Wall clock time and date at job start Mon Mar 30 2020 06:26:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08998 * 109.47361 * 2 1
4 4 C 1.50708 * 109.46959 * 119.99921 * 2 1 3
5 5 H 1.07999 * 119.99803 * 114.31612 * 4 2 1
6 6 C 1.37875 * 119.99938 * 294.32672 * 4 2 1
7 7 N 1.31520 * 119.99875 * 347.23569 * 6 4 2
8 8 Si 1.86799 * 120.00002 * 167.23871 * 6 4 2
9 9 H 1.48497 * 109.46867 * 59.99786 * 8 6 4
10 10 H 1.48495 * 109.47208 * 299.99926 * 8 6 4
11 11 H 1.48503 * 109.47074 * 179.97438 * 8 6 4
12 12 N 1.46894 * 109.47565 * 239.99616 * 2 1 3
13 13 C 1.46906 * 110.99640 * 89.00080 * 12 2 1
14 14 H 1.08994 * 109.24713 * 328.47781 * 13 12 2
15 15 C 1.52731 * 109.24651 * 87.90443 * 13 12 2
16 16 C 1.53329 * 108.39420 * 171.34648 * 15 13 12
17 17 C 1.52735 * 108.36823 * 290.15928 * 16 15 13
18 18 C 1.50619 * 110.58184 * 51.13037 * 17 16 15
19 19 C 1.39400 * 117.75501 * 162.50016 * 18 17 16
20 20 O 1.35900 * 119.78414 * 359.43641 * 19 18 17
21 21 C 1.38431 * 120.42682 * 179.41167 * 19 18 17
22 22 C 1.38172 * 119.70847 * 0.02829 * 21 19 18
23 23 C 1.37957 * 119.83506 * 0.12538 * 22 21 19
24 24 C 1.37576 * 122.59037 * 342.16413 * 18 17 16
25 25 H 1.08994 * 109.47187 * 294.35360 * 1 2 3
26 26 H 1.08997 * 109.46660 * 54.35245 * 1 2 3
27 27 H 1.09001 * 109.47074 * 174.35201 * 1 2 3
28 28 H 0.96997 * 120.00301 * 1.83684 * 7 6 4
29 29 H 1.00905 * 111.00054 * 325.05374 * 12 2 1
30 30 H 1.08995 * 109.67792 * 291.06794 * 15 13 12
31 31 H 1.08994 * 109.68228 * 51.62237 * 15 13 12
32 32 H 1.08999 * 109.68093 * 170.43873 * 16 15 13
33 33 H 1.09004 * 109.68332 * 49.87926 * 16 15 13
34 34 H 1.08998 * 109.25337 * 290.84265 * 17 16 15
35 35 H 1.09003 * 109.22360 * 171.39447 * 17 16 15
36 36 H 0.96701 * 113.99922 * 90.00077 * 20 19 18
37 37 H 1.08001 * 120.14921 * 180.02562 * 21 19 18
38 38 H 1.07997 * 120.08275 * 180.15043 * 22 21 19
39 39 H 1.07996 * 119.66772 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.5754 -1.6389 1.1341
6 6 1.7984 -0.1751 2.4794
7 7 1.3666 1.0619 2.5942
8 14 2.0947 -1.2067 4.0083
9 1 3.5197 -1.6215 4.0569
10 1 1.2293 -2.4127 3.9671
11 1 1.7712 -0.4057 5.2162
12 7 2.0198 -0.6925 -1.1993
13 6 2.1727 0.2429 -2.3217
14 1 1.4248 1.0311 -2.2369
15 6 3.5667 0.8649 -2.2723
16 6 3.7855 1.6650 -3.5618
17 6 3.9128 0.6811 -4.7230
18 6 2.7627 -0.2915 -4.7214
19 6 2.5143 -1.0050 -5.8930
20 8 3.2939 -0.7992 -6.9869
21 6 1.4789 -1.9221 -5.9490
22 6 0.6871 -2.1299 -4.8359
23 6 0.9315 -1.4212 -3.6778
24 6 1.9686 -0.4983 -3.6172
25 1 -0.3633 0.4237 0.9362
26 1 -0.3632 0.5989 -0.8351
27 1 -0.3633 -1.0227 -0.1011
28 1 1.1873 1.5888 1.7998
29 1 1.4124 -1.4590 -1.4477
30 1 3.6421 1.5288 -1.4112
31 1 4.3173 0.0782 -2.1967
32 1 4.6988 2.2541 -3.4779
33 1 2.9358 2.3262 -3.7323
34 1 4.8489 0.1310 -4.6270
35 1 3.9152 1.2333 -5.6628
36 1 4.0685 -1.3765 -7.0320
37 1 1.2907 -2.4728 -6.8588
38 1 -0.1207 -2.8457 -4.8721
39 1 0.3108 -1.5854 -2.8095
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000191283189.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:26:10
Heat of formation + Delta-G solvation = -52.558149 kcal
Electronic energy + Delta-G solvation = -19862.092451 eV
Core-core repulsion = 16960.877209 eV
Total energy + Delta-G solvation = -2901.215242 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.49939 -39.00379 -37.27922 -36.57897 -34.57385 -31.84663 -31.28694 -29.67223
-28.17861 -26.88961 -24.34462 -23.94040 -22.95800 -21.99553 -20.50859 -19.23144
-18.64477 -17.35350 -16.93602 -16.66969 -16.20964 -15.77624 -15.47545 -15.22470
-14.93518 -14.77262 -14.26689 -13.79021 -13.66515 -13.57442 -13.33665 -13.05089
-12.96602 -12.81956 -12.54716 -12.43711 -12.19149 -11.98412 -11.91840 -11.86336
-11.58613 -11.01268 -10.77805 -10.32609 -9.78092 -9.48258 -9.02637 -8.56911
-6.25117 0.24975 0.33329 1.55252 1.62516 1.82244 2.57460 2.62016
3.20235 3.25712 3.47720 3.63298 3.70701 4.01389 4.07620 4.13083
4.24466 4.31422 4.44638 4.45364 4.47975 4.58037 4.67180 4.73997
4.87874 4.89644 4.95587 4.99493 5.04128 5.11066 5.25057 5.35966
5.37617 5.41514 5.50717 5.63528 5.87260 5.96369 6.16909 6.52068
6.69860 6.76240 6.86118 7.51519 8.79343
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.030664 B = 0.005066 C = 0.004688
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 912.909818 B = 5525.194821 C = 5970.954491
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.204 3.796
3 H -0.003 1.003
4 C -0.591 4.591
5 H 0.045 0.955
6 C -0.029 4.029
7 N -0.934 5.934
8 Si 1.113 2.887
9 H -0.275 1.275
10 H -0.271 1.271
11 H -0.286 1.286
12 N -0.675 5.675
13 C 0.127 3.873
14 H 0.030 0.970
15 C -0.101 4.101
16 C -0.112 4.112
17 C -0.068 4.068
18 C -0.107 4.107
19 C 0.101 3.899
20 O -0.500 6.500
21 C -0.148 4.148
22 C -0.102 4.102
23 C -0.144 4.144
24 C -0.071 4.071
25 H 0.037 0.963
26 H 0.033 0.967
27 H 0.049 0.951
28 H 0.255 0.745
29 H 0.334 0.666
30 H 0.040 0.960
31 H 0.063 0.937
32 H 0.087 0.913
33 H 0.057 0.943
34 H 0.086 0.914
35 H 0.089 0.911
36 H 0.408 0.592
37 H 0.152 0.848
38 H 0.151 0.849
39 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.632 -4.856 -18.311 19.126
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.095 3.905
3 H 0.015 0.985
4 C -0.630 4.630
5 H 0.063 0.937
6 C -0.227 4.227
7 N -0.572 5.572
8 Si 0.936 3.064
9 H -0.201 1.201
10 H -0.197 1.197
11 H -0.211 1.211
12 N -0.307 5.307
13 C 0.018 3.982
14 H 0.047 0.953
15 C -0.139 4.139
16 C -0.150 4.150
17 C -0.105 4.105
18 C -0.108 4.108
19 C 0.057 3.943
20 O -0.313 6.313
21 C -0.166 4.166
22 C -0.120 4.120
23 C -0.162 4.162
24 C -0.071 4.071
25 H 0.056 0.944
26 H 0.052 0.948
27 H 0.068 0.932
28 H 0.065 0.935
29 H 0.154 0.846
30 H 0.059 0.941
31 H 0.082 0.918
32 H 0.106 0.894
33 H 0.076 0.924
34 H 0.104 0.896
35 H 0.108 0.892
36 H 0.267 0.733
37 H 0.170 0.830
38 H 0.169 0.831
39 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges 2.841 -4.365 -16.611 17.408
hybrid contribution -0.791 0.085 -1.355 1.572
sum 2.050 -4.280 -17.966 18.583
Atomic orbital electron populations
1.22355 1.00082 0.99945 0.99378 1.19123 0.89619 0.92830 0.88894
0.98510 1.22174 1.38352 1.10034 0.92432 0.93655 1.27123 0.94076
0.96980 1.04510 1.70938 1.45457 1.08198 1.32595 0.82972 0.77235
0.74111 0.72110 1.20101 1.19663 1.21139 1.60836 1.55560 1.10965
1.03314 1.20304 0.97089 0.93057 0.87759 0.95272 1.21471 0.95996
0.98884 0.97556 1.21542 1.02583 0.97538 0.93365 1.20333 0.95556
0.95370 0.99257 1.20093 0.98486 1.00095 0.92173 1.18464 0.94065
0.96033 0.85785 1.84733 1.41413 1.64425 1.40740 1.21587 0.96575
0.98615 0.99853 1.21167 0.99845 0.99239 0.91765 1.21264 0.98171
0.97622 0.99176 1.19641 0.95884 0.97342 0.94269 0.94434 0.94829
0.93185 0.93459 0.84570 0.94126 0.91802 0.89434 0.92386 0.89610
0.89222 0.73337 0.83044 0.83148 0.86695
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -7.43 8.94 71.98 0.64 -6.79 16
2 C 0.20 10.42 1.99 44.17 0.09 10.51 16
3 H 0.00 -0.17 6.60 -2.39 -0.02 -0.18 16
4 C -0.59 -33.66 8.75 25.60 0.22 -33.44 16
5 H 0.05 2.62 7.85 -2.91 -0.02 2.60 16
6 C -0.03 -1.65 5.09 84.65 0.43 -1.21 16
7 N -0.93 -56.90 13.02 21.45 0.28 -56.62 16
8 Si 1.11 50.78 29.92 68.60 2.05 52.84 16
9 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16
10 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16
11 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16
12 N -0.67 -29.34 6.05 -477.72 -2.89 -32.23 16
13 C 0.13 4.78 2.33 44.06 0.10 4.88 16
14 H 0.03 1.19 7.43 -2.39 -0.02 1.18 16
15 C -0.10 -3.55 5.45 30.61 0.17 -3.38 16
16 C -0.11 -2.99 5.98 30.62 0.18 -2.81 16
17 C -0.07 -1.61 5.28 29.73 0.16 -1.45 16
18 C -0.11 -2.93 5.75 -19.77 -0.11 -3.04 16
19 C 0.10 2.36 6.66 22.60 0.15 2.51 16
20 O -0.50 -9.23 12.53 -92.42 -1.16 -10.39 16
21 C -0.15 -3.15 9.98 22.30 0.22 -2.92 16
22 C -0.10 -2.35 10.04 22.19 0.22 -2.13 16
23 C -0.14 -4.19 8.80 22.38 0.20 -4.00 16
24 C -0.07 -2.25 5.55 -19.87 -0.11 -2.36 16
25 H 0.04 1.93 6.65 -2.39 -0.02 1.91 16
26 H 0.03 1.41 7.83 -2.39 -0.02 1.39 16
27 H 0.05 2.19 8.01 -2.39 -0.02 2.17 16
28 H 0.26 15.77 6.35 -92.71 -0.59 15.18 16
29 H 0.33 13.61 5.62 -89.69 -0.50 13.10 16
30 H 0.04 1.61 7.81 -2.39 -0.02 1.59 16
31 H 0.06 2.31 8.10 -2.39 -0.02 2.29 16
32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16
33 H 0.06 1.58 8.10 -2.38 -0.02 1.56 16
34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16
35 H 0.09 1.88 7.76 -2.39 -0.02 1.86 16
36 H 0.41 3.70 9.06 -74.06 -0.67 3.03 16
37 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16
38 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16
39 H 0.12 3.46 6.58 -2.91 -0.02 3.44 16
Total: -1.00 -67.50 309.59 0.91 -66.58
By element:
Atomic # 1 Polarization: 25.38 SS G_CDS: 0.07 Total: 25.45 kcal
Atomic # 6 Polarization: -48.19 SS G_CDS: 2.56 Total: -45.63 kcal
Atomic # 7 Polarization: -86.24 SS G_CDS: -2.61 Total: -88.86 kcal
Atomic # 8 Polarization: -9.23 SS G_CDS: -1.16 Total: -10.39 kcal
Atomic # 14 Polarization: 50.78 SS G_CDS: 2.05 Total: 52.84 kcal
Total: -67.50 0.91 -66.58 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000191283189.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.027 kcal
(2) G-P(sol) polarization free energy of solvation -67.498 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.471 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.585 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.558 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds