Wall clock time and date at job start Mon Mar 30 2020 06:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47298 * 2 1 4 4 C 1.50697 * 109.47294 * 239.99417 * 2 1 3 5 5 H 1.07998 * 120.00216 * 275.36126 * 4 2 1 6 6 C 1.37882 * 119.99733 * 95.36650 * 4 2 1 7 7 N 1.31513 * 119.99779 * 185.53334 * 6 4 2 8 8 Si 1.86794 * 120.00117 * 5.53262 * 6 4 2 9 9 H 1.48509 * 109.47093 * 84.88333 * 8 6 4 10 10 H 1.48504 * 109.47077 * 204.88073 * 8 6 4 11 11 H 1.48494 * 109.47370 * 324.88394 * 8 6 4 12 12 N 1.46909 * 109.47332 * 119.99265 * 2 1 3 13 13 C 1.46891 * 111.00293 * 262.71668 * 12 2 1 14 14 H 1.09003 * 109.21631 * 323.30455 * 13 12 2 15 15 C 1.52730 * 109.25144 * 82.74502 * 13 12 2 16 16 C 1.53328 * 108.39498 * 171.39136 * 15 13 12 17 17 C 1.52735 * 108.37969 * 290.18690 * 16 15 13 18 18 C 1.50627 * 110.65055 * 50.90597 * 17 16 15 19 19 C 1.39396 * 117.76425 * 162.17193 * 18 17 16 20 20 O 1.35909 * 119.78597 * 359.88860 * 19 18 17 21 21 C 1.38433 * 120.43131 * 179.60715 * 19 18 17 22 22 C 1.38178 * 119.70330 * 0.29634 * 21 19 18 23 23 C 1.37958 * 119.83669 * 0.13460 * 22 21 19 24 24 C 1.37575 * 122.58694 * 342.57599 * 18 17 16 25 25 H 1.08998 * 109.47302 * 65.00068 * 1 2 3 26 26 H 1.08997 * 109.46914 * 184.99797 * 1 2 3 27 27 H 1.09002 * 109.47467 * 304.99566 * 1 2 3 28 28 H 0.97003 * 119.99942 * 179.97438 * 7 6 4 29 29 H 1.00894 * 110.99838 * 138.75543 * 12 2 1 30 30 H 1.08997 * 109.68380 * 291.11756 * 15 13 12 31 31 H 1.09001 * 109.67793 * 51.62941 * 15 13 12 32 32 H 1.09005 * 109.68221 * 49.90902 * 16 15 13 33 33 H 1.08996 * 109.68092 * 170.42600 * 16 15 13 34 34 H 1.08997 * 109.25533 * 171.39793 * 17 16 15 35 35 H 1.09000 * 109.25422 * 290.86569 * 17 16 15 36 36 H 0.96699 * 113.99721 * 269.72114 * 20 19 18 37 37 H 1.07994 * 120.14804 * 180.26666 * 21 19 18 38 38 H 1.07998 * 120.08128 * 180.15968 * 22 21 19 39 39 H 1.07998 * 119.66917 * 179.89576 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1299 -1.7861 -1.2308 6 6 2.3674 0.0126 -2.3555 7 7 2.7014 -0.6123 -3.4634 8 14 2.3469 1.8798 -2.3061 9 1 3.6415 2.3751 -1.7730 10 1 2.1417 2.4091 -3.6784 11 1 1.2414 2.3397 -1.4277 12 7 2.0197 -0.6924 1.1996 13 6 2.3591 0.2666 2.2593 14 1 2.7957 1.1584 1.8097 15 6 1.0889 0.6535 3.0140 16 6 1.4887 1.4788 4.2428 17 6 2.1863 0.5538 5.2381 18 6 3.2834 -0.2249 4.5606 19 6 4.2530 -0.8173 5.3681 20 8 4.1849 -0.6772 6.7182 21 6 5.2816 -1.5523 4.8040 22 6 5.3494 -1.6935 3.4312 23 6 4.3945 -1.0995 2.6321 24 6 3.3609 -0.3598 3.1937 25 1 -0.3634 0.4343 -0.9314 26 1 -0.3633 -1.0237 0.0895 27 1 -0.3634 0.5894 0.8419 28 1 2.9368 -0.1035 -4.2551 29 1 2.8079 -1.2826 0.9799 30 1 0.4439 1.2477 2.3668 31 1 0.5619 -0.2464 3.3311 32 1 2.1689 2.2764 3.9439 33 1 0.5984 1.9085 4.7019 34 1 2.6112 1.1497 6.0457 35 1 1.4582 -0.1443 5.6512 36 1 4.6593 0.0938 7.0580 37 1 6.0279 -2.0130 5.4342 38 1 6.1478 -2.2677 2.9848 39 1 4.4511 -1.2101 1.5593 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191283204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:12 Heat of formation + Delta-G solvation = -28.676822 kcal Electronic energy + Delta-G solvation = -19943.476305 eV Core-core repulsion = 17043.296635 eV Total energy + Delta-G solvation = -2900.179670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.34363 -37.74143 -35.91798 -35.03406 -32.52855 -30.83531 -30.12500 -28.48837 -27.17100 -25.08743 -23.12636 -22.63925 -21.47600 -19.72860 -19.25416 -18.11633 -17.05626 -16.08452 -15.86383 -15.23922 -14.94707 -14.44023 -14.09252 -13.86950 -13.52130 -13.38107 -12.70670 -12.56092 -12.31821 -12.27075 -11.97684 -11.62992 -11.55798 -11.14392 -10.93597 -10.87401 -10.84913 -10.69307 -10.36299 -10.32657 -9.85285 -9.74649 -8.99626 -8.61448 -8.54371 -8.39908 -7.43823 -6.16148 -4.17024 1.35860 1.45337 3.20960 3.30607 3.32383 3.72234 4.21327 4.33686 4.76029 4.80971 4.91342 5.16120 5.17845 5.22520 5.36552 5.39122 5.50201 5.64063 5.72902 5.84634 5.93091 5.98818 6.04046 6.16923 6.19908 6.32352 6.43149 6.51125 6.60042 6.64775 6.73225 6.81887 6.89379 6.92985 6.94731 7.44471 7.58713 7.64785 7.94332 8.36236 8.61981 8.92330 9.47973 10.96812 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025633 B = 0.005980 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.072550 B = 4680.839855 C = 5266.784749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.178 3.822 3 H 0.011 0.989 4 C -0.526 4.526 5 H 0.079 0.921 6 C 0.075 3.925 7 N -0.895 5.895 8 Si 0.873 3.127 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.679 5.679 13 C 0.123 3.877 14 H 0.048 0.952 15 C -0.108 4.108 16 C -0.122 4.122 17 C -0.069 4.069 18 C -0.097 4.097 19 C 0.093 3.907 20 O -0.498 6.498 21 C -0.151 4.151 22 C -0.107 4.107 23 C -0.121 4.121 24 C -0.049 4.049 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.023 0.977 28 H 0.265 0.735 29 H 0.343 0.657 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.383 0.617 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 3.827 17.308 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.070 3.930 3 H 0.028 0.972 4 C -0.564 4.564 5 H 0.097 0.903 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.700 3.300 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.314 5.314 13 C 0.013 3.987 14 H 0.066 0.934 15 C -0.146 4.146 16 C -0.160 4.160 17 C -0.106 4.106 18 C -0.098 4.098 19 C 0.049 3.951 20 O -0.307 6.307 21 C -0.170 4.170 22 C -0.125 4.125 23 C -0.139 4.139 24 C -0.050 4.050 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.165 0.835 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.238 0.762 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.117 3.202 17.296 17.717 hybrid contribution 1.249 1.687 -0.499 2.157 sum 3.366 4.889 16.797 17.815 Atomic orbital electron populations 1.21927 0.98007 1.00298 0.98165 1.19665 0.92618 0.92730 0.88010 0.97178 1.21192 1.43848 0.95787 0.95606 0.90327 1.25022 0.94350 0.98148 0.95264 1.69906 1.45942 1.35835 1.01520 0.86919 0.79028 0.86648 0.77356 1.20317 1.21336 1.18878 1.60933 1.39393 1.21339 1.09723 1.20438 0.92422 0.94128 0.91677 0.93440 1.21660 0.97288 1.00074 0.95599 1.21608 1.00071 0.97949 0.96350 1.20277 0.95615 0.97400 0.97295 1.19856 0.97472 0.99759 0.92668 1.18411 0.95004 0.99238 0.82442 1.84829 1.76981 1.50887 1.18023 1.21255 0.98578 1.01694 0.95453 1.20925 0.99022 0.99580 0.92950 1.21343 0.94285 0.97428 1.00865 1.19740 0.95712 0.96852 0.92687 0.94027 0.93186 0.95768 0.92540 0.83491 0.91270 0.90876 0.92044 0.91521 0.91407 0.90611 0.76217 0.85869 0.85668 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.29 37.15 0.35 -2.38 16 2 C 0.18 4.13 2.27 -68.86 -0.16 3.97 16 3 H 0.01 0.25 4.35 -51.93 -0.23 0.02 16 4 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 16 5 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 6 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 8 Si 0.87 21.16 27.01 -169.99 -4.59 16.57 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.26 -6.17 6.79 56.52 0.38 -5.78 16 12 N -0.68 -13.91 6.17 -102.35 -0.63 -14.54 16 13 C 0.12 2.17 2.50 -69.04 -0.17 2.00 16 14 H 0.05 0.90 7.38 -51.93 -0.38 0.51 16 15 C -0.11 -1.68 4.96 -26.70 -0.13 -1.81 16 16 C -0.12 -1.52 5.98 -26.70 -0.16 -1.68 16 17 C -0.07 -0.85 5.28 -28.05 -0.15 -1.00 16 18 C -0.10 -1.39 5.75 -104.47 -0.60 -1.99 16 19 C 0.09 1.24 6.66 -39.08 -0.26 0.98 16 20 O -0.50 -5.60 12.53 -19.45 -0.24 -5.84 16 21 C -0.15 -1.94 9.98 -39.53 -0.39 -2.33 16 22 C -0.11 -1.44 10.04 -39.71 -0.40 -1.84 16 23 C -0.12 -1.89 8.88 -39.42 -0.35 -2.24 16 24 C -0.05 -0.80 5.55 -104.63 -0.58 -1.38 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.02 0.46 5.94 -51.93 -0.31 0.15 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.34 7.15 5.52 -39.30 -0.22 6.93 16 30 H 0.07 1.11 6.26 -51.93 -0.32 0.78 16 31 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.70 7.75 -51.93 -0.40 0.30 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.38 2.48 9.06 45.56 0.41 2.89 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.13 2.15 6.49 -52.49 -0.34 1.81 16 LS Contribution 306.01 15.07 4.61 4.61 Total: -1.00 -30.43 306.01 -8.23 -38.67 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -4.74 Total: 8.83 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -3.41 Total: -22.33 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.14 Total: -40.50 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.24 Total: -5.84 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.59 Total: 16.57 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.43 -8.23 -38.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191283204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.990 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds