Wall clock time and date at job start Mon Mar 30 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 111.00194 * 2 1 4 4 H 1.09009 * 109.47115 * 34.99880 * 3 2 1 5 5 C 1.53002 * 109.47242 * 275.00025 * 3 2 1 6 6 C 1.50694 * 109.47394 * 154.99659 * 3 2 1 7 7 C 1.50693 * 119.99912 * 55.00381 * 6 3 2 8 8 C 1.32650 * 120.00361 * 234.99964 * 6 3 2 9 9 C 1.47721 * 120.00559 * 187.55804 * 8 6 3 10 10 C 1.39636 * 120.07551 * 213.80665 * 9 8 6 11 11 C 1.37777 * 119.92675 * 179.74247 * 10 9 8 12 12 C 1.39035 * 120.07350 * 0.52532 * 11 10 9 13 13 O 1.35678 * 119.92887 * 179.69981 * 12 11 10 14 14 C 1.34818 * 117.00111 * 174.16732 * 13 12 11 15 15 H 1.07997 * 119.99813 * 5.08035 * 14 13 12 16 16 C 1.38641 * 120.00225 * 185.08649 * 14 13 12 17 17 N 1.31563 * 119.99768 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00105 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47033 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46737 * 120.00211 * 18 16 14 21 21 H 1.48497 * 109.47371 * 239.99884 * 18 16 14 22 22 C 1.39033 * 120.14519 * 359.72765 * 12 11 10 23 23 C 1.37783 * 120.07079 * 0.02562 * 22 12 11 24 24 H 1.08997 * 109.46978 * 300.00194 * 1 2 3 25 25 H 1.08997 * 109.46740 * 59.99937 * 1 2 3 26 26 H 1.08998 * 109.46840 * 179.97438 * 1 2 3 27 27 H 1.00904 * 110.99761 * 123.95213 * 2 1 3 28 28 H 1.08999 * 109.47023 * 179.97438 * 5 3 2 29 29 H 1.08995 * 109.46979 * 299.99841 * 5 3 2 30 30 H 1.08998 * 109.46944 * 59.99699 * 5 3 2 31 31 H 1.09002 * 109.47894 * 86.20493 * 7 6 3 32 32 H 1.09003 * 109.47246 * 206.20286 * 7 6 3 33 33 H 1.09004 * 109.47263 * 326.20210 * 7 6 3 34 34 H 1.08003 * 119.99596 * 7.55631 * 8 6 3 35 35 H 1.07998 * 120.03592 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.96827 * 180.27776 * 11 10 9 37 37 H 0.97005 * 119.99725 * 179.97438 * 17 16 14 38 38 H 1.07995 * 119.96852 * 179.97438 * 22 12 11 39 39 H 1.08006 * 120.03516 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0124 0.5895 5 6 2.0609 1.8926 -1.4370 6 6 3.3776 1.3789 0.6005 7 6 4.4487 0.4809 0.0373 8 6 3.6515 2.1761 1.6248 9 6 5.0416 2.3089 2.1064 10 6 5.2957 2.5046 3.4655 11 6 6.5937 2.6227 3.9121 12 6 7.6495 2.5583 3.0098 13 8 8.9263 2.6812 3.4520 14 6 9.9082 2.4895 2.5482 15 1 9.6619 2.3313 1.5087 16 6 11.2341 2.4954 2.9533 17 7 11.5341 2.6875 4.2198 18 14 12.5945 2.2292 1.7012 19 1 11.9976 2.0372 0.3551 20 1 13.4880 3.4152 1.6815 21 1 13.3794 1.0242 2.0716 22 6 7.3998 2.3689 1.6552 23 6 6.1043 2.2449 1.2028 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8306 -0.5261 0.7814 28 1 2.4512 2.9104 -1.4369 29 1 2.7166 1.2518 -2.0264 30 1 1.0612 1.8872 -1.8713 31 1 4.9419 0.9817 -0.7958 32 1 5.1817 0.2589 0.8130 33 1 3.9975 -0.4476 -0.3126 34 1 2.8580 2.7281 2.1066 35 1 4.4757 2.5594 4.1663 36 1 6.7911 2.7696 4.9637 37 1 12.4618 2.6912 4.5033 38 1 8.2221 2.3197 0.9568 39 1 5.9110 2.0982 0.1503 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231763090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:30 Heat of formation + Delta-G solvation = 9.191147 kcal Electronic energy + Delta-G solvation = -18809.950046 eV Core-core repulsion = 15911.412454 eV Total energy + Delta-G solvation = -2898.537592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.22364 -38.03694 -36.53685 -33.82344 -32.27434 -30.40198 -30.22479 -28.43285 -26.75143 -25.66173 -25.14128 -22.25991 -21.83956 -20.46424 -18.30201 -18.01149 -16.91267 -16.06293 -15.45497 -14.71560 -14.60075 -14.39493 -14.34486 -13.69188 -13.62873 -13.32666 -12.97594 -12.81872 -12.53711 -12.31746 -12.12880 -11.90808 -11.76456 -11.56331 -11.34621 -11.28088 -11.15341 -10.91133 -10.63140 -10.45330 -10.24687 -9.37952 -9.08701 -8.67792 -8.54119 -8.19459 -6.97314 -6.50503 -4.07683 1.70172 2.23073 2.86820 3.11202 3.12714 3.17214 3.92965 4.16294 4.59036 4.77201 5.03596 5.05837 5.18403 5.23744 5.26113 5.41080 5.44504 5.57649 5.63359 5.66896 5.73126 5.77387 5.83968 5.98252 6.04748 6.19296 6.22198 6.29311 6.37149 6.65211 6.74912 6.80057 6.90823 6.99841 7.11832 7.22913 7.31089 7.38929 7.45397 7.79620 7.95132 8.95202 9.64783 10.67252 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.036440 B = 0.003734 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.211242 B = 7496.902867 C = 7991.536346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.689 5.689 3 C 0.128 3.872 4 H 0.043 0.957 5 C -0.135 4.135 6 C -0.160 4.160 7 C -0.110 4.110 8 C -0.077 4.077 9 C -0.166 4.166 10 C -0.059 4.059 11 C -0.196 4.196 12 C 0.159 3.841 13 O -0.174 6.174 14 C -0.391 4.391 15 H 0.094 0.906 16 C 0.039 3.961 17 N -0.860 5.860 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.240 4.240 23 C -0.055 4.055 24 H 0.019 0.981 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.345 0.655 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.270 0.730 38 H 0.128 0.872 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.105 -2.980 -7.592 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.320 5.320 3 C 0.019 3.981 4 H 0.061 0.939 5 C -0.192 4.192 6 C -0.161 4.161 7 C -0.166 4.166 8 C -0.096 4.096 9 C -0.167 4.167 10 C -0.077 4.077 11 C -0.216 4.216 12 C 0.104 3.896 13 O -0.077 6.077 14 C -0.467 4.467 15 H 0.112 0.888 16 C -0.165 4.165 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.259 4.259 23 C -0.073 4.073 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.163 0.837 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.080 0.920 38 H 0.145 0.855 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.732 -2.985 -7.912 17.861 hybrid contribution 0.432 0.230 0.336 0.593 sum -15.301 -2.755 -7.577 17.295 Atomic orbital electron populations 1.22228 0.88304 1.01584 1.00158 1.60505 1.07166 1.14169 1.50158 1.20455 0.92352 0.88987 0.96338 0.93926 1.21741 1.01424 1.00518 0.95564 1.21802 0.95460 1.00148 0.98649 1.20944 0.96970 0.97977 1.00737 1.21441 0.94662 0.97616 0.95891 1.18412 0.91958 1.12895 0.93400 1.20722 0.95202 0.97456 0.94365 1.20140 0.90908 1.11620 0.98884 1.19498 0.86171 0.91844 0.92060 1.83949 1.10146 1.75531 1.38049 1.21419 0.84269 1.50848 0.90182 0.88845 1.25321 0.97505 0.96494 0.97226 1.70054 1.19468 1.45095 1.14841 0.85629 0.79898 0.78362 0.79460 1.19003 1.20095 1.20063 1.21117 0.97113 1.11916 0.95793 1.21160 0.91638 0.95906 0.98627 0.96204 0.91887 0.91634 0.83712 0.92483 0.91823 0.93160 0.92216 0.90974 0.92059 0.87878 0.87078 0.86495 0.91968 0.85477 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.50 60.07 0.63 0.86 16 2 N -0.69 -7.13 6.15 -115.25 -0.71 -7.84 16 3 C 0.13 1.42 2.83 -68.87 -0.19 1.22 16 4 H 0.04 0.47 7.48 -51.92 -0.39 0.08 16 5 C -0.13 -1.41 9.30 37.16 0.35 -1.06 16 6 C -0.16 -2.06 4.65 -101.25 -0.47 -2.54 16 7 C -0.11 -1.45 7.79 36.00 0.28 -1.17 16 8 C -0.08 -1.10 9.41 -37.60 -0.35 -1.46 16 9 C -0.17 -2.88 5.20 -104.98 -0.55 -3.42 16 10 C -0.06 -1.06 9.78 -39.23 -0.38 -1.45 16 11 C -0.20 -4.14 9.97 -39.45 -0.39 -4.54 16 12 C 0.16 3.82 6.65 -38.99 -0.26 3.56 16 13 O -0.17 -4.94 9.75 0.31 0.00 -4.93 16 14 C -0.39 -10.83 9.48 30.88 0.29 -10.54 16 15 H 0.09 2.40 5.19 -52.49 -0.27 2.12 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.02 13.67 55.48 0.76 -24.26 16 18 Si 0.94 20.31 29.55 -169.99 -5.02 15.29 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 22 C -0.24 -5.19 9.15 -39.45 -0.36 -5.55 16 23 C -0.06 -1.02 7.58 -39.22 -0.30 -1.31 16 24 H 0.02 0.16 8.05 -51.93 -0.42 -0.26 16 25 H 0.06 0.51 7.44 -51.93 -0.39 0.13 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.34 3.54 8.43 -39.29 -0.33 3.21 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 30 H 0.05 0.47 7.45 -51.93 -0.39 0.09 16 31 H 0.06 0.77 6.89 -51.93 -0.36 0.41 16 32 H 0.07 1.09 5.98 -51.93 -0.31 0.78 16 33 H 0.06 0.75 7.66 -51.93 -0.40 0.35 16 34 H 0.10 1.33 7.87 -52.48 -0.41 0.92 16 35 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 37 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.13 2.75 5.62 -52.49 -0.30 2.46 16 39 H 0.12 1.89 5.37 -52.48 -0.28 1.61 16 LS Contribution 320.27 15.07 4.83 4.83 Total: -1.00 -29.38 320.27 -7.43 -36.81 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.48 Total: 6.54 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -1.81 Total: -26.43 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.05 Total: -32.10 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: 0.00 Total: -4.93 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.38 -7.43 -36.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231763090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.999 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds