Wall clock time and date at job start Mon Mar 30 2020 06:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46898 * 109.47231 * 2 1 4 4 C 1.46900 * 110.99779 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.46789 * 186.65180 * 4 3 2 6 6 C 1.50705 * 119.99310 * 280.05381 * 5 4 3 7 7 C 1.32640 * 120.00454 * 100.05736 * 5 4 3 8 8 C 1.47727 * 119.99654 * 1.96423 * 7 5 4 9 9 C 1.39644 * 120.07322 * 316.64884 * 8 7 5 10 10 C 1.37776 * 119.92169 * 179.74156 * 9 8 7 11 11 C 1.39028 * 120.07724 * 0.53712 * 10 9 8 12 12 O 1.35683 * 119.92914 * 179.70094 * 11 10 9 13 13 C 1.34811 * 117.00082 * 185.76818 * 12 11 10 14 14 H 1.08001 * 120.00170 * 5.29645 * 13 12 11 15 15 C 1.38647 * 120.00088 * 185.28923 * 13 12 11 16 16 N 1.31554 * 119.99930 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99893 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47460 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47103 * 120.00406 * 17 15 13 20 20 H 1.48506 * 109.47094 * 240.00233 * 17 15 13 21 21 C 1.39030 * 120.14734 * 359.71593 * 11 10 9 22 22 C 1.37783 * 120.07197 * 0.02562 * 21 11 10 23 23 H 1.08995 * 109.47159 * 300.00076 * 1 2 3 24 24 H 1.09003 * 109.46744 * 60.00154 * 1 2 3 25 25 H 1.09002 * 109.47228 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46995 * 240.00069 * 2 1 3 27 27 H 1.08995 * 109.46984 * 120.00440 * 2 1 3 28 28 H 1.00905 * 110.99490 * 56.04683 * 3 2 1 29 29 H 1.08993 * 109.47146 * 66.64729 * 4 3 2 30 30 H 1.09001 * 109.47212 * 306.64332 * 4 3 2 31 31 H 1.09004 * 109.47041 * 90.00941 * 6 5 4 32 32 H 1.09005 * 109.46516 * 209.99893 * 6 5 4 33 33 H 1.08995 * 109.47379 * 329.99688 * 6 5 4 34 34 H 1.07999 * 120.00357 * 181.96238 * 7 5 4 35 35 H 1.07998 * 120.03645 * 0.02562 * 9 8 7 36 36 H 1.08007 * 119.96076 * 180.27620 * 10 9 8 37 37 H 0.97009 * 120.00120 * 179.97438 * 16 15 13 38 38 H 1.08003 * 119.97055 * 180.02562 * 21 11 10 39 39 H 1.07993 * 120.04013 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 0.0006 5 6 3.9527 2.8483 0.1652 6 6 3.9646 3.7786 -1.0204 7 6 4.3509 3.2830 1.3534 8 6 4.3804 2.3593 2.5059 9 6 3.3184 1.4794 2.7247 10 6 3.3516 0.6155 3.7976 11 6 4.4355 0.6270 4.6681 12 8 4.4622 -0.2208 5.7271 13 6 5.4805 -0.0789 6.5992 14 1 6.1791 0.7369 6.4856 15 6 5.6308 -0.9801 7.6420 16 7 4.7801 -1.9740 7.7802 17 14 7.0413 -0.7830 8.8507 18 1 7.8498 0.4056 8.4786 19 1 6.4976 -0.6021 10.2207 20 1 7.8976 -1.9958 8.8142 21 6 5.4920 1.5055 4.4561 22 6 5.4677 2.3683 3.3822 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.6442 1.9012 0.7814 29 1 3.8626 1.0264 -0.9426 30 1 3.8674 0.8207 0.8254 31 1 3.0054 4.2917 -1.0893 32 1 4.7613 4.5125 -0.8982 33 1 4.1360 3.2045 -1.9310 34 1 4.6537 4.3121 1.4783 35 1 2.4742 1.4728 2.0512 36 1 2.5326 -0.0684 3.9649 37 1 4.8855 -2.6048 8.5096 38 1 6.3329 1.5117 5.1339 39 1 6.2888 3.0502 3.2177 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212231917.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:04 Heat of formation + Delta-G solvation = -5.831708 kcal Electronic energy + Delta-G solvation = -19074.814271 eV Core-core repulsion = 16175.625240 eV Total energy + Delta-G solvation = -2899.189031 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.97299 -39.37932 -37.45889 -35.50193 -34.28853 -32.02235 -31.20316 -30.76289 -27.74696 -26.78280 -25.77751 -23.61900 -22.97239 -22.63978 -20.06322 -19.38650 -18.58049 -17.21651 -16.56917 -16.36985 -16.17257 -16.08090 -15.58699 -15.24118 -15.11228 -14.60774 -14.30236 -14.19518 -13.92159 -13.63616 -13.49262 -13.15305 -13.05048 -12.90859 -12.58845 -12.45557 -12.30493 -12.15260 -12.09416 -12.00124 -11.61453 -11.28108 -10.87356 -10.10581 -9.90475 -9.34470 -8.65774 -8.50940 -6.18324 0.32862 0.52946 1.33916 1.36153 1.49885 1.52403 2.15261 2.79722 3.12823 3.31896 3.46269 3.86867 3.99284 4.05132 4.09182 4.24740 4.27386 4.41111 4.47727 4.60348 4.66333 4.75599 4.84000 4.87369 4.96537 4.99332 5.04621 5.09840 5.11544 5.16042 5.26206 5.30788 5.43063 5.62577 5.64922 5.75188 5.96128 5.98227 6.03205 6.14319 6.37941 6.93720 7.73174 8.72353 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.004498 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.904971 B = 6222.953473 C = 7148.165444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.045 3.955 3 N -0.677 5.677 4 C 0.080 3.920 5 C -0.121 4.121 6 C -0.100 4.100 7 C -0.107 4.107 8 C -0.138 4.138 9 C -0.064 4.064 10 C -0.206 4.206 11 C 0.116 3.884 12 O -0.229 6.229 13 C -0.415 4.415 14 H 0.102 0.898 15 C -0.022 4.022 16 N -0.919 5.919 17 Si 1.020 2.980 18 H -0.251 1.251 19 H -0.268 1.268 20 H -0.268 1.268 21 C -0.241 4.241 22 C -0.058 4.058 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.017 0.983 28 H 0.338 0.662 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.273 0.727 38 H 0.122 0.878 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 9.554 -15.284 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 N -0.311 5.311 4 C -0.048 4.048 5 C -0.121 4.121 6 C -0.157 4.157 7 C -0.126 4.126 8 C -0.139 4.139 9 C -0.083 4.083 10 C -0.226 4.226 11 C 0.065 3.935 12 O -0.135 6.135 13 C -0.491 4.491 14 H 0.120 0.880 15 C -0.219 4.219 16 N -0.557 5.557 17 Si 0.839 3.161 18 H -0.174 1.174 19 H -0.193 1.193 20 H -0.193 1.193 21 C -0.260 4.260 22 C -0.075 4.075 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.035 0.965 28 H 0.160 0.840 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.128 0.872 37 H 0.083 0.917 38 H 0.140 0.860 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.156 9.256 -15.782 18.423 hybrid contribution 0.664 -0.784 1.903 2.163 sum -1.492 8.472 -13.879 16.329 Atomic orbital electron populations 1.21733 0.93670 1.02429 1.02446 1.22027 0.96753 0.89183 1.00396 1.60845 1.07031 1.13878 1.49379 1.21165 0.88133 0.94379 1.01137 1.22063 0.99227 0.95406 0.95423 1.20687 1.02533 0.97664 0.94813 1.21498 1.02226 0.98206 0.90691 1.18958 0.95770 1.00573 0.98597 1.21329 0.98400 0.93605 0.94926 1.20315 0.98460 1.05403 0.98388 1.19992 0.94862 0.90489 0.88111 1.83929 1.47331 1.51219 1.31062 1.21878 1.06942 1.14067 1.06189 0.88026 1.26608 1.01534 0.94157 0.99624 1.70189 1.37692 1.15416 1.32401 0.84518 0.75820 0.79270 0.76529 1.17402 1.19261 1.19283 1.21223 1.00294 1.01877 1.02622 1.21185 0.97826 0.96639 0.91892 0.93001 0.91312 0.91313 0.90470 0.96466 0.84030 0.90289 0.94937 0.90792 0.91003 0.91442 0.84648 0.84463 0.87174 0.91747 0.86035 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 10.17 71.98 0.73 -1.92 16 2 C 0.05 0.99 6.16 86.31 0.53 1.52 16 3 N -0.68 -15.21 6.15 -517.92 -3.18 -18.40 16 4 C 0.08 1.94 4.87 85.56 0.42 2.35 16 5 C -0.12 -2.68 5.51 -17.61 -0.10 -2.77 16 6 C -0.10 -1.65 10.04 71.24 0.72 -0.94 16 7 C -0.11 -2.65 9.36 23.62 0.22 -2.43 16 8 C -0.14 -4.50 5.14 -20.09 -0.10 -4.61 16 9 C -0.06 -2.25 7.34 22.50 0.17 -2.09 16 10 C -0.21 -9.02 9.97 22.35 0.22 -8.80 16 11 C 0.12 5.88 6.65 22.65 0.15 6.03 16 12 O -0.23 -13.92 9.75 -21.81 -0.21 -14.13 16 13 C -0.41 -24.25 9.44 67.92 0.64 -23.61 16 14 H 0.10 5.46 5.28 -2.91 -0.02 5.44 16 15 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 16 N -0.92 -56.45 13.67 21.61 0.30 -56.15 16 17 Si 1.02 42.74 29.55 68.60 2.03 44.76 16 18 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 19 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 21 C -0.24 -10.63 9.12 22.35 0.20 -10.43 16 22 C -0.06 -2.03 9.78 22.50 0.22 -1.81 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.02 0.44 8.10 -2.39 -0.02 0.42 16 28 H 0.34 7.77 6.49 -89.69 -0.58 7.19 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.03 0.97 5.10 -2.39 -0.01 0.96 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.01 8.07 -2.38 -0.02 0.99 16 33 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 34 H 0.14 2.78 8.05 -2.91 -0.02 2.75 16 35 H 0.14 4.07 3.68 -2.91 -0.01 4.06 16 36 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 37 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 38 H 0.12 5.42 5.69 -2.91 -0.02 5.40 16 39 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -67.89 321.35 3.88 -64.02 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 0.47 Total: 30.15 kcal Atomic # 6 Polarization: -54.74 SS G_CDS: 4.49 Total: -50.25 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -2.89 Total: -74.55 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.21 Total: -14.13 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -67.89 3.88 -64.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212231917.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.183 kcal (2) G-P(sol) polarization free energy of solvation -67.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds