Wall clock time and date at job start Mon Mar 30 2020 06:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47298 * 2 1 4 4 C 1.50697 * 109.47294 * 239.99417 * 2 1 3 5 5 H 1.07998 * 120.00216 * 275.36126 * 4 2 1 6 6 C 1.37882 * 119.99733 * 95.36650 * 4 2 1 7 7 N 1.31513 * 119.99779 * 185.53334 * 6 4 2 8 8 Si 1.86794 * 120.00117 * 5.53262 * 6 4 2 9 9 H 1.48509 * 109.47093 * 84.88333 * 8 6 4 10 10 H 1.48504 * 109.47077 * 204.88073 * 8 6 4 11 11 H 1.48494 * 109.47370 * 324.88394 * 8 6 4 12 12 N 1.46909 * 109.47332 * 119.99265 * 2 1 3 13 13 C 1.46891 * 111.00293 * 262.71668 * 12 2 1 14 14 H 1.09003 * 109.21631 * 323.30455 * 13 12 2 15 15 C 1.52730 * 109.25144 * 82.74502 * 13 12 2 16 16 C 1.53328 * 108.39498 * 171.39136 * 15 13 12 17 17 C 1.52735 * 108.37969 * 290.18690 * 16 15 13 18 18 C 1.50627 * 110.65055 * 50.90597 * 17 16 15 19 19 C 1.39396 * 117.76425 * 162.17193 * 18 17 16 20 20 O 1.35909 * 119.78597 * 359.88860 * 19 18 17 21 21 C 1.38433 * 120.43131 * 179.60715 * 19 18 17 22 22 C 1.38178 * 119.70330 * 0.29634 * 21 19 18 23 23 C 1.37958 * 119.83669 * 0.13460 * 22 21 19 24 24 C 1.37575 * 122.58694 * 342.57599 * 18 17 16 25 25 H 1.08998 * 109.47302 * 65.00068 * 1 2 3 26 26 H 1.08997 * 109.46914 * 184.99797 * 1 2 3 27 27 H 1.09002 * 109.47467 * 304.99566 * 1 2 3 28 28 H 0.97003 * 119.99942 * 179.97438 * 7 6 4 29 29 H 1.00894 * 110.99838 * 138.75543 * 12 2 1 30 30 H 1.08997 * 109.68380 * 291.11756 * 15 13 12 31 31 H 1.09001 * 109.67793 * 51.62941 * 15 13 12 32 32 H 1.09005 * 109.68221 * 49.90902 * 16 15 13 33 33 H 1.08996 * 109.68092 * 170.42600 * 16 15 13 34 34 H 1.08997 * 109.25533 * 171.39793 * 17 16 15 35 35 H 1.09000 * 109.25422 * 290.86569 * 17 16 15 36 36 H 0.96699 * 113.99721 * 269.72114 * 20 19 18 37 37 H 1.07994 * 120.14804 * 180.26666 * 21 19 18 38 38 H 1.07998 * 120.08128 * 180.15968 * 22 21 19 39 39 H 1.07998 * 119.66917 * 179.89576 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1299 -1.7861 -1.2308 6 6 2.3674 0.0126 -2.3555 7 7 2.7014 -0.6123 -3.4634 8 14 2.3469 1.8798 -2.3061 9 1 3.6415 2.3751 -1.7730 10 1 2.1417 2.4091 -3.6784 11 1 1.2414 2.3397 -1.4277 12 7 2.0197 -0.6924 1.1996 13 6 2.3591 0.2666 2.2593 14 1 2.7957 1.1584 1.8097 15 6 1.0889 0.6535 3.0140 16 6 1.4887 1.4788 4.2428 17 6 2.1863 0.5538 5.2381 18 6 3.2834 -0.2249 4.5606 19 6 4.2530 -0.8173 5.3681 20 8 4.1849 -0.6772 6.7182 21 6 5.2816 -1.5523 4.8040 22 6 5.3494 -1.6935 3.4312 23 6 4.3945 -1.0995 2.6321 24 6 3.3609 -0.3598 3.1937 25 1 -0.3634 0.4343 -0.9314 26 1 -0.3633 -1.0237 0.0895 27 1 -0.3634 0.5894 0.8419 28 1 2.9368 -0.1035 -4.2551 29 1 2.8079 -1.2826 0.9799 30 1 0.4439 1.2477 2.3668 31 1 0.5619 -0.2464 3.3311 32 1 2.1689 2.2764 3.9439 33 1 0.5984 1.9085 4.7019 34 1 2.6112 1.1497 6.0457 35 1 1.4582 -0.1443 5.6512 36 1 4.6593 0.0938 7.0580 37 1 6.0279 -2.0130 5.4342 38 1 6.1478 -2.2677 2.9848 39 1 4.4511 -1.2101 1.5593 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191283204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:12 Heat of formation + Delta-G solvation = -49.672642 kcal Electronic energy + Delta-G solvation = -19944.386752 eV Core-core repulsion = 17043.296635 eV Total energy + Delta-G solvation = -2901.090117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43897 -38.92329 -37.14239 -36.37157 -34.43392 -32.39839 -31.22448 -29.76349 -28.52184 -27.11675 -24.26961 -23.74321 -22.70368 -21.49341 -20.39764 -19.44744 -18.71781 -17.34205 -17.04595 -16.68798 -16.05877 -15.88183 -15.53878 -15.21591 -15.05816 -14.55112 -14.46841 -13.86217 -13.68839 -13.49288 -13.24726 -13.08873 -12.84565 -12.70464 -12.63680 -12.44606 -12.12807 -12.04214 -11.86420 -11.74544 -11.55097 -11.02711 -10.89561 -10.70480 -9.72968 -9.44716 -9.04875 -8.34607 -6.40000 0.28947 0.37122 1.28474 1.30980 1.41563 2.28578 2.65695 2.99578 3.25726 3.55849 3.70191 3.76411 4.09742 4.12909 4.19761 4.27364 4.39827 4.50750 4.53776 4.54321 4.72425 4.87364 4.92937 4.95956 5.00105 5.05361 5.08449 5.11304 5.18613 5.29466 5.44227 5.46494 5.52476 5.58535 5.66164 5.73205 5.91585 6.02337 6.49546 6.65722 6.82007 6.89457 7.29296 8.82015 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025633 B = 0.005980 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.072550 B = 4680.839855 C = 5266.784749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.183 3.817 3 H 0.010 0.990 4 C -0.528 4.528 5 H 0.036 0.964 6 C 0.020 3.980 7 N -0.942 5.942 8 Si 0.936 3.064 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.246 1.246 12 N -0.682 5.682 13 C 0.123 3.877 14 H 0.033 0.967 15 C -0.106 4.106 16 C -0.114 4.114 17 C -0.067 4.067 18 C -0.105 4.105 19 C 0.100 3.900 20 O -0.499 6.499 21 C -0.149 4.149 22 C -0.107 4.107 23 C -0.145 4.145 24 C -0.069 4.069 25 H 0.033 0.967 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.267 0.733 29 H 0.336 0.664 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.407 0.593 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 5.559 20.343 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.074 3.926 3 H 0.027 0.973 4 C -0.566 4.566 5 H 0.054 0.946 6 C -0.179 4.179 7 N -0.582 5.582 8 Si 0.760 3.240 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.170 1.170 12 N -0.315 5.315 13 C 0.013 3.987 14 H 0.051 0.949 15 C -0.144 4.144 16 C -0.152 4.152 17 C -0.103 4.103 18 C -0.106 4.106 19 C 0.055 3.945 20 O -0.312 6.312 21 C -0.167 4.167 22 C -0.125 4.125 23 C -0.163 4.163 24 C -0.070 4.070 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.157 0.843 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.266 0.734 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.168 4.948 20.370 21.074 hybrid contribution 1.292 1.025 -1.344 2.127 sum 3.459 5.973 19.026 20.239 Atomic orbital electron populations 1.21841 0.96663 1.00402 0.99029 1.19543 0.93593 0.92123 0.87321 0.97282 1.21402 1.43538 0.94138 0.97561 0.94561 1.25845 0.94061 1.03267 0.94696 1.70048 1.47749 1.37925 1.02446 0.85898 0.79842 0.80445 0.77790 1.19509 1.20941 1.16971 1.60920 1.39427 1.21879 1.09274 1.20488 0.94112 0.92841 0.91216 0.94920 1.21628 0.95874 1.00164 0.96714 1.21580 1.01196 0.97484 0.94950 1.20330 0.94994 0.97396 0.97619 1.20091 0.98466 1.00064 0.91976 1.18458 0.94388 0.98388 0.83268 1.84775 1.77536 1.52405 1.16510 1.21558 0.98916 1.01050 0.95221 1.21136 0.98790 0.99119 0.93454 1.21310 0.95693 0.99121 1.00202 1.19656 0.95749 0.98099 0.93483 0.94762 0.93913 0.92827 0.92390 0.84278 0.91824 0.91673 0.91834 0.89063 0.88783 0.90609 0.73415 0.83275 0.83844 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 9.29 71.98 0.67 -4.53 16 2 C 0.18 8.59 2.27 44.16 0.10 8.69 16 3 H 0.01 0.45 4.35 -2.39 -0.01 0.44 16 4 C -0.53 -29.95 8.73 25.60 0.22 -29.73 16 5 H 0.04 2.31 8.06 -2.91 -0.02 2.28 16 6 C 0.02 1.14 5.47 84.66 0.46 1.61 16 7 N -0.94 -58.27 13.96 21.45 0.30 -57.97 16 8 Si 0.94 43.85 27.01 68.60 1.85 45.70 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.25 -10.73 6.79 99.48 0.68 -10.06 16 12 N -0.68 -28.59 6.17 -477.74 -2.95 -31.54 16 13 C 0.12 4.31 2.50 44.06 0.11 4.42 16 14 H 0.03 1.24 7.38 -2.39 -0.02 1.22 16 15 C -0.11 -3.12 4.96 30.61 0.15 -2.97 16 16 C -0.11 -2.51 5.98 30.62 0.18 -2.33 16 17 C -0.07 -1.42 5.28 29.74 0.16 -1.27 16 18 C -0.10 -2.80 5.75 -19.77 -0.11 -2.91 16 19 C 0.10 2.36 6.66 22.60 0.15 2.51 16 20 O -0.50 -9.22 12.53 -92.52 -1.16 -10.38 16 21 C -0.15 -3.42 9.98 22.30 0.22 -3.20 16 22 C -0.11 -2.77 10.04 22.19 0.22 -2.55 16 23 C -0.14 -4.61 8.88 22.38 0.20 -4.41 16 24 C -0.07 -2.21 5.55 -19.87 -0.11 -2.32 16 25 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 1.96 5.94 -2.39 -0.01 1.95 16 28 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.34 14.81 5.52 -89.70 -0.50 14.31 16 30 H 0.06 1.91 6.26 -2.39 -0.01 1.90 16 31 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 32 H 0.06 1.39 8.10 -2.38 -0.02 1.37 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.53 7.75 -2.39 -0.02 1.51 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.41 3.42 9.06 -74.06 -0.67 2.75 16 37 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 39 H 0.11 3.87 6.49 -2.91 -0.02 3.85 16 Total: -1.00 -67.26 306.01 0.55 -66.71 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.13 Total: 26.46 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 2.63 Total: -38.99 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -2.65 Total: -89.51 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -1.16 Total: -10.38 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.85 Total: 45.70 kcal Total: -67.26 0.55 -66.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191283204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.038 kcal (2) G-P(sol) polarization free energy of solvation -67.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds