Wall clock time and date at job start Mon Mar 30 2020 06:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46892 * 109.47445 * 2 1 4 4 C 1.46900 * 111.00100 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47404 * 325.00128 * 4 3 2 6 6 C 1.53001 * 109.47000 * 85.00190 * 4 3 2 7 7 C 1.50699 * 109.46897 * 205.00077 * 4 3 2 8 8 C 1.32642 * 119.99815 * 120.00371 * 7 4 3 9 9 C 1.47726 * 120.00029 * 179.97438 * 8 7 4 10 10 C 1.39646 * 120.07405 * 359.72089 * 9 8 7 11 11 C 1.37778 * 119.92763 * 179.78529 * 10 9 8 12 12 C 1.39029 * 120.07405 * 0.49100 * 11 10 9 13 13 O 1.35683 * 119.92885 * 179.76190 * 12 11 10 14 14 C 1.34810 * 116.99810 * 174.42865 * 13 12 11 15 15 H 1.07999 * 120.00471 * 5.06104 * 14 13 12 16 16 C 1.38651 * 119.99556 * 185.05678 * 14 13 12 17 17 N 1.31557 * 120.00006 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99785 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47145 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47254 * 119.99928 * 18 16 14 21 21 H 1.48504 * 109.47057 * 240.00068 * 18 16 14 22 22 C 1.39032 * 120.14329 * 359.74263 * 12 11 10 23 23 C 1.37780 * 120.07895 * 0.02562 * 22 12 11 24 24 H 1.08996 * 109.47605 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47110 * 300.00423 * 1 2 3 26 26 H 1.09009 * 109.47191 * 60.00004 * 1 2 3 27 27 H 1.08998 * 109.46674 * 239.99750 * 2 1 3 28 28 H 1.08999 * 109.46663 * 120.00567 * 2 1 3 29 29 H 1.00900 * 111.00346 * 303.95441 * 3 2 1 30 30 H 1.08997 * 109.47145 * 179.97438 * 6 4 3 31 31 H 1.09001 * 109.46784 * 299.99863 * 6 4 3 32 32 H 1.08994 * 109.47093 * 59.99747 * 6 4 3 33 33 H 1.08002 * 120.00472 * 299.99267 * 7 4 3 34 34 H 1.08000 * 120.00222 * 359.97438 * 8 7 4 35 35 H 1.07998 * 120.03295 * 0.02562 * 10 9 8 36 36 H 1.08000 * 119.96109 * 180.21112 * 11 10 9 37 37 H 0.97003 * 119.99846 * 180.02562 * 17 16 14 38 38 H 1.08003 * 119.96549 * 179.97438 * 22 12 11 39 39 H 1.08000 * 120.04281 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4882 1.4240 0.0006 5 1 3.8736 0.5923 0.5903 6 6 4.0020 1.3118 -1.4362 7 6 3.9557 2.7247 0.6011 8 6 4.7184 2.7179 1.6863 9 6 5.1772 3.9929 2.2747 10 6 4.8137 5.2061 1.6862 11 6 5.2397 6.3936 2.2400 12 6 6.0389 6.3847 3.3776 13 8 6.4607 7.5558 3.9177 14 6 7.1346 7.4846 5.0831 15 1 7.3879 6.5222 5.5026 16 6 7.5027 8.6471 5.7431 17 7 7.1947 9.8195 5.2318 18 14 8.4371 8.5486 7.3575 19 1 8.6594 7.1244 7.7147 20 1 9.7468 9.2336 7.2140 21 1 7.6475 9.2093 8.4277 22 6 6.4066 5.1785 3.9632 23 6 5.9802 3.9876 3.4172 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6443 1.9012 -0.7813 30 1 5.0915 1.3413 -1.4358 31 1 3.6637 0.3710 -1.8705 32 1 3.6165 2.1435 -2.0259 33 1 3.6701 3.6624 0.1478 34 1 5.0039 1.7803 2.1399 35 1 4.1963 5.2135 0.8002 36 1 4.9561 7.3322 1.7873 37 1 7.4525 10.6327 5.6934 38 1 7.0279 5.1750 4.8466 39 1 6.2665 3.0509 3.8723 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231758946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:27 Heat of formation + Delta-G solvation = 2.097520 kcal Electronic energy + Delta-G solvation = -18207.669539 eV Core-core repulsion = 15308.824345 eV Total energy + Delta-G solvation = -2898.845194 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.04211 -37.83336 -36.61554 -33.78839 -32.35497 -31.24241 -30.24347 -28.18379 -27.48810 -25.45578 -23.19669 -22.17814 -22.09658 -20.67518 -19.24303 -17.85738 -16.98006 -15.78178 -15.67823 -14.97390 -14.70395 -14.47804 -14.29231 -13.65513 -13.62153 -13.38763 -13.05881 -12.86124 -12.55995 -12.42769 -12.01510 -11.87929 -11.68527 -11.60269 -11.58533 -11.37541 -11.06833 -11.01268 -10.64787 -10.45529 -10.36047 -9.38149 -9.33108 -8.70487 -8.49476 -8.20910 -6.90550 -6.49337 -4.06105 1.70878 2.25153 3.02355 3.12010 3.17812 3.19969 3.93918 4.16197 4.67146 4.75899 4.91110 4.95761 5.07277 5.12050 5.19522 5.24311 5.25495 5.42217 5.52062 5.57388 5.66413 5.74061 5.78496 5.83746 5.88955 5.97845 5.99765 6.17768 6.34311 6.65066 6.79570 6.85345 6.94377 7.03439 7.11584 7.26355 7.30669 7.41311 7.50102 7.81848 7.96258 8.96266 9.66117 10.68438 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.044846 B = 0.003002 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.205645 B = 9326.105849 C = 9419.843729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 N -0.682 5.682 4 C 0.120 3.880 5 H 0.075 0.925 6 C -0.178 4.178 7 C -0.179 4.179 8 C -0.069 4.069 9 C -0.165 4.165 10 C -0.060 4.060 11 C -0.195 4.195 12 C 0.158 3.842 13 O -0.174 6.174 14 C -0.391 4.391 15 H 0.094 0.906 16 C 0.039 3.961 17 N -0.860 5.860 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.237 4.237 23 C -0.055 4.055 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.339 0.661 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.270 0.730 38 H 0.128 0.872 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 -16.294 -9.083 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 N -0.313 5.313 4 C 0.011 3.989 5 H 0.094 0.906 6 C -0.237 4.237 7 C -0.197 4.197 8 C -0.088 4.088 9 C -0.166 4.166 10 C -0.078 4.078 11 C -0.214 4.214 12 C 0.103 3.897 13 O -0.076 6.076 14 C -0.467 4.467 15 H 0.111 0.889 16 C -0.166 4.166 17 N -0.494 5.494 18 Si 0.767 3.233 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.256 4.256 23 C -0.074 4.074 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.157 0.843 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.146 0.854 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.209 -15.736 -8.400 19.239 hybrid contribution 0.704 -0.317 -0.077 0.776 sum -6.505 -16.053 -8.477 19.284 Atomic orbital electron populations 1.21774 0.95093 1.01512 1.02478 1.21939 0.95576 0.89873 1.00203 1.60613 1.07583 1.13059 1.50067 1.20506 0.86989 0.96554 0.94843 0.90637 1.22456 1.02488 1.01200 0.97524 1.22794 1.01185 0.97137 0.98600 1.21490 0.96876 0.95675 0.94752 1.18501 1.06288 0.92325 0.99488 1.20782 0.97744 0.91231 0.98039 1.20154 1.04438 0.98172 0.98620 1.19496 0.91344 0.86499 0.92349 1.83951 1.62598 1.25390 1.35691 1.21423 1.33719 0.94726 0.96860 0.88852 1.25324 0.97636 0.94154 0.99461 1.70050 1.43348 0.97448 1.38588 0.85624 0.78813 0.78890 0.79977 1.19036 1.20094 1.20073 1.21103 1.08081 0.91993 1.04410 1.20864 0.95356 0.96846 0.94298 0.92392 0.91688 0.92940 0.95627 0.91169 0.84266 0.91720 0.93137 0.92339 0.87274 0.87867 0.86756 0.86441 0.91967 0.85438 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.17 37.16 0.38 -0.75 16 2 C 0.05 0.46 6.20 -3.83 -0.02 0.44 16 3 N -0.68 -7.00 6.23 -107.96 -0.67 -7.67 16 4 C 0.12 1.29 2.96 -68.86 -0.20 1.09 16 5 H 0.08 0.81 7.46 -51.93 -0.39 0.43 16 6 C -0.18 -1.62 9.14 37.16 0.34 -1.28 16 7 C -0.18 -2.35 8.52 -36.21 -0.31 -2.66 16 8 C -0.07 -1.02 9.52 -37.60 -0.36 -1.38 16 9 C -0.17 -2.98 5.87 -104.97 -0.62 -3.59 16 10 C -0.06 -1.11 9.39 -39.22 -0.37 -1.48 16 11 C -0.19 -4.19 9.97 -39.46 -0.39 -4.59 16 12 C 0.16 3.85 6.65 -38.99 -0.26 3.59 16 13 O -0.17 -4.97 9.75 0.31 0.00 -4.96 16 14 C -0.39 -10.92 9.48 30.88 0.29 -10.62 16 15 H 0.09 2.41 5.19 -52.49 -0.27 2.14 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.13 13.67 55.48 0.76 -24.37 16 18 Si 0.94 20.42 29.55 -169.99 -5.02 15.39 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 22 C -0.24 -5.21 9.15 -39.45 -0.36 -5.57 16 23 C -0.06 -1.05 9.78 -39.22 -0.38 -1.43 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.37 8.14 -51.92 -0.42 -0.06 16 27 H 0.03 0.20 7.44 -51.93 -0.39 -0.18 16 28 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 29 H 0.34 3.14 8.47 -39.29 -0.33 2.80 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.41 7.45 -51.93 -0.39 0.02 16 32 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 33 H 0.11 1.47 6.03 -52.49 -0.32 1.15 16 34 H 0.10 1.37 7.86 -52.49 -0.41 0.96 16 35 H 0.11 1.81 6.16 -52.49 -0.32 1.49 16 36 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 37 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.13 2.79 5.62 -52.48 -0.29 2.49 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 327.69 15.07 4.94 4.94 Total: -1.00 -29.99 327.69 -7.98 -37.98 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.63 Total: 5.98 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -2.36 Total: -27.28 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.09 Total: -32.05 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: 0.00 Total: -4.96 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.99 -7.98 -37.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231758946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.073 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds