Wall clock time and date at job start Mon Mar 30 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47361 * 2 1 4 4 C 1.50708 * 109.46959 * 119.99921 * 2 1 3 5 5 H 1.07999 * 119.99803 * 114.31612 * 4 2 1 6 6 C 1.37875 * 119.99938 * 294.32672 * 4 2 1 7 7 N 1.31520 * 119.99875 * 347.23569 * 6 4 2 8 8 Si 1.86799 * 120.00002 * 167.23871 * 6 4 2 9 9 H 1.48497 * 109.46867 * 59.99786 * 8 6 4 10 10 H 1.48495 * 109.47208 * 299.99926 * 8 6 4 11 11 H 1.48503 * 109.47074 * 179.97438 * 8 6 4 12 12 N 1.46894 * 109.47565 * 239.99616 * 2 1 3 13 13 C 1.46906 * 110.99640 * 89.00080 * 12 2 1 14 14 H 1.08994 * 109.24713 * 328.47781 * 13 12 2 15 15 C 1.52731 * 109.24651 * 87.90443 * 13 12 2 16 16 C 1.53329 * 108.39420 * 171.34648 * 15 13 12 17 17 C 1.52735 * 108.36823 * 290.15928 * 16 15 13 18 18 C 1.50619 * 110.58184 * 51.13037 * 17 16 15 19 19 C 1.39400 * 117.75501 * 162.50016 * 18 17 16 20 20 O 1.35900 * 119.78414 * 359.43641 * 19 18 17 21 21 C 1.38431 * 120.42682 * 179.41167 * 19 18 17 22 22 C 1.38172 * 119.70847 * 0.02829 * 21 19 18 23 23 C 1.37957 * 119.83506 * 0.12538 * 22 21 19 24 24 C 1.37576 * 122.59037 * 342.16413 * 18 17 16 25 25 H 1.08994 * 109.47187 * 294.35360 * 1 2 3 26 26 H 1.08997 * 109.46660 * 54.35245 * 1 2 3 27 27 H 1.09001 * 109.47074 * 174.35201 * 1 2 3 28 28 H 0.96997 * 120.00301 * 1.83684 * 7 6 4 29 29 H 1.00905 * 111.00054 * 325.05374 * 12 2 1 30 30 H 1.08995 * 109.67792 * 291.06794 * 15 13 12 31 31 H 1.08994 * 109.68228 * 51.62237 * 15 13 12 32 32 H 1.08999 * 109.68093 * 170.43873 * 16 15 13 33 33 H 1.09004 * 109.68332 * 49.87926 * 16 15 13 34 34 H 1.08998 * 109.25337 * 290.84265 * 17 16 15 35 35 H 1.09003 * 109.22360 * 171.39447 * 17 16 15 36 36 H 0.96701 * 113.99922 * 90.00077 * 20 19 18 37 37 H 1.08001 * 120.14921 * 180.02562 * 21 19 18 38 38 H 1.07997 * 120.08275 * 180.15043 * 22 21 19 39 39 H 1.07996 * 119.66772 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5754 -1.6389 1.1341 6 6 1.7984 -0.1751 2.4794 7 7 1.3666 1.0619 2.5942 8 14 2.0947 -1.2067 4.0083 9 1 3.5197 -1.6215 4.0569 10 1 1.2293 -2.4127 3.9671 11 1 1.7712 -0.4057 5.2162 12 7 2.0198 -0.6925 -1.1993 13 6 2.1727 0.2429 -2.3217 14 1 1.4248 1.0311 -2.2369 15 6 3.5667 0.8649 -2.2723 16 6 3.7855 1.6650 -3.5618 17 6 3.9128 0.6811 -4.7230 18 6 2.7627 -0.2915 -4.7214 19 6 2.5143 -1.0050 -5.8930 20 8 3.2939 -0.7992 -6.9869 21 6 1.4789 -1.9221 -5.9490 22 6 0.6871 -2.1299 -4.8359 23 6 0.9315 -1.4212 -3.6778 24 6 1.9686 -0.4983 -3.6172 25 1 -0.3633 0.4237 0.9362 26 1 -0.3632 0.5989 -0.8351 27 1 -0.3633 -1.0227 -0.1011 28 1 1.1873 1.5888 1.7998 29 1 1.4124 -1.4590 -1.4477 30 1 3.6421 1.5288 -1.4112 31 1 4.3173 0.0782 -2.1967 32 1 4.6988 2.2541 -3.4779 33 1 2.9358 2.3262 -3.7323 34 1 4.8489 0.1310 -4.6270 35 1 3.9152 1.2333 -5.6628 36 1 4.0685 -1.3765 -7.0320 37 1 1.2907 -2.4728 -6.8588 38 1 -0.1207 -2.8457 -4.8721 39 1 0.3108 -1.5854 -2.8095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191283189.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:10 Heat of formation + Delta-G solvation = -52.558149 kcal Electronic energy + Delta-G solvation = -19862.092451 eV Core-core repulsion = 16960.877209 eV Total energy + Delta-G solvation = -2901.215242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49939 -39.00379 -37.27922 -36.57897 -34.57385 -31.84663 -31.28694 -29.67223 -28.17861 -26.88961 -24.34462 -23.94040 -22.95800 -21.99553 -20.50859 -19.23144 -18.64477 -17.35350 -16.93602 -16.66969 -16.20964 -15.77624 -15.47545 -15.22470 -14.93518 -14.77262 -14.26689 -13.79021 -13.66515 -13.57442 -13.33665 -13.05089 -12.96602 -12.81956 -12.54716 -12.43711 -12.19149 -11.98412 -11.91840 -11.86336 -11.58613 -11.01268 -10.77805 -10.32609 -9.78092 -9.48258 -9.02637 -8.56911 -6.25117 0.24975 0.33329 1.55252 1.62516 1.82244 2.57460 2.62016 3.20235 3.25712 3.47720 3.63298 3.70701 4.01389 4.07620 4.13083 4.24466 4.31422 4.44638 4.45364 4.47975 4.58037 4.67180 4.73997 4.87874 4.89644 4.95587 4.99493 5.04128 5.11066 5.25057 5.35966 5.37617 5.41514 5.50717 5.63528 5.87260 5.96369 6.16909 6.52068 6.69860 6.76240 6.86118 7.51519 8.79343 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030664 B = 0.005066 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.909818 B = 5525.194821 C = 5970.954491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.204 3.796 3 H -0.003 1.003 4 C -0.591 4.591 5 H 0.045 0.955 6 C -0.029 4.029 7 N -0.934 5.934 8 Si 1.113 2.887 9 H -0.275 1.275 10 H -0.271 1.271 11 H -0.286 1.286 12 N -0.675 5.675 13 C 0.127 3.873 14 H 0.030 0.970 15 C -0.101 4.101 16 C -0.112 4.112 17 C -0.068 4.068 18 C -0.107 4.107 19 C 0.101 3.899 20 O -0.500 6.500 21 C -0.148 4.148 22 C -0.102 4.102 23 C -0.144 4.144 24 C -0.071 4.071 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.049 0.951 28 H 0.255 0.745 29 H 0.334 0.666 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.408 0.592 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.632 -4.856 -18.311 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.095 3.905 3 H 0.015 0.985 4 C -0.630 4.630 5 H 0.063 0.937 6 C -0.227 4.227 7 N -0.572 5.572 8 Si 0.936 3.064 9 H -0.201 1.201 10 H -0.197 1.197 11 H -0.211 1.211 12 N -0.307 5.307 13 C 0.018 3.982 14 H 0.047 0.953 15 C -0.139 4.139 16 C -0.150 4.150 17 C -0.105 4.105 18 C -0.108 4.108 19 C 0.057 3.943 20 O -0.313 6.313 21 C -0.166 4.166 22 C -0.120 4.120 23 C -0.162 4.162 24 C -0.071 4.071 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.154 0.846 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.267 0.733 37 H 0.170 0.830 38 H 0.169 0.831 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.841 -4.365 -16.611 17.408 hybrid contribution -0.791 0.085 -1.355 1.572 sum 2.050 -4.280 -17.966 18.583 Atomic orbital electron populations 1.22355 1.00082 0.99945 0.99378 1.19123 0.89619 0.92830 0.88894 0.98510 1.22174 1.38352 1.10034 0.92432 0.93655 1.27123 0.94076 0.96980 1.04510 1.70938 1.45457 1.08198 1.32595 0.82972 0.77235 0.74111 0.72110 1.20101 1.19663 1.21139 1.60836 1.55560 1.10965 1.03314 1.20304 0.97089 0.93057 0.87759 0.95272 1.21471 0.95996 0.98884 0.97556 1.21542 1.02583 0.97538 0.93365 1.20333 0.95556 0.95370 0.99257 1.20093 0.98486 1.00095 0.92173 1.18464 0.94065 0.96033 0.85785 1.84733 1.41413 1.64425 1.40740 1.21587 0.96575 0.98615 0.99853 1.21167 0.99845 0.99239 0.91765 1.21264 0.98171 0.97622 0.99176 1.19641 0.95884 0.97342 0.94269 0.94434 0.94829 0.93185 0.93459 0.84570 0.94126 0.91802 0.89434 0.92386 0.89610 0.89222 0.73337 0.83044 0.83148 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.43 8.94 71.98 0.64 -6.79 16 2 C 0.20 10.42 1.99 44.17 0.09 10.51 16 3 H 0.00 -0.17 6.60 -2.39 -0.02 -0.18 16 4 C -0.59 -33.66 8.75 25.60 0.22 -33.44 16 5 H 0.05 2.62 7.85 -2.91 -0.02 2.60 16 6 C -0.03 -1.65 5.09 84.65 0.43 -1.21 16 7 N -0.93 -56.90 13.02 21.45 0.28 -56.62 16 8 Si 1.11 50.78 29.92 68.60 2.05 52.84 16 9 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 12 N -0.67 -29.34 6.05 -477.72 -2.89 -32.23 16 13 C 0.13 4.78 2.33 44.06 0.10 4.88 16 14 H 0.03 1.19 7.43 -2.39 -0.02 1.18 16 15 C -0.10 -3.55 5.45 30.61 0.17 -3.38 16 16 C -0.11 -2.99 5.98 30.62 0.18 -2.81 16 17 C -0.07 -1.61 5.28 29.73 0.16 -1.45 16 18 C -0.11 -2.93 5.75 -19.77 -0.11 -3.04 16 19 C 0.10 2.36 6.66 22.60 0.15 2.51 16 20 O -0.50 -9.23 12.53 -92.42 -1.16 -10.39 16 21 C -0.15 -3.15 9.98 22.30 0.22 -2.92 16 22 C -0.10 -2.35 10.04 22.19 0.22 -2.13 16 23 C -0.14 -4.19 8.80 22.38 0.20 -4.00 16 24 C -0.07 -2.25 5.55 -19.87 -0.11 -2.36 16 25 H 0.04 1.93 6.65 -2.39 -0.02 1.91 16 26 H 0.03 1.41 7.83 -2.39 -0.02 1.39 16 27 H 0.05 2.19 8.01 -2.39 -0.02 2.17 16 28 H 0.26 15.77 6.35 -92.71 -0.59 15.18 16 29 H 0.33 13.61 5.62 -89.69 -0.50 13.10 16 30 H 0.04 1.61 7.81 -2.39 -0.02 1.59 16 31 H 0.06 2.31 8.10 -2.39 -0.02 2.29 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 1.58 8.10 -2.38 -0.02 1.56 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 1.88 7.76 -2.39 -0.02 1.86 16 36 H 0.41 3.70 9.06 -74.06 -0.67 3.03 16 37 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.12 3.46 6.58 -2.91 -0.02 3.44 16 Total: -1.00 -67.50 309.59 0.91 -66.58 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.07 Total: 25.45 kcal Atomic # 6 Polarization: -48.19 SS G_CDS: 2.56 Total: -45.63 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -2.61 Total: -88.86 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -1.16 Total: -10.39 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.05 Total: 52.84 kcal Total: -67.50 0.91 -66.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191283189.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.027 kcal (2) G-P(sol) polarization free energy of solvation -67.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds