Wall clock time and date at job start Mon Mar 30 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 110.99740 * 2 1 4 4 H 1.08999 * 109.47510 * 325.00292 * 3 2 1 5 5 C 1.53002 * 109.47129 * 85.00312 * 3 2 1 6 6 C 1.50700 * 109.46869 * 204.99897 * 3 2 1 7 7 C 1.50697 * 120.00404 * 305.00232 * 6 3 2 8 8 C 1.32649 * 119.99708 * 125.00431 * 6 3 2 9 9 C 1.47726 * 120.00019 * 187.31006 * 8 6 3 10 10 C 1.39639 * 120.07582 * 220.82928 * 9 8 6 11 11 C 1.37777 * 119.92817 * 179.74201 * 10 9 8 12 12 C 1.39034 * 120.07392 * 0.53409 * 11 10 9 13 13 O 1.35683 * 119.92869 * 179.69931 * 12 11 10 14 14 C 1.34812 * 116.99683 * 174.38301 * 13 12 11 15 15 H 1.07997 * 120.00079 * 5.10831 * 14 13 12 16 16 C 1.38641 * 119.99675 * 185.10648 * 14 13 12 17 17 N 1.31559 * 119.99932 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00055 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47262 * 90.00186 * 18 16 14 20 20 H 1.48504 * 109.47462 * 210.00015 * 18 16 14 21 21 H 1.48498 * 109.47439 * 330.00142 * 18 16 14 22 22 C 1.39037 * 120.14073 * 359.71648 * 12 11 10 23 23 C 1.37774 * 120.07709 * 0.02643 * 22 12 11 24 24 H 1.08999 * 109.46650 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46712 * 299.99429 * 1 2 3 26 26 H 1.08994 * 109.46912 * 59.99741 * 1 2 3 27 27 H 1.00906 * 110.99678 * 236.05098 * 2 1 3 28 28 H 1.08999 * 109.46940 * 59.99631 * 5 3 2 29 29 H 1.08999 * 109.47402 * 179.97438 * 5 3 2 30 30 H 1.08994 * 109.47018 * 299.99972 * 5 3 2 31 31 H 1.09005 * 109.47340 * 92.46421 * 7 6 3 32 32 H 1.08999 * 109.47197 * 212.46830 * 7 6 3 33 33 H 1.09003 * 109.46995 * 332.46926 * 7 6 3 34 34 H 1.08000 * 120.00362 * 7.31144 * 8 6 3 35 35 H 1.08003 * 120.03614 * 359.97438 * 10 9 8 36 36 H 1.07998 * 119.96269 * 180.27440 * 11 10 9 37 37 H 0.97001 * 119.99996 * 180.02562 * 17 16 14 38 38 H 1.08004 * 119.95993 * 180.02562 * 22 12 11 39 39 H 1.07997 * 120.03966 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3397 2.0124 -0.5894 5 6 2.0609 1.8926 1.4370 6 6 3.3776 1.3789 -0.6004 7 6 4.4488 0.4809 -0.0373 8 6 3.6514 2.1761 -1.6247 9 6 4.9522 2.0694 -2.3166 10 6 5.6292 3.2236 -2.7160 11 6 6.8448 3.1207 -3.3563 12 6 7.3923 1.8691 -3.6149 13 8 8.5867 1.7711 -4.2512 14 6 9.1182 0.5377 -4.3684 15 1 8.5584 -0.3251 -4.0389 16 6 10.3835 0.3770 -4.9119 17 7 10.9020 -0.8266 -5.0267 18 14 11.3514 1.8693 -5.4824 19 1 12.1714 2.3870 -4.3579 20 1 12.2411 1.4821 -6.6066 21 1 10.4111 2.9252 -5.9365 22 6 6.7183 0.7178 -3.2233 23 6 5.5049 0.8139 -2.5778 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8306 -0.5261 -0.7815 28 1 2.7166 1.2517 2.0264 29 1 2.4519 2.9101 1.4371 30 1 1.0612 1.8871 1.8713 31 1 4.4564 -0.4624 -0.5836 32 1 5.4195 0.9664 -0.1371 33 1 4.2451 0.2889 1.0162 34 1 2.9234 2.9032 -1.9528 35 1 5.2022 4.1960 -2.5198 36 1 7.3709 4.0131 -3.6615 37 1 11.7874 -0.9390 -5.4066 38 1 7.1465 -0.2529 -3.4253 39 1 4.9818 -0.0808 -2.2742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231763088.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:28 Heat of formation + Delta-G solvation = -8.833923 kcal Electronic energy + Delta-G solvation = -18831.489851 eV Core-core repulsion = 15932.170634 eV Total energy + Delta-G solvation = -2899.319217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94905 -39.33525 -38.01813 -35.03397 -34.35360 -31.90640 -31.49280 -29.77922 -28.12319 -27.11745 -26.18929 -23.63393 -23.40268 -21.71425 -19.81391 -19.47750 -18.91004 -17.06528 -16.65942 -16.58424 -15.85197 -15.77512 -15.62997 -15.39063 -15.10907 -14.51269 -14.26044 -14.16803 -14.03364 -13.92977 -13.35560 -13.15146 -13.02928 -12.91701 -12.62699 -12.53044 -12.44863 -12.35172 -12.11790 -11.94364 -11.45832 -11.30319 -10.93550 -10.06748 -9.82558 -9.38028 -8.67275 -8.51292 -6.23280 0.28430 0.57740 1.31131 1.32682 1.47215 1.52332 2.27246 2.78430 3.05581 3.16656 3.36566 3.72119 4.03627 4.08141 4.16784 4.31757 4.41239 4.47890 4.55037 4.59264 4.68038 4.69725 4.84989 4.88222 4.93331 4.96594 5.01353 5.09621 5.19334 5.26441 5.32904 5.40516 5.52389 5.61399 5.75569 5.78085 5.87132 5.95759 6.16757 6.24726 6.45694 6.82830 7.56770 8.60167 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041320 B = 0.003733 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.469927 B = 7498.371703 C = 7861.579866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.695 5.695 3 C 0.127 3.873 4 H 0.053 0.947 5 C -0.135 4.135 6 C -0.124 4.124 7 C -0.108 4.108 8 C -0.103 4.103 9 C -0.128 4.128 10 C -0.059 4.059 11 C -0.193 4.193 12 C 0.122 3.878 13 O -0.243 6.243 14 C -0.401 4.401 15 H 0.081 0.919 16 C 0.011 3.989 17 N -0.922 5.922 18 Si 0.971 3.029 19 H -0.265 1.265 20 H -0.267 1.267 21 H -0.262 1.262 22 C -0.239 4.239 23 C -0.058 4.058 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.024 0.976 27 H 0.344 0.656 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.132 0.868 35 H 0.155 0.845 36 H 0.130 0.870 37 H 0.285 0.715 38 H 0.108 0.892 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.769 6.520 9.704 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.327 5.327 3 C 0.018 3.982 4 H 0.071 0.929 5 C -0.193 4.193 6 C -0.125 4.125 7 C -0.165 4.165 8 C -0.122 4.122 9 C -0.128 4.128 10 C -0.076 4.076 11 C -0.212 4.212 12 C 0.073 3.927 13 O -0.150 6.150 14 C -0.477 4.477 15 H 0.099 0.901 16 C -0.188 4.188 17 N -0.563 5.563 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.192 1.192 21 H -0.187 1.187 22 C -0.258 4.258 23 C -0.076 4.076 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.162 0.838 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.149 0.851 35 H 0.173 0.827 36 H 0.148 0.852 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.420 6.477 10.231 22.044 hybrid contribution 0.693 0.028 -1.358 1.524 sum -17.728 6.505 8.873 20.864 Atomic orbital electron populations 1.22281 0.86894 1.02467 1.00583 1.60519 1.08483 1.13401 1.50249 1.20477 0.91035 0.89862 0.96855 0.92912 1.21766 1.02040 1.00470 0.95011 1.22067 0.95899 0.98468 0.96050 1.20815 0.96186 0.98464 1.01017 1.21454 0.94558 1.00277 0.95901 1.18897 0.96996 0.92362 1.04575 1.21199 0.92479 0.99098 0.94867 1.20462 0.99073 0.94363 1.07307 1.19774 0.85836 0.95223 0.91890 1.83493 1.31914 1.31399 1.68193 1.20719 1.01512 0.82331 1.43124 0.90114 1.25287 0.96599 1.00578 0.96334 1.69730 1.18372 1.22973 1.45201 0.85212 0.78227 0.78565 0.78684 1.19040 1.19176 1.18665 1.21217 0.98812 0.97994 1.07802 1.21241 0.93121 0.98045 0.95201 0.90694 0.91372 0.95736 0.83823 0.92570 0.92079 0.92036 0.91666 0.93336 0.91295 0.85077 0.82705 0.85190 0.90524 0.87368 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.50 127.69 1.34 1.71 16 2 N -0.70 -12.01 6.49 -518.52 -3.37 -15.38 16 3 C 0.13 2.25 2.82 44.17 0.12 2.37 16 4 H 0.05 0.88 7.49 -2.39 -0.02 0.86 16 5 C -0.14 -2.23 9.29 71.98 0.67 -1.56 16 6 C -0.12 -2.67 4.63 -17.62 -0.08 -2.75 16 7 C -0.11 -2.58 8.07 71.23 0.57 -2.00 16 8 C -0.10 -2.40 9.36 23.61 0.22 -2.18 16 9 C -0.13 -3.88 4.99 -20.09 -0.10 -3.98 16 10 C -0.06 -1.80 9.78 22.50 0.22 -1.58 16 11 C -0.19 -7.36 9.97 22.35 0.22 -7.13 16 12 C 0.12 5.73 6.65 22.65 0.15 5.88 16 13 O -0.24 -13.25 8.58 -21.82 -0.19 -13.43 16 14 C -0.40 -23.74 9.94 67.92 0.68 -23.06 16 15 H 0.08 5.02 5.42 -2.91 -0.02 5.00 16 16 C 0.01 0.61 5.49 84.83 0.47 1.08 16 17 N -0.92 -55.24 13.96 21.61 0.30 -54.94 16 18 Si 0.97 45.48 28.62 68.60 1.96 47.44 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 22 C -0.24 -10.58 9.15 22.35 0.20 -10.38 16 23 C -0.06 -2.04 7.85 22.50 0.18 -1.86 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 0.86 7.44 -2.39 -0.02 0.84 16 26 H 0.02 0.32 8.05 -2.39 -0.02 0.30 16 27 H 0.34 6.03 8.43 -89.69 -0.76 5.28 16 28 H 0.06 1.02 7.02 -2.39 -0.02 1.01 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.89 7.45 -2.39 -0.02 0.87 16 31 H 0.06 1.54 6.69 -2.38 -0.02 1.53 16 32 H 0.05 1.36 6.68 -2.39 -0.02 1.34 16 33 H 0.07 1.51 6.92 -2.39 -0.02 1.49 16 34 H 0.13 2.51 7.90 -2.91 -0.02 2.48 16 35 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 36 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 37 H 0.29 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.11 5.28 5.62 -2.91 -0.02 5.26 16 39 H 0.13 4.09 5.92 -2.91 -0.02 4.07 16 Total: -1.00 -64.35 319.22 3.87 -60.48 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.30 Total: 21.28 kcal Atomic # 6 Polarization: -50.31 SS G_CDS: 4.86 Total: -45.45 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -3.06 Total: -70.32 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.19 Total: -13.43 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.96 Total: 47.44 kcal Total: -64.35 3.87 -60.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231763088.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.641 kcal (2) G-P(sol) polarization free energy of solvation -64.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds