Wall clock time and date at job start Mon Mar 30 2020 06:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99967 * 2 1 4 4 N 1.46901 * 109.46988 * 95.00312 * 3 2 1 5 5 C 1.46899 * 110.99668 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47254 * 179.97438 * 5 4 3 7 7 C 1.50696 * 119.99575 * 179.97438 * 2 1 3 8 8 O 1.42891 * 109.47630 * 359.97438 * 7 2 1 9 9 C 1.35675 * 117.00274 * 179.97438 * 8 7 2 10 10 C 1.39309 * 119.81792 * 359.72912 * 9 8 7 11 11 C 1.36442 * 120.18591 * 179.76216 * 10 9 8 12 12 C 1.40829 * 119.80887 * 0.50266 * 11 10 9 13 13 C 1.41215 * 120.18027 * 179.72335 * 12 11 10 14 14 H 1.07996 * 120.00243 * 204.57503 * 13 12 11 15 15 C 1.39894 * 119.99995 * 24.56612 * 13 12 11 16 16 N 1.30892 * 119.99319 * 17.93023 * 15 13 12 17 17 Si 1.86793 * 120.00405 * 197.92293 * 15 13 12 18 18 H 1.48507 * 109.47077 * 60.00475 * 17 15 13 19 19 H 1.48499 * 109.47223 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47405 * 300.00438 * 17 15 13 21 21 C 1.40832 * 119.64320 * 359.74800 * 12 11 10 22 22 C 1.36434 * 119.81204 * 359.97438 * 21 12 11 23 23 H 1.07999 * 119.99978 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.00415 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46785 * 215.00348 * 3 2 1 26 26 H 1.08997 * 109.47312 * 334.99803 * 3 2 1 27 27 H 1.00894 * 111.00387 * 56.04406 * 4 3 2 28 28 H 1.08998 * 109.47524 * 299.99712 * 5 4 3 29 29 H 1.08997 * 109.47319 * 59.99980 * 5 4 3 30 30 H 1.08997 * 109.46939 * 59.99790 * 6 5 4 31 31 H 1.09000 * 109.47638 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.46656 * 300.00287 * 6 5 4 33 33 H 1.09000 * 109.47473 * 239.99492 * 7 2 1 34 34 H 1.09006 * 109.47041 * 120.00311 * 7 2 1 35 35 H 1.08003 * 119.90634 * 0.02562 * 10 9 8 36 36 H 1.07997 * 120.09277 * 180.25590 * 11 10 9 37 37 H 0.97004 * 119.99134 * 180.02562 * 16 15 13 38 38 H 1.08008 * 120.09588 * 179.97438 * 21 12 11 39 39 H 1.08006 * 119.90602 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.4129 1.6688 1.3797 5 6 3.1506 2.9385 1.4187 6 6 3.4957 3.2836 2.8687 7 6 2.0634 -1.3051 0.0006 8 8 1.1349 -2.3912 0.0017 9 6 1.6534 -3.6450 0.0018 10 6 3.0350 -3.8232 -0.0049 11 6 3.5646 -5.0806 0.0001 12 6 2.7102 -6.2001 0.0012 13 6 3.2498 -7.5050 0.0004 14 1 2.6697 -8.3291 -0.3878 15 6 4.5361 -7.7304 0.5023 16 7 5.1006 -6.8406 1.2788 17 14 5.4477 -9.3009 0.0647 18 1 5.6186 -9.3799 -1.4084 19 1 6.7809 -9.2980 0.7186 20 1 4.6681 -10.4736 0.5361 21 6 1.3146 -6.0112 0.0026 22 6 0.8012 -4.7471 0.0034 23 1 -0.5400 0.9353 0.0004 24 1 -0.5401 -0.9353 0.0004 25 1 2.9742 1.1988 -0.5895 26 1 1.4386 2.0854 -0.4343 27 1 2.9382 0.9319 1.8259 28 1 4.0689 2.8432 0.8392 29 1 2.5336 3.7304 0.9941 30 1 4.1125 2.4918 3.2937 31 1 4.0427 4.2260 2.8978 32 1 2.5772 3.3790 3.4479 33 1 2.6901 -1.3625 0.8905 34 1 2.6901 -1.3633 -0.8894 35 1 3.6888 -2.9635 -0.0097 36 1 4.6359 -5.2170 -0.0009 37 1 5.9926 -6.9967 1.6265 38 1 0.6525 -6.8645 0.0031 39 1 -0.2688 -4.6004 0.0040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231511740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:19 Heat of formation + Delta-G solvation = -23.137890 kcal Electronic energy + Delta-G solvation = -18538.273680 eV Core-core repulsion = 15638.334196 eV Total energy + Delta-G solvation = -2899.939484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63805 -38.69061 -37.72349 -35.45536 -34.72682 -31.56721 -31.21387 -30.59162 -27.94021 -26.61002 -25.65361 -23.07335 -22.94672 -22.41284 -19.49017 -19.27676 -18.65823 -17.15698 -16.80485 -16.73353 -16.49907 -15.84605 -15.75873 -15.56514 -14.85616 -14.69228 -14.21747 -13.97051 -13.73363 -13.51786 -13.37579 -13.11925 -12.91715 -12.75825 -12.64643 -12.41753 -12.27118 -12.00891 -11.85090 -11.78465 -11.65710 -11.23067 -10.89063 -10.10073 -9.57652 -9.40953 -8.92340 -8.60724 -6.23265 0.93271 1.03746 1.23331 1.39472 1.50098 1.54469 2.22549 2.51676 2.71923 3.35229 3.69679 3.80821 4.03809 4.24220 4.25570 4.30820 4.32937 4.39879 4.43264 4.51145 4.60605 4.72444 4.87378 4.96184 4.97092 5.07011 5.10721 5.14997 5.31728 5.36350 5.48688 5.62291 5.65315 5.87975 5.96941 6.03563 6.06045 6.23404 6.34109 6.55656 6.78564 6.94498 7.09154 8.36025 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.003669 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.469129 B = 7629.388647 C = 8453.517696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.147 4.147 3 C 0.109 3.891 4 N -0.698 5.698 5 C 0.052 3.948 6 C -0.149 4.149 7 C 0.099 3.901 8 O -0.328 6.328 9 C -0.002 4.002 10 C -0.176 4.176 11 C -0.155 4.155 12 C 0.055 3.945 13 C -0.500 4.500 14 H 0.077 0.923 15 C 0.034 3.966 16 N -0.831 5.831 17 Si 0.982 3.018 18 H -0.261 1.261 19 H -0.268 1.268 20 H -0.260 1.260 21 C -0.206 4.206 22 C -0.120 4.120 23 H 0.120 0.880 24 H 0.093 0.907 25 H 0.041 0.959 26 H 0.095 0.905 27 H 0.340 0.660 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.287 0.713 38 H 0.111 0.889 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.983 15.140 -0.836 15.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C -0.020 4.020 4 N -0.330 5.330 5 C -0.077 4.077 6 C -0.206 4.206 7 C 0.023 3.977 8 O -0.244 6.244 9 C -0.046 4.046 10 C -0.195 4.195 11 C -0.175 4.175 12 C 0.053 3.947 13 C -0.530 4.530 14 H 0.095 0.905 15 C -0.180 4.180 16 N -0.458 5.458 17 Si 0.803 3.197 18 H -0.186 1.186 19 H -0.193 1.193 20 H -0.184 1.184 21 C -0.225 4.225 22 C -0.138 4.138 23 H 0.138 0.862 24 H 0.111 0.889 25 H 0.059 0.941 26 H 0.113 0.887 27 H 0.158 0.842 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.129 0.871 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.568 15.561 -0.558 15.650 hybrid contribution 1.568 -1.144 -0.305 1.965 sum 0.000 14.417 -0.864 14.443 Atomic orbital electron populations 1.23820 0.95352 1.02418 0.96693 1.21486 0.96107 0.92922 1.04222 1.20810 0.98446 0.92873 0.89835 1.60613 1.49402 1.06098 1.16866 1.22003 0.96126 0.91617 0.97945 1.21756 1.01678 1.01787 0.95407 1.21366 0.91383 0.84267 1.00644 1.85762 1.35576 1.12144 1.90958 1.18683 0.91673 0.83755 1.10446 1.20807 0.93623 0.97736 1.07314 1.20909 0.99527 0.91668 1.05403 1.17952 0.91746 0.94127 0.90869 1.19708 1.00714 0.94494 1.38081 0.90529 1.26736 0.97706 1.01757 0.91811 1.69896 1.15496 1.37053 1.23317 0.85252 0.77400 0.77479 0.79564 1.18578 1.19283 1.18407 1.20808 0.94868 0.95617 1.11220 1.19891 0.98383 0.90577 1.04987 0.86174 0.88869 0.94097 0.88660 0.84229 0.94935 0.90336 0.93132 0.90703 0.92406 0.92430 0.92052 0.86659 0.87544 0.90246 0.87136 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 13.66 67.78 0.93 -2.80 16 2 C -0.15 -3.83 5.56 -16.49 -0.09 -3.93 16 3 C 0.11 2.21 5.85 85.56 0.50 2.71 16 4 N -0.70 -14.20 6.49 -517.94 -3.36 -17.56 16 5 C 0.05 0.83 6.40 86.30 0.55 1.38 16 6 C -0.15 -2.15 10.17 71.98 0.73 -1.42 16 7 C 0.10 3.17 5.15 71.23 0.37 3.54 16 8 O -0.33 -13.16 8.52 -89.93 -0.77 -13.92 16 9 C 0.00 -0.08 6.71 22.79 0.15 0.07 16 10 C -0.18 -8.36 8.96 22.11 0.20 -8.16 16 11 C -0.16 -8.32 8.64 22.48 0.19 -8.12 16 12 C 0.06 3.04 5.57 -21.28 -0.12 2.92 16 13 C -0.50 -27.28 9.04 23.40 0.21 -27.06 16 14 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 15 C 0.03 1.72 5.13 85.23 0.44 2.16 16 16 N -0.83 -43.84 10.96 21.82 0.24 -43.60 16 17 Si 0.98 38.45 29.60 68.60 2.03 40.48 16 18 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 19 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 21 C -0.21 -10.32 9.74 22.48 0.22 -10.10 16 22 C -0.12 -5.57 9.92 22.11 0.22 -5.35 16 23 H 0.12 2.45 7.99 -2.91 -0.02 2.43 16 24 H 0.09 2.76 6.84 -2.91 -0.02 2.74 16 25 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.10 1.67 7.99 -2.39 -0.02 1.65 16 27 H 0.34 7.28 8.72 -89.70 -0.78 6.50 16 28 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.86 7.66 -2.39 -0.02 1.84 16 34 H 0.06 1.93 7.63 -2.38 -0.02 1.91 16 35 H 0.12 4.81 6.27 -2.91 -0.02 4.79 16 36 H 0.11 5.90 6.16 -2.91 -0.02 5.88 16 37 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 38 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 39 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -59.83 327.84 2.89 -56.94 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.25 Total: 31.85 kcal Atomic # 6 Polarization: -58.67 SS G_CDS: 4.50 Total: -54.17 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -3.12 Total: -61.17 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.77 Total: -13.92 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -59.83 2.89 -56.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231511740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.798 kcal (2) G-P(sol) polarization free energy of solvation -59.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds