Wall clock time and date at job start Mon Mar 30 2020 06:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99847 * 2 1 4 4 H 1.08994 * 109.47002 * 67.40600 * 3 2 1 5 5 C 1.50696 * 109.47199 * 307.40071 * 3 2 1 6 6 H 1.07996 * 120.00006 * 304.08899 * 5 3 2 7 7 C 1.37876 * 119.99934 * 124.09345 * 5 3 2 8 8 N 1.31519 * 120.00018 * 187.63725 * 7 5 3 9 9 Si 1.86806 * 119.99964 * 7.63457 * 7 5 3 10 10 H 1.48497 * 109.47052 * 269.67956 * 9 7 5 11 11 H 1.48501 * 109.46734 * 29.68571 * 9 7 5 12 12 H 1.48503 * 109.46687 * 149.68344 * 9 7 5 13 13 C 1.50701 * 109.46874 * 187.39892 * 3 2 1 14 14 C 1.38239 * 119.99712 * 45.49119 * 13 3 2 15 15 C 1.38240 * 119.99275 * 179.76381 * 14 13 3 16 16 C 1.38228 * 120.00567 * 0.50507 * 15 14 13 17 17 C 1.38239 * 119.99834 * 359.74763 * 16 15 14 18 18 C 1.38236 * 120.00055 * 359.97438 * 17 16 15 19 19 C 1.46898 * 111.00152 * 123.95698 * 2 1 3 20 20 H 1.09008 * 110.43389 * 184.41117 * 19 2 1 21 21 C 1.54812 * 110.48879 * 61.72574 * 19 2 1 22 22 C 1.54997 * 102.08966 * 220.44363 * 21 19 2 23 23 O 1.44373 * 103.49103 * 37.02021 * 22 21 19 24 24 C 1.43740 * 106.97930 * 319.93831 * 23 22 21 25 25 H 1.08994 * 109.47235 * 66.45752 * 1 2 3 26 26 H 1.09002 * 109.46953 * 186.46355 * 1 2 3 27 27 H 1.09007 * 109.46506 * 306.45270 * 1 2 3 28 28 H 0.96998 * 119.99568 * 179.97438 * 8 7 5 29 29 H 1.07995 * 120.00619 * 359.97438 * 14 13 3 30 30 H 1.08005 * 119.99699 * 180.22601 * 15 14 13 31 31 H 1.08004 * 120.00608 * 179.72427 * 16 15 14 32 32 H 1.07998 * 120.00195 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.00064 * 179.97438 * 18 17 16 34 34 H 1.09002 * 110.90396 * 338.63549 * 21 19 2 35 35 H 1.09000 * 110.91187 * 102.24333 * 21 19 2 36 36 H 1.08999 * 110.61346 * 278.52020 * 22 21 19 37 37 H 1.09002 * 110.61712 * 155.52224 * 22 21 19 38 38 H 1.08998 * 109.88221 * 267.09296 * 24 23 22 39 39 H 1.09007 * 110.00562 * 146.00743 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.7570 1.8521 0.9487 5 6 1.3698 2.1497 -1.1287 6 1 1.4439 1.7846 -2.1424 7 6 0.7029 3.3277 -0.8671 8 7 0.0299 3.9288 -1.8240 9 14 0.7551 4.0701 0.8463 10 1 -0.3806 3.5469 1.6472 11 1 2.0351 3.7052 1.5049 12 1 0.6524 5.5483 0.7485 13 6 3.4909 1.3355 -0.1830 14 6 4.0495 0.5202 -1.1496 15 6 5.4209 0.4909 -1.3206 16 6 6.2344 1.2689 -0.5183 17 6 5.6761 2.0802 0.4518 18 6 4.3043 2.1138 0.6191 19 6 1.9955 -0.7660 1.1375 20 1 3.0827 -0.6954 1.1733 21 6 1.5484 -2.2455 1.0479 22 6 1.2121 -2.5730 2.5251 23 8 0.6201 -1.3506 3.0147 24 6 1.3787 -0.2642 2.4575 25 1 -0.3633 0.4105 -0.9421 26 1 -0.3633 -1.0212 0.1157 27 1 -0.3632 0.6107 0.8267 28 1 -0.4396 4.7574 -1.6398 29 1 3.4143 -0.0912 -1.7733 30 1 5.8572 -0.1432 -2.0783 31 1 7.3062 1.2426 -0.6489 32 1 6.3116 2.6877 1.0791 33 1 3.8681 2.7474 1.3773 34 1 0.6659 -2.3475 0.4163 35 1 2.3601 -2.8759 0.6848 36 1 2.1188 -2.8101 3.0816 37 1 0.4987 -3.3951 2.5832 38 1 2.1693 0.0285 3.1483 39 1 0.7245 0.5854 2.2615 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226508845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:41 Heat of formation + Delta-G solvation = -4.648580 kcal Electronic energy + Delta-G solvation = -20579.809602 eV Core-core repulsion = 17680.671875 eV Total energy + Delta-G solvation = -2899.137727 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.75826 -38.43017 -35.98256 -32.80185 -31.33471 -30.28626 -30.17982 -28.32013 -26.85741 -24.99901 -22.81468 -22.09393 -21.81520 -20.42456 -18.89631 -17.24928 -16.33282 -16.17046 -15.84480 -14.92288 -14.89099 -14.63353 -14.27716 -13.70713 -13.45993 -12.96372 -12.79069 -12.69829 -12.18621 -12.03363 -11.71817 -11.61252 -11.40549 -11.21070 -11.11916 -10.97021 -10.69560 -10.47748 -10.17781 -9.95141 -9.93245 -9.58570 -9.41296 -8.72783 -8.25186 -7.87090 -7.37421 -6.25893 -4.23799 2.06461 2.11678 3.14887 3.22094 3.25490 4.13978 4.24294 4.44748 4.71905 4.95329 5.14536 5.20290 5.31176 5.46841 5.48427 5.49959 5.56574 5.68706 5.82374 5.89990 5.94749 5.99268 6.11846 6.20841 6.22382 6.30153 6.38358 6.40395 6.62143 6.72946 6.78010 7.00801 7.05783 7.11866 7.19920 7.31769 7.46747 7.72819 7.95567 8.00852 8.46620 8.85764 9.36215 10.85953 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013165 B = 0.010964 C = 0.007427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.305259 B = 2553.143737 C = 3769.239299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.519 5.519 3 C 0.210 3.790 4 H 0.018 0.982 5 C -0.493 4.493 6 H 0.084 0.916 7 C 0.079 3.921 8 N -0.883 5.883 9 Si 0.862 3.138 10 H -0.275 1.275 11 H -0.261 1.261 12 H -0.284 1.284 13 C -0.031 4.031 14 C -0.094 4.094 15 C -0.129 4.129 16 C -0.148 4.148 17 C -0.125 4.125 18 C -0.137 4.137 19 C 0.049 3.951 20 H 0.090 0.910 21 C -0.148 4.148 22 C 0.044 3.956 23 O -0.380 6.380 24 C 0.011 3.989 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.016 0.984 28 H 0.267 0.733 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.305 -9.107 6.162 12.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.243 5.243 3 C 0.104 3.896 4 H 0.036 0.964 5 C -0.531 4.531 6 H 0.102 0.898 7 C -0.125 4.125 8 N -0.520 5.520 9 Si 0.690 3.310 10 H -0.201 1.201 11 H -0.186 1.186 12 H -0.210 1.210 13 C -0.032 4.032 14 C -0.113 4.113 15 C -0.147 4.147 16 C -0.166 4.166 17 C -0.144 4.144 18 C -0.155 4.155 19 C -0.061 4.061 20 H 0.108 0.892 21 C -0.186 4.186 22 C -0.033 4.033 23 O -0.299 6.299 24 C -0.067 4.067 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.144 -9.129 5.802 12.440 hybrid contribution 0.004 1.147 1.489 1.880 sum 6.148 -7.983 7.291 12.437 Atomic orbital electron populations 1.22182 0.87544 0.98994 1.02142 1.62485 1.07986 1.15971 1.37835 1.18827 0.87881 0.85938 0.96951 0.96437 1.20721 1.32680 1.05593 0.94152 0.89794 1.25036 0.94138 0.96784 0.96558 1.69882 1.30984 1.18340 1.32765 0.87102 0.79151 0.79143 0.85649 1.20083 1.18613 1.21012 1.20325 0.96496 0.93082 0.93261 1.20981 0.93787 0.98763 0.97728 1.21081 0.94244 0.99916 0.99478 1.20872 0.98759 0.99166 0.97814 1.20928 0.94883 0.99630 0.98909 1.21088 0.93392 1.00509 1.00553 1.23145 1.00070 0.93619 0.89284 0.89230 1.23243 1.02712 0.95980 0.96681 1.23543 0.97839 0.88333 0.93549 1.88825 1.54842 1.14830 1.71360 1.23972 0.95877 0.91225 0.95631 0.89674 0.93200 0.96564 0.92299 0.85709 0.87196 0.87417 0.87328 0.87128 0.89458 0.90410 0.92723 0.89424 0.93087 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 8.27 60.07 0.50 1.27 16 2 N -0.52 -10.24 4.10 -227.86 -0.93 -11.17 16 3 C 0.21 4.65 1.42 -70.02 -0.10 4.55 16 4 H 0.02 0.41 3.37 -51.93 -0.18 0.24 16 5 C -0.49 -12.92 7.31 -34.44 -0.25 -13.17 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 7 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 8 N -0.88 -25.59 13.96 55.43 0.77 -24.82 16 9 Si 0.86 20.56 27.06 -169.99 -4.60 15.96 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.26 -5.90 5.43 56.52 0.31 -5.60 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C -0.03 -0.63 3.55 -104.62 -0.37 -1.00 16 14 C -0.09 -1.81 9.08 -39.58 -0.36 -2.17 16 15 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 16 C -0.15 -2.36 10.05 -39.58 -0.40 -2.76 16 17 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 18 C -0.14 -2.67 9.67 -39.58 -0.38 -3.06 16 19 C 0.05 0.83 2.92 -66.18 -0.19 0.64 16 20 H 0.09 1.54 6.90 -51.92 -0.36 1.18 16 21 C -0.15 -2.07 6.57 -24.72 -0.16 -2.24 16 22 C 0.04 0.58 7.72 38.21 0.29 0.88 16 23 O -0.38 -6.42 11.52 -35.23 -0.41 -6.82 16 24 C 0.01 0.20 6.32 37.73 0.24 0.44 16 25 H 0.08 1.87 7.17 -51.93 -0.37 1.50 16 26 H 0.05 0.86 5.85 -51.93 -0.30 0.56 16 27 H 0.02 0.33 6.42 -51.92 -0.33 0.00 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 29 H 0.12 2.43 7.89 -52.49 -0.41 2.01 16 30 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.11 2.17 6.76 -52.49 -0.35 1.82 16 34 H 0.09 1.26 5.93 -51.93 -0.31 0.96 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.67 5.27 -51.93 -0.27 1.40 16 LS Contribution 303.38 15.07 4.57 4.57 Total: -1.00 -28.24 303.38 -8.18 -36.42 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.51 Total: 5.49 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -2.08 Total: -19.63 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.16 Total: -35.99 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.41 Total: -6.82 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.60 Total: 15.96 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.24 -8.18 -36.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226508845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.774 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds