Wall clock time and date at job start Mon Mar 30 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47361 * 2 1 4 4 C 1.50708 * 109.46959 * 119.99921 * 2 1 3 5 5 H 1.07999 * 119.99803 * 114.31612 * 4 2 1 6 6 C 1.37875 * 119.99938 * 294.32672 * 4 2 1 7 7 N 1.31520 * 119.99875 * 347.23569 * 6 4 2 8 8 Si 1.86799 * 120.00002 * 167.23871 * 6 4 2 9 9 H 1.48497 * 109.46867 * 59.99786 * 8 6 4 10 10 H 1.48495 * 109.47208 * 299.99926 * 8 6 4 11 11 H 1.48503 * 109.47074 * 179.97438 * 8 6 4 12 12 N 1.46894 * 109.47565 * 239.99616 * 2 1 3 13 13 C 1.46906 * 110.99640 * 89.00080 * 12 2 1 14 14 H 1.08994 * 109.24713 * 328.47781 * 13 12 2 15 15 C 1.52731 * 109.24651 * 87.90443 * 13 12 2 16 16 C 1.53329 * 108.39420 * 171.34648 * 15 13 12 17 17 C 1.52735 * 108.36823 * 290.15928 * 16 15 13 18 18 C 1.50619 * 110.58184 * 51.13037 * 17 16 15 19 19 C 1.39400 * 117.75501 * 162.50016 * 18 17 16 20 20 O 1.35900 * 119.78414 * 359.43641 * 19 18 17 21 21 C 1.38431 * 120.42682 * 179.41167 * 19 18 17 22 22 C 1.38172 * 119.70847 * 0.02829 * 21 19 18 23 23 C 1.37957 * 119.83506 * 0.12538 * 22 21 19 24 24 C 1.37576 * 122.59037 * 342.16413 * 18 17 16 25 25 H 1.08994 * 109.47187 * 294.35360 * 1 2 3 26 26 H 1.08997 * 109.46660 * 54.35245 * 1 2 3 27 27 H 1.09001 * 109.47074 * 174.35201 * 1 2 3 28 28 H 0.96997 * 120.00301 * 1.83684 * 7 6 4 29 29 H 1.00905 * 111.00054 * 325.05374 * 12 2 1 30 30 H 1.08995 * 109.67792 * 291.06794 * 15 13 12 31 31 H 1.08994 * 109.68228 * 51.62237 * 15 13 12 32 32 H 1.08999 * 109.68093 * 170.43873 * 16 15 13 33 33 H 1.09004 * 109.68332 * 49.87926 * 16 15 13 34 34 H 1.08998 * 109.25337 * 290.84265 * 17 16 15 35 35 H 1.09003 * 109.22360 * 171.39447 * 17 16 15 36 36 H 0.96701 * 113.99922 * 90.00077 * 20 19 18 37 37 H 1.08001 * 120.14921 * 180.02562 * 21 19 18 38 38 H 1.07997 * 120.08275 * 180.15043 * 22 21 19 39 39 H 1.07996 * 119.66772 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5754 -1.6389 1.1341 6 6 1.7984 -0.1751 2.4794 7 7 1.3666 1.0619 2.5942 8 14 2.0947 -1.2067 4.0083 9 1 3.5197 -1.6215 4.0569 10 1 1.2293 -2.4127 3.9671 11 1 1.7712 -0.4057 5.2162 12 7 2.0198 -0.6925 -1.1993 13 6 2.1727 0.2429 -2.3217 14 1 1.4248 1.0311 -2.2369 15 6 3.5667 0.8649 -2.2723 16 6 3.7855 1.6650 -3.5618 17 6 3.9128 0.6811 -4.7230 18 6 2.7627 -0.2915 -4.7214 19 6 2.5143 -1.0050 -5.8930 20 8 3.2939 -0.7992 -6.9869 21 6 1.4789 -1.9221 -5.9490 22 6 0.6871 -2.1299 -4.8359 23 6 0.9315 -1.4212 -3.6778 24 6 1.9686 -0.4983 -3.6172 25 1 -0.3633 0.4237 0.9362 26 1 -0.3632 0.5989 -0.8351 27 1 -0.3633 -1.0227 -0.1011 28 1 1.1873 1.5888 1.7998 29 1 1.4124 -1.4590 -1.4477 30 1 3.6421 1.5288 -1.4112 31 1 4.3173 0.0782 -2.1967 32 1 4.6988 2.2541 -3.4779 33 1 2.9358 2.3262 -3.7323 34 1 4.8489 0.1310 -4.6270 35 1 3.9152 1.2333 -5.6628 36 1 4.0685 -1.3765 -7.0320 37 1 1.2907 -2.4728 -6.8588 38 1 -0.1207 -2.8457 -4.8721 39 1 0.3108 -1.5854 -2.8095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191283189.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:11 Heat of formation + Delta-G solvation = -32.226601 kcal Electronic energy + Delta-G solvation = -19861.210809 eV Core-core repulsion = 16960.877209 eV Total energy + Delta-G solvation = -2900.333600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39118 -37.77275 -35.95806 -35.23016 -32.77070 -30.30280 -30.15017 -28.39506 -26.65769 -24.77449 -23.13680 -22.74515 -21.58781 -20.29962 -19.33149 -18.01578 -16.85166 -16.16894 -15.84047 -15.48385 -14.71557 -14.29273 -13.94523 -13.71388 -13.65921 -13.32829 -12.85487 -12.39777 -12.33427 -12.13153 -11.89462 -11.73662 -11.42973 -11.12385 -11.00156 -10.92930 -10.67276 -10.59103 -10.36370 -10.14250 -10.05987 -9.80583 -8.75816 -8.60119 -8.46708 -8.17090 -7.31923 -6.32218 -3.98645 1.28220 1.39243 3.46959 3.48273 3.63194 3.67201 4.20509 4.54837 4.74751 4.78174 4.97842 5.08000 5.17470 5.32589 5.38833 5.42272 5.46662 5.57727 5.73583 5.83470 5.90822 6.02605 6.06759 6.15463 6.17939 6.36435 6.42253 6.44710 6.49555 6.60569 6.67903 6.74455 6.80757 6.87183 7.03506 7.30473 7.60811 7.92268 8.27985 8.41710 8.67403 8.93356 9.69751 11.04936 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030664 B = 0.005066 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.909818 B = 5525.194821 C = 5970.954491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.199 3.801 3 H 0.027 0.973 4 C -0.579 4.579 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 1.067 2.933 9 H -0.289 1.289 10 H -0.289 1.289 11 H -0.284 1.284 12 N -0.670 5.670 13 C 0.124 3.876 14 H 0.049 0.951 15 C -0.103 4.103 16 C -0.120 4.120 17 C -0.074 4.074 18 C -0.095 4.095 19 C 0.096 3.904 20 O -0.498 6.498 21 C -0.152 4.152 22 C -0.107 4.107 23 C -0.126 4.126 24 C -0.049 4.049 25 H 0.062 0.938 26 H 0.014 0.986 27 H 0.038 0.962 28 H 0.267 0.733 29 H 0.328 0.672 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.385 0.615 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 -3.403 -16.223 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.091 3.909 3 H 0.045 0.955 4 C -0.617 4.617 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.549 5.549 8 Si 0.896 3.104 9 H -0.215 1.215 10 H -0.216 1.216 11 H -0.210 1.210 12 N -0.302 5.302 13 C 0.014 3.986 14 H 0.067 0.933 15 C -0.142 4.142 16 C -0.158 4.158 17 C -0.111 4.111 18 C -0.096 4.096 19 C 0.052 3.948 20 O -0.308 6.308 21 C -0.171 4.171 22 C -0.125 4.125 23 C -0.144 4.144 24 C -0.049 4.049 25 H 0.081 0.919 26 H 0.033 0.967 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.241 0.759 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.461 -2.897 -14.484 14.975 hybrid contribution -0.711 -0.353 -1.873 2.034 sum 1.750 -3.251 -16.357 16.768 Atomic orbital electron populations 1.22561 1.01395 0.99185 1.00053 1.19365 0.88773 0.94582 0.88150 0.95500 1.21866 1.38565 1.10423 0.90892 0.92592 1.25758 0.94805 0.96793 1.01242 1.70823 1.43657 1.07257 1.33190 0.83563 0.76319 0.74989 0.75527 1.21522 1.21565 1.21000 1.60955 1.55786 1.10326 1.03110 1.20371 0.97150 0.93842 0.87258 0.93313 1.21529 0.96773 0.99307 0.96550 1.21590 1.01769 0.97582 0.94890 1.20330 0.95519 0.95770 0.99434 1.19900 0.98257 0.99369 0.92045 1.18428 0.93708 0.96653 0.85993 1.84785 1.40502 1.63547 1.41978 1.21244 0.97538 0.99165 0.99120 1.20885 0.99384 0.99603 0.92620 1.21228 0.98086 0.96810 0.98299 1.19823 0.94114 0.96114 0.94884 0.91886 0.96672 0.94293 0.92173 0.85212 0.91292 0.90982 0.91427 0.92032 0.90927 0.90670 0.75933 0.85806 0.85766 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 8.94 37.16 0.33 -3.62 16 2 C 0.20 4.89 1.99 -68.86 -0.14 4.76 16 3 H 0.03 0.72 6.60 -51.93 -0.34 0.38 16 4 C -0.58 -16.07 8.75 -34.44 -0.30 -16.38 16 5 H 0.06 1.59 7.85 -52.49 -0.41 1.18 16 6 C 0.02 0.50 5.09 -17.82 -0.09 0.41 16 7 N -0.91 -27.03 13.02 55.43 0.72 -26.31 16 8 Si 1.07 25.15 29.92 -169.99 -5.09 20.06 16 9 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.67 -14.12 6.05 -102.35 -0.62 -14.74 16 13 C 0.12 2.25 2.33 -69.03 -0.16 2.08 16 14 H 0.05 0.94 7.43 -51.93 -0.39 0.56 16 15 C -0.10 -1.76 5.45 -26.70 -0.15 -1.91 16 16 C -0.12 -1.64 5.98 -26.70 -0.16 -1.80 16 17 C -0.07 -0.94 5.28 -28.06 -0.15 -1.09 16 18 C -0.09 -1.37 5.75 -104.47 -0.60 -1.97 16 19 C 0.10 1.27 6.66 -39.08 -0.26 1.01 16 20 O -0.50 -5.55 12.53 -19.42 -0.24 -5.80 16 21 C -0.15 -1.89 9.98 -39.53 -0.39 -2.28 16 22 C -0.11 -1.37 10.04 -39.71 -0.40 -1.77 16 23 C -0.13 -1.89 8.80 -39.42 -0.35 -2.23 16 24 C -0.05 -0.78 5.55 -104.63 -0.58 -1.36 16 25 H 0.06 1.58 6.65 -51.93 -0.35 1.24 16 26 H 0.01 0.30 7.83 -51.93 -0.41 -0.11 16 27 H 0.04 0.84 8.01 -51.93 -0.42 0.42 16 28 H 0.27 7.89 6.35 -40.82 -0.26 7.63 16 29 H 0.33 6.55 5.62 -39.29 -0.22 6.33 16 30 H 0.07 1.28 7.81 -51.93 -0.41 0.88 16 31 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.90 7.76 -51.93 -0.40 0.50 16 36 H 0.39 2.54 9.06 45.56 0.41 2.95 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.87 6.58 -52.49 -0.35 1.52 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -30.82 309.59 -8.81 -39.63 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -4.86 Total: 8.64 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -3.39 Total: -26.14 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.10 Total: -41.06 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.24 Total: -5.80 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.09 Total: 20.06 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.82 -8.81 -39.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191283189.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.401 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds