Wall clock time and date at job start Mon Mar 30 2020 06:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46898 * 109.47231 * 2 1 4 4 C 1.46900 * 110.99779 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.46789 * 186.65180 * 4 3 2 6 6 C 1.50705 * 119.99310 * 280.05381 * 5 4 3 7 7 C 1.32640 * 120.00454 * 100.05736 * 5 4 3 8 8 C 1.47727 * 119.99654 * 1.96423 * 7 5 4 9 9 C 1.39644 * 120.07322 * 316.64884 * 8 7 5 10 10 C 1.37776 * 119.92169 * 179.74156 * 9 8 7 11 11 C 1.39028 * 120.07724 * 0.53712 * 10 9 8 12 12 O 1.35683 * 119.92914 * 179.70094 * 11 10 9 13 13 C 1.34811 * 117.00082 * 185.76818 * 12 11 10 14 14 H 1.08001 * 120.00170 * 5.29645 * 13 12 11 15 15 C 1.38647 * 120.00088 * 185.28923 * 13 12 11 16 16 N 1.31554 * 119.99930 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99893 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47460 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47103 * 120.00406 * 17 15 13 20 20 H 1.48506 * 109.47094 * 240.00233 * 17 15 13 21 21 C 1.39030 * 120.14734 * 359.71593 * 11 10 9 22 22 C 1.37783 * 120.07197 * 0.02562 * 21 11 10 23 23 H 1.08995 * 109.47159 * 300.00076 * 1 2 3 24 24 H 1.09003 * 109.46744 * 60.00154 * 1 2 3 25 25 H 1.09002 * 109.47228 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46995 * 240.00069 * 2 1 3 27 27 H 1.08995 * 109.46984 * 120.00440 * 2 1 3 28 28 H 1.00905 * 110.99490 * 56.04683 * 3 2 1 29 29 H 1.08993 * 109.47146 * 66.64729 * 4 3 2 30 30 H 1.09001 * 109.47212 * 306.64332 * 4 3 2 31 31 H 1.09004 * 109.47041 * 90.00941 * 6 5 4 32 32 H 1.09005 * 109.46516 * 209.99893 * 6 5 4 33 33 H 1.08995 * 109.47379 * 329.99688 * 6 5 4 34 34 H 1.07999 * 120.00357 * 181.96238 * 7 5 4 35 35 H 1.07998 * 120.03645 * 0.02562 * 9 8 7 36 36 H 1.08007 * 119.96076 * 180.27620 * 10 9 8 37 37 H 0.97009 * 120.00120 * 179.97438 * 16 15 13 38 38 H 1.08003 * 119.97055 * 180.02562 * 21 11 10 39 39 H 1.07993 * 120.04013 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 0.0006 5 6 3.9527 2.8483 0.1652 6 6 3.9646 3.7786 -1.0204 7 6 4.3509 3.2830 1.3534 8 6 4.3804 2.3593 2.5059 9 6 3.3184 1.4794 2.7247 10 6 3.3516 0.6155 3.7976 11 6 4.4355 0.6270 4.6681 12 8 4.4622 -0.2208 5.7271 13 6 5.4805 -0.0789 6.5992 14 1 6.1791 0.7369 6.4856 15 6 5.6308 -0.9801 7.6420 16 7 4.7801 -1.9740 7.7802 17 14 7.0413 -0.7830 8.8507 18 1 7.8498 0.4056 8.4786 19 1 6.4976 -0.6021 10.2207 20 1 7.8976 -1.9958 8.8142 21 6 5.4920 1.5055 4.4561 22 6 5.4677 2.3683 3.3822 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.6442 1.9012 0.7814 29 1 3.8626 1.0264 -0.9426 30 1 3.8674 0.8207 0.8254 31 1 3.0054 4.2917 -1.0893 32 1 4.7613 4.5125 -0.8982 33 1 4.1360 3.2045 -1.9310 34 1 4.6537 4.3121 1.4783 35 1 2.4742 1.4728 2.0512 36 1 2.5326 -0.0684 3.9649 37 1 4.8855 -2.6048 8.5096 38 1 6.3329 1.5117 5.1339 39 1 6.2888 3.0502 3.2177 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212231917.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:04 Heat of formation + Delta-G solvation = 11.712695 kcal Electronic energy + Delta-G solvation = -19074.053489 eV Core-core repulsion = 16175.625240 eV Total energy + Delta-G solvation = -2898.428249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.35071 -37.90333 -36.03270 -34.35787 -32.34822 -30.53725 -29.84947 -29.59460 -26.13912 -25.31910 -24.56301 -22.08401 -21.89885 -21.07386 -18.34510 -17.96457 -16.89828 -15.95007 -15.16414 -15.04643 -14.73753 -14.51553 -14.02615 -13.85581 -13.62774 -13.30421 -13.01645 -12.77132 -12.73014 -12.20903 -12.13051 -12.06003 -11.72405 -11.49446 -11.41532 -11.11381 -11.04005 -10.87274 -10.64071 -10.47308 -10.36693 -9.47174 -9.09289 -8.68162 -8.43698 -8.11586 -7.04129 -6.52593 -4.10085 1.75989 2.16019 2.76378 3.09552 3.09789 3.15474 3.90953 4.35673 4.52927 4.96552 5.03724 5.11296 5.15374 5.19770 5.26856 5.46405 5.53158 5.61655 5.62481 5.74401 5.80457 5.85937 5.94873 5.95463 6.01153 6.05250 6.12984 6.15461 6.33273 6.58196 6.68564 6.80445 6.97345 7.02374 7.09351 7.22001 7.33139 7.36379 7.45897 7.74890 7.92529 8.93031 9.62293 10.65151 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.004498 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.904971 B = 6222.953473 C = 7148.165444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 N -0.684 5.684 4 C 0.085 3.915 5 C -0.147 4.147 6 C -0.101 4.101 7 C -0.083 4.083 8 C -0.165 4.165 9 C -0.070 4.070 10 C -0.197 4.197 11 C 0.157 3.843 12 O -0.174 6.174 13 C -0.392 4.392 14 H 0.094 0.906 15 C 0.040 3.960 16 N -0.860 5.860 17 Si 0.942 3.058 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.234 4.234 22 C -0.055 4.055 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.340 0.660 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.271 0.729 38 H 0.128 0.872 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 7.029 -12.747 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 N -0.319 5.319 4 C -0.043 4.043 5 C -0.148 4.148 6 C -0.158 4.158 7 C -0.103 4.103 8 C -0.166 4.166 9 C -0.088 4.088 10 C -0.216 4.216 11 C 0.103 3.897 12 O -0.076 6.076 13 C -0.468 4.468 14 H 0.111 0.889 15 C -0.165 4.165 16 N -0.494 5.494 17 Si 0.766 3.234 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.201 1.201 21 C -0.254 4.254 22 C -0.073 4.073 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.161 0.839 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.081 0.919 38 H 0.146 0.854 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.748 6.687 -13.188 15.040 hybrid contribution 0.985 -0.171 1.564 1.856 sum -1.763 6.517 -11.624 13.442 Atomic orbital electron populations 1.21762 0.95092 1.01656 1.02212 1.21964 0.95543 0.89802 1.00889 1.60807 1.07846 1.13465 1.49778 1.21115 0.87477 0.94180 1.01538 1.21767 1.02617 0.95587 0.94792 1.20624 1.01320 0.97810 0.96010 1.21468 0.99501 0.97565 0.91716 1.18481 0.97390 1.01984 0.98766 1.21040 0.97302 0.94547 0.95950 1.20113 0.99138 1.04627 0.97745 1.19482 0.92932 0.89617 0.87705 1.83966 1.45954 1.48676 1.29053 1.21407 1.06679 1.13305 1.05421 0.88905 1.25318 0.98589 0.94788 0.97806 1.70048 1.34851 1.13677 1.30816 0.85632 0.79561 0.78698 0.79470 1.19029 1.20049 1.20061 1.21116 1.01096 1.01635 1.01528 1.20812 0.96470 0.97048 0.93021 0.92764 0.92092 0.92246 0.91212 0.94654 0.83853 0.91383 0.92360 0.91839 0.92652 0.92302 0.87241 0.86929 0.86631 0.91947 0.85397 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.17 37.16 0.38 -1.13 16 2 C 0.05 0.55 6.16 -3.82 -0.02 0.53 16 3 N -0.68 -8.58 6.15 -115.05 -0.71 -9.29 16 4 C 0.08 1.14 4.87 -4.97 -0.02 1.12 16 5 C -0.15 -1.93 5.51 -101.24 -0.56 -2.49 16 6 C -0.10 -1.08 10.04 36.01 0.36 -0.72 16 7 C -0.08 -1.20 9.36 -37.60 -0.35 -1.55 16 8 C -0.17 -2.88 5.14 -104.97 -0.54 -3.42 16 9 C -0.07 -1.25 7.34 -39.23 -0.29 -1.54 16 10 C -0.20 -4.15 9.97 -39.46 -0.39 -4.54 16 11 C 0.16 3.78 6.65 -39.00 -0.26 3.52 16 12 O -0.17 -4.92 9.75 0.31 0.00 -4.92 16 13 C -0.39 -10.85 9.44 30.88 0.29 -10.56 16 14 H 0.09 2.38 5.28 -52.49 -0.28 2.10 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -24.93 13.67 55.48 0.76 -24.17 16 17 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 21 C -0.23 -5.08 9.12 -39.45 -0.36 -5.44 16 22 C -0.06 -1.02 9.78 -39.22 -0.38 -1.40 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.04 0.46 8.10 -51.93 -0.42 0.04 16 28 H 0.34 4.36 6.49 -39.29 -0.26 4.10 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.92 5.10 -51.93 -0.27 0.66 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 34 H 0.11 1.41 8.05 -52.49 -0.42 0.99 16 35 H 0.11 1.75 3.68 -52.49 -0.19 1.56 16 36 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 37 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 38 H 0.13 2.77 5.69 -52.48 -0.30 2.47 16 39 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 321.35 15.07 4.84 4.84 Total: -1.00 -29.21 321.35 -7.86 -37.07 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.49 Total: 7.87 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -2.25 Total: -26.64 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.05 Total: -33.46 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: 0.00 Total: -4.92 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.21 -7.86 -37.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212231917.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.783 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds