Wall clock time and date at job start Mon Mar 30 2020 06:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46899 * 109.47319 * 2 1 4 4 C 1.46902 * 110.99830 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47484 * 34.99990 * 4 3 2 6 6 C 1.52996 * 109.47154 * 274.99113 * 4 3 2 7 7 C 1.50710 * 109.46954 * 154.99986 * 4 3 2 8 8 C 1.32671 * 119.99558 * 244.99971 * 7 4 3 9 9 C 1.47676 * 119.99774 * 180.02562 * 8 7 4 10 10 C 1.39501 * 120.18395 * 359.71454 * 9 8 7 11 11 C 1.37952 * 119.92637 * 179.75074 * 10 9 8 12 12 C 1.38483 * 120.29264 * 0.53334 * 11 10 9 13 13 C 1.38119 * 120.36985 * 359.74518 * 12 11 10 14 14 C 1.38734 * 120.06853 * 359.97395 * 13 12 11 15 15 O 1.35645 * 120.14576 * 180.02562 * 14 13 12 16 16 C 1.34808 * 117.00050 * 354.40611 * 15 14 13 17 17 H 1.08004 * 119.99717 * 5.05743 * 16 15 14 18 18 C 1.38648 * 119.99963 * 185.06434 * 16 15 14 19 19 N 1.31556 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47188 * 60.00102 * 20 18 16 22 22 H 1.48507 * 109.46842 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47128 * 299.99726 * 20 18 16 24 24 H 1.08997 * 109.47174 * 60.00077 * 1 2 3 25 25 H 1.09006 * 109.47201 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46887 * 300.00205 * 1 2 3 27 27 H 1.09007 * 109.47178 * 119.99914 * 2 1 3 28 28 H 1.08998 * 109.47140 * 239.99345 * 2 1 3 29 29 H 1.00907 * 110.99291 * 303.94723 * 3 2 1 30 30 H 1.08995 * 109.47642 * 300.00781 * 6 4 3 31 31 H 1.09007 * 109.46693 * 60.00141 * 6 4 3 32 32 H 1.09003 * 109.47668 * 180.02562 * 6 4 3 33 33 H 1.07995 * 120.00337 * 64.99414 * 7 4 3 34 34 H 1.08004 * 120.00270 * 359.97438 * 8 7 4 35 35 H 1.08001 * 120.03554 * 0.03115 * 10 9 8 36 36 H 1.07994 * 119.85411 * 180.25845 * 11 10 9 37 37 H 1.07993 * 119.81486 * 179.76847 * 12 11 10 38 38 H 1.07994 * 119.96530 * 180.02562 * 13 12 11 39 39 H 0.96998 * 119.99677 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 -0.0006 5 1 3.8736 0.5924 -0.5903 6 6 4.0019 1.3120 1.4361 7 6 3.9558 2.7249 -0.6011 8 6 4.6345 2.7231 -1.7411 9 6 5.0932 3.9976 -2.3293 10 6 4.8099 5.2061 -1.6926 11 6 5.2454 6.3932 -2.2440 12 6 5.9540 6.3922 -3.4339 13 6 6.2363 5.2033 -4.0775 14 6 5.8106 4.0002 -3.5335 15 8 6.0875 2.8315 -4.1640 16 6 6.6779 2.9134 -5.3732 17 1 6.9830 3.8741 -5.7611 18 6 6.8933 1.7645 -6.1187 19 7 6.5210 0.5944 -5.6463 20 14 7.7108 1.8781 -7.7944 21 1 9.0652 2.4682 -7.6455 22 1 7.8242 0.5193 -8.3830 23 1 6.8920 2.7369 -8.6874 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.6442 1.9012 -0.7815 30 1 3.6165 2.1437 2.0258 31 1 3.6636 0.3712 1.8705 32 1 5.0915 1.3414 1.4358 33 1 3.7383 3.6584 -0.1036 34 1 4.8522 1.7894 -2.2385 35 1 4.2540 5.2119 -0.7666 36 1 5.0290 7.3277 -1.7480 37 1 6.2880 7.3263 -3.8606 38 1 6.7897 5.2101 -5.0049 39 1 6.6720 -0.2094 -6.1677 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231758953.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:32 Heat of formation + Delta-G solvation = -15.320437 kcal Electronic energy + Delta-G solvation = -18838.186417 eV Core-core repulsion = 15938.585923 eV Total energy + Delta-G solvation = -2899.600494 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84127 -38.74556 -38.04326 -35.17886 -34.32784 -32.78513 -30.68589 -29.62629 -29.02579 -27.34333 -24.75198 -23.44323 -22.85244 -21.81408 -20.44337 -19.74223 -18.80048 -17.21762 -16.62880 -16.43548 -16.13807 -15.86097 -15.57681 -15.34823 -15.19889 -14.69862 -14.42553 -14.16224 -13.57355 -13.40473 -13.32750 -13.12436 -13.08068 -12.60186 -12.52763 -12.47445 -12.34920 -12.24835 -12.09990 -11.95657 -11.58732 -11.18100 -11.06010 -10.82170 -9.49331 -9.35851 -8.69793 -8.50253 -6.16973 0.11812 0.73179 1.32631 1.43609 1.48728 1.62865 2.14988 2.85474 3.19868 3.29515 3.46253 3.73411 3.99334 4.17728 4.21605 4.25150 4.28667 4.41828 4.48636 4.56280 4.60657 4.63399 4.72075 4.83541 4.97737 5.05693 5.07669 5.08995 5.10712 5.29323 5.29377 5.34815 5.44694 5.58060 5.74413 5.76953 5.88886 6.01598 6.10223 6.23019 6.40480 6.94394 7.75262 8.72204 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015106 B = 0.005289 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.131789 B = 5293.048148 C = 6684.451563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 N -0.678 5.678 4 C 0.115 3.885 5 H 0.022 0.978 6 C -0.127 4.127 7 C -0.158 4.158 8 C -0.092 4.092 9 C -0.151 4.151 10 C -0.065 4.065 11 C -0.191 4.191 12 C -0.069 4.069 13 C -0.249 4.249 14 C 0.119 3.881 15 O -0.221 6.221 16 C -0.417 4.417 17 H 0.101 0.899 18 C -0.020 4.020 19 N -0.918 5.918 20 Si 1.017 2.983 21 H -0.257 1.257 22 H -0.272 1.272 23 H -0.257 1.257 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.014 0.986 29 H 0.341 0.659 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.137 0.863 34 H 0.077 0.923 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.119 0.881 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 5.178 9.616 12.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 N -0.310 5.310 4 C 0.006 3.994 5 H 0.040 0.960 6 C -0.185 4.185 7 C -0.176 4.176 8 C -0.111 4.111 9 C -0.153 4.153 10 C -0.082 4.082 11 C -0.209 4.209 12 C -0.087 4.087 13 C -0.269 4.269 14 C 0.068 3.932 15 O -0.127 6.127 16 C -0.492 4.492 17 H 0.118 0.882 18 C -0.218 4.218 19 N -0.556 5.556 20 Si 0.836 3.164 21 H -0.181 1.181 22 H -0.196 1.196 23 H -0.182 1.182 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.032 0.968 29 H 0.159 0.841 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.155 0.845 34 H 0.095 0.905 35 H 0.169 0.831 36 H 0.172 0.828 37 H 0.164 0.836 38 H 0.137 0.863 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.980 4.769 10.316 13.337 hybrid contribution 0.852 -0.750 -2.105 2.392 sum -6.128 4.019 8.211 11.005 Atomic orbital electron populations 1.21716 0.93380 1.02494 1.02425 1.22063 0.96923 0.89092 1.00086 1.60781 1.06475 1.14047 1.49680 1.20514 0.88121 0.93532 0.97203 0.96026 1.21678 1.00042 1.02635 0.94113 1.23219 0.99810 0.99196 0.95357 1.21412 0.98463 0.95148 0.96117 1.18539 1.05809 0.95083 0.95835 1.21280 0.97553 0.90265 0.99136 1.21150 1.03558 0.98556 0.97617 1.21275 0.95818 0.96833 0.94816 1.21284 1.08932 0.92821 1.03818 1.20076 0.93547 0.86694 0.92868 1.83896 1.70039 1.27008 1.31712 1.21808 1.38567 0.96266 0.92609 0.88157 1.26563 0.97857 0.93496 1.03867 1.70178 1.46377 0.98951 1.40071 0.84669 0.78727 0.78346 0.74627 1.18104 1.19626 1.18179 0.93031 0.90990 0.91411 0.90480 0.96794 0.84135 0.90985 0.92099 0.92715 0.84531 0.90518 0.83099 0.82802 0.83619 0.86315 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 10.17 71.98 0.73 -1.92 16 2 C 0.05 1.11 6.20 86.30 0.54 1.64 16 3 N -0.68 -17.59 6.30 -495.45 -3.12 -20.71 16 4 C 0.12 3.37 2.98 44.17 0.13 3.51 16 5 H 0.02 0.74 7.47 -2.39 -0.02 0.73 16 6 C -0.13 -3.08 9.40 71.98 0.68 -2.41 16 7 C -0.16 -5.05 8.17 24.52 0.20 -4.85 16 8 C -0.09 -3.82 9.26 23.60 0.22 -3.61 16 9 C -0.15 -6.53 5.88 -20.01 -0.12 -6.65 16 10 C -0.06 -2.16 9.40 22.51 0.21 -1.95 16 11 C -0.19 -5.75 10.03 22.26 0.22 -5.53 16 12 C -0.07 -2.35 10.03 22.30 0.22 -2.13 16 13 C -0.25 -10.93 9.16 22.36 0.20 -10.73 16 14 C 0.12 6.02 6.66 22.86 0.15 6.17 16 15 O -0.22 -13.32 8.94 -21.36 -0.19 -13.51 16 16 C -0.42 -24.37 9.49 67.92 0.64 -23.72 16 17 H 0.10 5.39 5.21 -2.91 -0.02 5.37 16 18 C -0.02 -1.14 5.49 84.83 0.47 -0.67 16 19 N -0.92 -56.46 13.67 21.61 0.30 -56.17 16 20 Si 1.02 42.93 29.55 68.60 2.03 44.95 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 24 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 1.68 7.44 -2.38 -0.02 1.66 16 28 H 0.01 0.37 8.05 -2.39 -0.02 0.35 16 29 H 0.34 9.06 8.35 -89.69 -0.75 8.31 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.34 7.45 -2.38 -0.02 1.32 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.14 3.72 6.04 -2.91 -0.02 3.70 16 34 H 0.08 3.82 7.45 -2.91 -0.02 3.80 16 35 H 0.15 3.93 6.17 -2.91 -0.02 3.91 16 36 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 37 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 38 H 0.12 5.27 5.64 -2.91 -0.02 5.26 16 39 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -69.11 326.52 3.81 -65.30 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.30 Total: 32.98 kcal Atomic # 6 Polarization: -57.34 SS G_CDS: 4.50 Total: -52.84 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -2.83 Total: -76.88 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.19 Total: -13.51 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -69.11 3.81 -65.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231758953.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.979 kcal (2) G-P(sol) polarization free energy of solvation -69.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds