Wall clock time and date at job start Mon Mar 30 2020 06:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99967 * 2 1 4 4 N 1.46901 * 109.46988 * 95.00312 * 3 2 1 5 5 C 1.46899 * 110.99668 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47254 * 179.97438 * 5 4 3 7 7 C 1.50696 * 119.99575 * 179.97438 * 2 1 3 8 8 O 1.42891 * 109.47630 * 359.97438 * 7 2 1 9 9 C 1.35675 * 117.00274 * 179.97438 * 8 7 2 10 10 C 1.39309 * 119.81792 * 359.72912 * 9 8 7 11 11 C 1.36442 * 120.18591 * 179.76216 * 10 9 8 12 12 C 1.40829 * 119.80887 * 0.50266 * 11 10 9 13 13 C 1.41215 * 120.18027 * 179.72335 * 12 11 10 14 14 H 1.07996 * 120.00243 * 204.57503 * 13 12 11 15 15 C 1.39894 * 119.99995 * 24.56612 * 13 12 11 16 16 N 1.30892 * 119.99319 * 17.93023 * 15 13 12 17 17 Si 1.86793 * 120.00405 * 197.92293 * 15 13 12 18 18 H 1.48507 * 109.47077 * 60.00475 * 17 15 13 19 19 H 1.48499 * 109.47223 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47405 * 300.00438 * 17 15 13 21 21 C 1.40832 * 119.64320 * 359.74800 * 12 11 10 22 22 C 1.36434 * 119.81204 * 359.97438 * 21 12 11 23 23 H 1.07999 * 119.99978 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.00415 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46785 * 215.00348 * 3 2 1 26 26 H 1.08997 * 109.47312 * 334.99803 * 3 2 1 27 27 H 1.00894 * 111.00387 * 56.04406 * 4 3 2 28 28 H 1.08998 * 109.47524 * 299.99712 * 5 4 3 29 29 H 1.08997 * 109.47319 * 59.99980 * 5 4 3 30 30 H 1.08997 * 109.46939 * 59.99790 * 6 5 4 31 31 H 1.09000 * 109.47638 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.46656 * 300.00287 * 6 5 4 33 33 H 1.09000 * 109.47473 * 239.99492 * 7 2 1 34 34 H 1.09006 * 109.47041 * 120.00311 * 7 2 1 35 35 H 1.08003 * 119.90634 * 0.02562 * 10 9 8 36 36 H 1.07997 * 120.09277 * 180.25590 * 11 10 9 37 37 H 0.97004 * 119.99134 * 180.02562 * 16 15 13 38 38 H 1.08008 * 120.09588 * 179.97438 * 21 12 11 39 39 H 1.08006 * 119.90602 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.4129 1.6688 1.3797 5 6 3.1506 2.9385 1.4187 6 6 3.4957 3.2836 2.8687 7 6 2.0634 -1.3051 0.0006 8 8 1.1349 -2.3912 0.0017 9 6 1.6534 -3.6450 0.0018 10 6 3.0350 -3.8232 -0.0049 11 6 3.5646 -5.0806 0.0001 12 6 2.7102 -6.2001 0.0012 13 6 3.2498 -7.5050 0.0004 14 1 2.6697 -8.3291 -0.3878 15 6 4.5361 -7.7304 0.5023 16 7 5.1006 -6.8406 1.2788 17 14 5.4477 -9.3009 0.0647 18 1 5.6186 -9.3799 -1.4084 19 1 6.7809 -9.2980 0.7186 20 1 4.6681 -10.4736 0.5361 21 6 1.3146 -6.0112 0.0026 22 6 0.8012 -4.7471 0.0034 23 1 -0.5400 0.9353 0.0004 24 1 -0.5401 -0.9353 0.0004 25 1 2.9742 1.1988 -0.5895 26 1 1.4386 2.0854 -0.4343 27 1 2.9382 0.9319 1.8259 28 1 4.0689 2.8432 0.8392 29 1 2.5336 3.7304 0.9941 30 1 4.1125 2.4918 3.2937 31 1 4.0427 4.2260 2.8978 32 1 2.5772 3.3790 3.4479 33 1 2.6901 -1.3625 0.8905 34 1 2.6901 -1.3633 -0.8894 35 1 3.6888 -2.9635 -0.0097 36 1 4.6359 -5.2170 -0.0009 37 1 5.9926 -6.9967 1.6265 38 1 0.6525 -6.8645 0.0031 39 1 -0.2688 -4.6004 0.0040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231511740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:20 Heat of formation + Delta-G solvation = -7.776968 kcal Electronic energy + Delta-G solvation = -18537.607580 eV Core-core repulsion = 15638.334196 eV Total energy + Delta-G solvation = -2899.273384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.96232 -37.38651 -36.31513 -34.07360 -33.17152 -30.06024 -29.66163 -29.05079 -26.51315 -25.08116 -24.42700 -22.23782 -21.18698 -20.60261 -18.29202 -17.36146 -16.97242 -16.00044 -15.47781 -15.41999 -15.04738 -14.80113 -14.33190 -13.94384 -13.74330 -12.91385 -12.81506 -12.56539 -12.39012 -12.20362 -11.86683 -11.79114 -11.65828 -11.40610 -11.19213 -11.10510 -11.03229 -10.72215 -10.62814 -10.03057 -9.80402 -9.36824 -9.06749 -8.92302 -8.58055 -7.65068 -7.01151 -6.72726 -4.24969 2.31288 2.78295 2.97100 3.07395 3.10230 3.22751 3.94732 3.97674 4.22387 4.61911 4.79512 4.94043 5.02518 5.22563 5.27022 5.36193 5.54408 5.60125 5.66042 5.68105 5.76184 5.79313 5.95962 6.07420 6.13913 6.30664 6.65418 6.71025 6.86142 6.89828 6.99159 7.07163 7.19626 7.28472 7.42711 7.56259 7.91362 8.00295 8.15846 8.45354 8.65574 8.90306 8.99734 10.22022 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.003669 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.469129 B = 7629.388647 C = 8453.517696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.144 4.144 3 C 0.102 3.898 4 N -0.688 5.688 5 C 0.052 3.948 6 C -0.151 4.151 7 C 0.106 3.894 8 O -0.325 6.325 9 C -0.008 4.008 10 C -0.174 4.174 11 C -0.134 4.134 12 C 0.088 3.912 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.075 3.925 16 N -0.800 5.800 17 Si 0.908 3.092 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.196 4.196 22 C -0.112 4.112 23 H 0.094 0.906 24 H 0.112 0.888 25 H 0.035 0.965 26 H 0.080 0.920 27 H 0.344 0.656 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.280 0.720 38 H 0.100 0.900 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.093 14.036 -0.616 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C -0.026 4.026 4 N -0.320 5.320 5 C -0.077 4.077 6 C -0.209 4.209 7 C 0.030 3.970 8 O -0.241 6.241 9 C -0.051 4.051 10 C -0.193 4.193 11 C -0.154 4.154 12 C 0.085 3.915 13 C -0.494 4.494 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.426 5.426 17 Si 0.732 3.268 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.216 4.216 22 C -0.131 4.131 23 H 0.113 0.887 24 H 0.130 0.870 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.162 0.838 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.663 14.429 -0.340 14.528 hybrid contribution 1.684 -0.949 -0.395 1.973 sum 0.020 13.480 -0.734 13.500 Atomic orbital electron populations 1.23742 0.95366 1.02067 0.97100 1.21434 0.95967 0.93240 1.03844 1.20834 0.98267 0.94060 0.89452 1.60574 1.48821 1.05468 1.17089 1.21936 0.95995 0.92442 0.97305 1.21771 1.01892 1.01149 0.96086 1.21107 0.91245 0.84211 1.00419 1.85749 1.34482 1.12503 1.91366 1.18551 0.91901 0.82468 1.12203 1.20606 0.92812 0.97807 1.08041 1.20936 1.00126 0.90682 1.03617 1.17587 0.90625 0.93502 0.89754 1.19440 0.99171 0.94345 1.36432 0.90524 1.25878 0.97487 0.98204 0.92617 1.69843 1.14903 1.35099 1.22785 0.86382 0.78568 0.81946 0.79883 1.18914 1.20432 1.19055 1.20596 0.95262 0.94450 1.11303 1.19603 0.96985 0.90907 1.05634 0.88722 0.86961 0.94638 0.90207 0.83759 0.95378 0.91126 0.92674 0.92257 0.91765 0.92431 0.92481 0.88886 0.86150 0.90964 0.88212 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 13.66 29.01 0.40 -1.60 16 2 C -0.14 -2.02 5.56 -101.07 -0.56 -2.58 16 3 C 0.10 1.16 5.85 -4.98 -0.03 1.13 16 4 N -0.69 -7.66 6.49 -115.06 -0.75 -8.41 16 5 C 0.05 0.47 6.40 -3.82 -0.02 0.45 16 6 C -0.15 -1.23 10.17 37.16 0.38 -0.85 16 7 C 0.11 1.77 5.15 36.00 0.19 1.96 16 8 O -0.32 -6.67 8.52 -18.73 -0.16 -6.83 16 9 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 10 C -0.17 -4.11 8.96 -39.83 -0.36 -4.47 16 11 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 12 C 0.09 2.35 5.57 -106.81 -0.60 1.76 16 13 C -0.46 -12.36 9.04 -37.83 -0.34 -12.70 16 14 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 15 C 0.07 1.89 5.13 -17.33 -0.09 1.80 16 16 N -0.80 -20.77 10.96 55.55 0.61 -20.16 16 17 Si 0.91 18.73 29.60 -169.99 -5.03 13.70 16 18 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 22 C -0.11 -2.64 9.92 -39.83 -0.40 -3.03 16 23 H 0.09 1.10 7.99 -52.49 -0.42 0.68 16 24 H 0.11 1.73 6.84 -52.49 -0.36 1.37 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.82 7.99 -51.93 -0.41 0.41 16 27 H 0.34 3.92 8.72 -39.29 -0.34 3.57 16 28 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.96 7.66 -51.93 -0.40 0.56 16 34 H 0.06 0.93 7.63 -51.93 -0.40 0.54 16 35 H 0.09 1.96 6.27 -52.48 -0.33 1.63 16 36 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 37 H 0.28 6.62 8.30 -40.82 -0.34 6.29 16 38 H 0.10 2.30 8.06 -52.48 -0.42 1.87 16 39 H 0.10 2.04 8.06 -52.48 -0.42 1.61 16 LS Contribution 327.84 15.07 4.94 4.94 Total: -1.00 -27.90 327.84 -8.72 -36.62 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.91 Total: 7.83 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: -2.42 Total: -27.69 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: -0.14 Total: -28.57 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.16 Total: -6.83 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.90 -8.72 -36.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231511740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.842 kcal (2) G-P(sol) polarization free energy of solvation -27.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds