Wall clock time and date at job start Mon Mar 30 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 110.99740 * 2 1 4 4 H 1.08999 * 109.47510 * 325.00292 * 3 2 1 5 5 C 1.53002 * 109.47129 * 85.00312 * 3 2 1 6 6 C 1.50700 * 109.46869 * 204.99897 * 3 2 1 7 7 C 1.50697 * 120.00404 * 305.00232 * 6 3 2 8 8 C 1.32649 * 119.99708 * 125.00431 * 6 3 2 9 9 C 1.47726 * 120.00019 * 187.31006 * 8 6 3 10 10 C 1.39639 * 120.07582 * 220.82928 * 9 8 6 11 11 C 1.37777 * 119.92817 * 179.74201 * 10 9 8 12 12 C 1.39034 * 120.07392 * 0.53409 * 11 10 9 13 13 O 1.35683 * 119.92869 * 179.69931 * 12 11 10 14 14 C 1.34812 * 116.99683 * 174.38301 * 13 12 11 15 15 H 1.07997 * 120.00079 * 5.10831 * 14 13 12 16 16 C 1.38641 * 119.99675 * 185.10648 * 14 13 12 17 17 N 1.31559 * 119.99932 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00055 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47262 * 90.00186 * 18 16 14 20 20 H 1.48504 * 109.47462 * 210.00015 * 18 16 14 21 21 H 1.48498 * 109.47439 * 330.00142 * 18 16 14 22 22 C 1.39037 * 120.14073 * 359.71648 * 12 11 10 23 23 C 1.37774 * 120.07709 * 0.02643 * 22 12 11 24 24 H 1.08999 * 109.46650 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46712 * 299.99429 * 1 2 3 26 26 H 1.08994 * 109.46912 * 59.99741 * 1 2 3 27 27 H 1.00906 * 110.99678 * 236.05098 * 2 1 3 28 28 H 1.08999 * 109.46940 * 59.99631 * 5 3 2 29 29 H 1.08999 * 109.47402 * 179.97438 * 5 3 2 30 30 H 1.08994 * 109.47018 * 299.99972 * 5 3 2 31 31 H 1.09005 * 109.47340 * 92.46421 * 7 6 3 32 32 H 1.08999 * 109.47197 * 212.46830 * 7 6 3 33 33 H 1.09003 * 109.46995 * 332.46926 * 7 6 3 34 34 H 1.08000 * 120.00362 * 7.31144 * 8 6 3 35 35 H 1.08003 * 120.03614 * 359.97438 * 10 9 8 36 36 H 1.07998 * 119.96269 * 180.27440 * 11 10 9 37 37 H 0.97001 * 119.99996 * 180.02562 * 17 16 14 38 38 H 1.08004 * 119.95993 * 180.02562 * 22 12 11 39 39 H 1.07997 * 120.03966 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3397 2.0124 -0.5894 5 6 2.0609 1.8926 1.4370 6 6 3.3776 1.3789 -0.6004 7 6 4.4488 0.4809 -0.0373 8 6 3.6514 2.1761 -1.6247 9 6 4.9522 2.0694 -2.3166 10 6 5.6292 3.2236 -2.7160 11 6 6.8448 3.1207 -3.3563 12 6 7.3923 1.8691 -3.6149 13 8 8.5867 1.7711 -4.2512 14 6 9.1182 0.5377 -4.3684 15 1 8.5584 -0.3251 -4.0389 16 6 10.3835 0.3770 -4.9119 17 7 10.9020 -0.8266 -5.0267 18 14 11.3514 1.8693 -5.4824 19 1 12.1714 2.3870 -4.3579 20 1 12.2411 1.4821 -6.6066 21 1 10.4111 2.9252 -5.9365 22 6 6.7183 0.7178 -3.2233 23 6 5.5049 0.8139 -2.5778 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8306 -0.5261 -0.7815 28 1 2.7166 1.2517 2.0264 29 1 2.4519 2.9101 1.4371 30 1 1.0612 1.8871 1.8713 31 1 4.4564 -0.4624 -0.5836 32 1 5.4195 0.9664 -0.1371 33 1 4.2451 0.2889 1.0162 34 1 2.9234 2.9032 -1.9528 35 1 5.2022 4.1960 -2.5198 36 1 7.3709 4.0131 -3.6615 37 1 11.7874 -0.9390 -5.4066 38 1 7.1465 -0.2529 -3.4253 39 1 4.9818 -0.0808 -2.2742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231763088.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:28 Heat of formation + Delta-G solvation = 8.137552 kcal Electronic energy + Delta-G solvation = -18830.753913 eV Core-core repulsion = 15932.170634 eV Total energy + Delta-G solvation = -2898.583279 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.33481 -38.11818 -36.65625 -33.86130 -32.40058 -30.49905 -30.29437 -28.56705 -26.83594 -25.66917 -25.03238 -22.29465 -21.94649 -20.45227 -18.31370 -17.92460 -17.21681 -16.10088 -15.50376 -14.97427 -14.61655 -14.43861 -14.00589 -13.82259 -13.74333 -13.37873 -13.06624 -12.84454 -12.44697 -12.39618 -12.26610 -12.14802 -11.94046 -11.65227 -11.39819 -11.30680 -11.15549 -10.86759 -10.68555 -10.41142 -10.17246 -9.44525 -9.05922 -8.69541 -8.60758 -8.29886 -7.13317 -6.46698 -4.12317 1.64727 2.12823 2.74508 3.19484 3.23151 3.37297 4.15445 4.19655 4.48216 4.71721 4.82042 5.00214 5.06274 5.16936 5.24827 5.37888 5.40404 5.50470 5.58094 5.64469 5.68848 5.70682 5.80111 5.94888 5.98060 6.11552 6.18439 6.22648 6.33581 6.53112 6.68582 6.73036 6.79833 6.99546 7.08280 7.21857 7.27484 7.33244 7.56772 7.76003 7.98893 8.88183 9.50259 10.60599 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041320 B = 0.003733 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.469927 B = 7498.371703 C = 7861.579866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.687 5.687 3 C 0.126 3.874 4 H 0.044 0.956 5 C -0.136 4.136 6 C -0.151 4.151 7 C -0.105 4.105 8 C -0.084 4.084 9 C -0.155 4.155 10 C -0.062 4.062 11 C -0.195 4.195 12 C 0.163 3.837 13 O -0.214 6.214 14 C -0.390 4.390 15 H 0.108 0.892 16 C 0.064 3.936 17 N -0.877 5.877 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.225 4.225 23 C -0.055 4.055 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.020 0.980 27 H 0.345 0.655 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.280 0.720 38 H 0.134 0.866 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.023 4.445 8.417 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.318 5.318 3 C 0.017 3.983 4 H 0.062 0.938 5 C -0.194 4.194 6 C -0.151 4.151 7 C -0.162 4.162 8 C -0.103 4.103 9 C -0.156 4.156 10 C -0.080 4.080 11 C -0.215 4.215 12 C 0.111 3.889 13 O -0.118 6.118 14 C -0.465 4.465 15 H 0.125 0.875 16 C -0.140 4.140 17 N -0.514 5.514 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.245 4.245 23 C -0.073 4.073 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.038 0.962 27 H 0.163 0.837 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.090 0.910 38 H 0.151 0.849 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.622 4.391 8.918 18.517 hybrid contribution 0.257 0.670 -1.228 1.422 sum -15.366 5.061 7.691 17.913 Atomic orbital electron populations 1.22234 0.88182 1.01679 1.00168 1.60491 1.07224 1.13881 1.50172 1.20452 0.92311 0.89183 0.96402 0.93842 1.21774 1.01442 1.00485 0.95712 1.21885 0.95273 1.00742 0.97215 1.20808 0.96928 0.98365 1.00070 1.21433 0.95537 0.98313 0.95006 1.18470 0.96499 0.93200 1.07411 1.20723 0.93788 0.97071 0.96449 1.20136 0.98221 0.95275 1.07825 1.19236 0.86092 0.93392 0.90205 1.83547 1.30050 1.32910 1.65316 1.20794 1.01104 0.81911 1.42736 0.87501 1.24481 0.95727 0.97726 0.96040 1.69645 1.17535 1.21157 1.43057 0.86176 0.79729 0.82304 0.78681 1.19812 1.20724 1.18336 1.21226 0.97329 0.99227 1.06669 1.21038 0.94250 0.96222 0.95829 0.91544 0.91868 0.96160 0.83710 0.91758 0.92528 0.93171 0.91918 0.91377 0.92364 0.87714 0.86858 0.86497 0.90955 0.84858 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.50 60.07 0.63 0.86 16 2 N -0.69 -7.04 6.49 -115.24 -0.75 -7.79 16 3 C 0.13 1.35 2.82 -68.86 -0.19 1.16 16 4 H 0.04 0.47 7.49 -51.93 -0.39 0.08 16 5 C -0.14 -1.37 9.29 37.16 0.35 -1.02 16 6 C -0.15 -1.88 4.63 -101.25 -0.47 -2.35 16 7 C -0.11 -1.37 8.07 36.00 0.29 -1.08 16 8 C -0.08 -1.15 9.36 -37.60 -0.35 -1.50 16 9 C -0.15 -2.57 4.99 -104.97 -0.52 -3.09 16 10 C -0.06 -1.05 9.78 -39.23 -0.38 -1.43 16 11 C -0.20 -3.83 9.97 -39.45 -0.39 -4.23 16 12 C 0.16 3.73 6.65 -38.99 -0.26 3.47 16 13 O -0.21 -5.58 8.58 0.31 0.00 -5.58 16 14 C -0.39 -10.87 9.94 30.88 0.31 -10.57 16 15 H 0.11 3.04 5.42 -52.49 -0.28 2.75 16 16 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 17 N -0.88 -25.06 13.96 55.48 0.77 -24.29 16 18 Si 0.91 21.44 28.62 -169.99 -4.86 16.58 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 22 C -0.23 -4.79 9.15 -39.45 -0.36 -5.15 16 23 C -0.06 -0.99 7.85 -39.23 -0.31 -1.29 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.51 7.44 -51.93 -0.39 0.12 16 26 H 0.02 0.16 8.05 -51.93 -0.42 -0.25 16 27 H 0.34 3.53 8.43 -39.29 -0.33 3.20 16 28 H 0.06 0.68 7.02 -51.93 -0.36 0.32 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.45 7.45 -51.93 -0.39 0.07 16 31 H 0.06 0.80 6.69 -51.93 -0.35 0.45 16 32 H 0.07 1.01 6.68 -51.93 -0.35 0.66 16 33 H 0.06 0.71 6.92 -51.93 -0.36 0.35 16 34 H 0.10 1.29 7.90 -52.49 -0.41 0.87 16 35 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.13 2.98 5.62 -52.48 -0.29 2.68 16 39 H 0.11 1.81 5.92 -52.49 -0.31 1.50 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -28.36 319.22 -7.25 -35.61 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.46 Total: 5.21 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -1.77 Total: -24.55 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.03 Total: -32.08 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: 0.00 Total: -5.58 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.86 Total: 16.58 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.36 -7.25 -35.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231763088.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.747 kcal (2) G-P(sol) polarization free energy of solvation -28.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds