0.978 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.332 0.668 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.407 0.593 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.849 -3.559 17.531 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.109 3.891 3 H 0.021 0.979 4 C -0.551 4.551 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.312 5.312 13 C 0.018 3.982 14 H 0.046 0.954 15 C -0.139 4.139 16 C -0.151 4.151 17 C -0.105 4.105 18 C -0.109 4.109 19 C 0.055 3.945 20 O -0.313 6.313 21 C -0.168 4.168 22 C -0.121 4.121 23 C -0.162 4.162 24 C -0.069 4.069 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.152 0.848 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.266 0.734 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.021 -3.001 17.344 18.055 hybrid contribution -0.660 -0.368 -1.223 1.437 sum 3.362 -3.369 16.121 16.809 Atomic orbital electron populations 1.22231 1.00072 0.99795 0.99179 1.18966 0.89846 0.92712 0.87542 0.97926 1.21419 1.30367 1.12338 0.90953 0.92850 1.25709 0.95487 0.95849 1.01836 1.70026 1.38157 1.24233 1.23938 0.85523 0.78770 0.78212 0.78884 1.20115 1.20995 1.19582 1.60902 1.55669 1.11034 1.03604 1.20279 0.97168 0.93037 0.87712 0.95366 1.21474 0.96155 0.98701 0.97592 1.21538 1.02470 0.97544 0.93507 1.20327 0.95888 0.94971 0.99316 1.20092 0.98576 0.99978 0.92244 1.18468 0.94223 0.95744 0.86030 1.84735 1.38742 1.65947 1.41916 1.21567 0.96859 0.98388 0.99956 1.21160 0.99667 0.99449 0.91852 1.21280 0.98576 0.97276 0.99025 1.19657 0.95878 0.96955 0.94416 0.95913 0.92140 0.94844 0.93054 0.84810 0.91725 0.93739 0.89444 0.92443 0.89361 0.89629 0.73401 0.83175 0.83259 0.86636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.52 8.84 71.98 0.64 -6.89 16 2 C 0.22 11.21 2.35 44.17 0.10 11.31 16 3 H 0.00 0.16 7.23 -2.39 -0.02 0.14 16 4 C -0.51 -28.82 8.84 25.60 0.23 -28.60 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.52 5.30 84.65 0.45 0.97 16 7 N -0.92 -53.72 11.38 21.45 0.24 -53.48 16 8 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.68 -29.58 6.04 -477.71 -2.89 -32.47 16 13 C 0.13 4.81 2.34 44.06 0.10 4.91 16 14 H 0.03 1.17 7.37 -2.39 -0.02 1.15 16 15 C -0.10 -3.52 5.41 30.61 0.17 -3.35 16 16 C -0.11 -2.99 5.98 30.61 0.18 -2.80 16 17 C -0.07 -1.61 5.28 29.73 0.16 -1.45 16 18 C -0.11 -2.97 5.75 -19.77 -0.11 -3.08 16 19 C 0.10 2.36 6.66 22.60 0.15 2.52 16 20 O -0.50 -9.40 12.53 -92.46 -1.16 -10.56 16 21 C -0.15 -3.25 9.98 22.30 0.22 -3.03 16 22 C -0.10 -2.43 10.04 22.19 0.22 -2.21 16 23 C -0.14 -4.24 8.85 22.38 0.20 -4.04 16 24 C -0.07 -2.20 5.56 -19.87 -0.11 -2.31 16 25 H 0.02 0.98 7.70 -2.39 -0.02 0.96 16 26 H 0.06 3.29 6.24 -2.39 -0.01 3.27 16 27 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.33 13.64 5.70 -89.70 -0.51 13.13 16 30 H 0.06 2.30 8.10 -2.39 -0.02 2.28 16 31 H 0.04 1.73 7.64 -2.39 -0.02 1.72 16 32 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 34 H 0.09 1.86 7.75 -2.39 -0.02 1.84 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.41 3.82 9.06 -74.05 -0.67 3.15 16 37 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.12 3.55 6.50 -2.91 -0.02 3.53 16 Total: -1.00 -64.57 310.04 0.70 -63.87 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -0.12 Total: 24.28 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 2.59 Total: -38.06 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -2.64 Total: -85.95 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -1.16 Total: -10.56 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -64.57 0.70 -63.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191283173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.085 kcal (2) G-P(sol) polarization free energy of solvation -64.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds