Wall clock time and date at job start Mon Mar 30 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 111.00194 * 2 1 4 4 H 1.09009 * 109.47115 * 34.99880 * 3 2 1 5 5 C 1.53002 * 109.47242 * 275.00025 * 3 2 1 6 6 C 1.50694 * 109.47394 * 154.99659 * 3 2 1 7 7 C 1.50693 * 119.99912 * 55.00381 * 6 3 2 8 8 C 1.32650 * 120.00361 * 234.99964 * 6 3 2 9 9 C 1.47721 * 120.00559 * 187.55804 * 8 6 3 10 10 C 1.39636 * 120.07551 * 213.80665 * 9 8 6 11 11 C 1.37777 * 119.92675 * 179.74247 * 10 9 8 12 12 C 1.39035 * 120.07350 * 0.52532 * 11 10 9 13 13 O 1.35678 * 119.92887 * 179.69981 * 12 11 10 14 14 C 1.34818 * 117.00111 * 174.16732 * 13 12 11 15 15 H 1.07997 * 119.99813 * 5.08035 * 14 13 12 16 16 C 1.38641 * 120.00225 * 185.08649 * 14 13 12 17 17 N 1.31563 * 119.99768 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00105 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47033 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46737 * 120.00211 * 18 16 14 21 21 H 1.48497 * 109.47371 * 239.99884 * 18 16 14 22 22 C 1.39033 * 120.14519 * 359.72765 * 12 11 10 23 23 C 1.37783 * 120.07079 * 0.02562 * 22 12 11 24 24 H 1.08997 * 109.46978 * 300.00194 * 1 2 3 25 25 H 1.08997 * 109.46740 * 59.99937 * 1 2 3 26 26 H 1.08998 * 109.46840 * 179.97438 * 1 2 3 27 27 H 1.00904 * 110.99761 * 123.95213 * 2 1 3 28 28 H 1.08999 * 109.47023 * 179.97438 * 5 3 2 29 29 H 1.08995 * 109.46979 * 299.99841 * 5 3 2 30 30 H 1.08998 * 109.46944 * 59.99699 * 5 3 2 31 31 H 1.09002 * 109.47894 * 86.20493 * 7 6 3 32 32 H 1.09003 * 109.47246 * 206.20286 * 7 6 3 33 33 H 1.09004 * 109.47263 * 326.20210 * 7 6 3 34 34 H 1.08003 * 119.99596 * 7.55631 * 8 6 3 35 35 H 1.07998 * 120.03592 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.96827 * 180.27776 * 11 10 9 37 37 H 0.97005 * 119.99725 * 179.97438 * 17 16 14 38 38 H 1.07995 * 119.96852 * 179.97438 * 22 12 11 39 39 H 1.08006 * 120.03516 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0124 0.5895 5 6 2.0609 1.8926 -1.4370 6 6 3.3776 1.3789 0.6005 7 6 4.4487 0.4809 0.0373 8 6 3.6515 2.1761 1.6248 9 6 5.0416 2.3089 2.1064 10 6 5.2957 2.5046 3.4655 11 6 6.5937 2.6227 3.9121 12 6 7.6495 2.5583 3.0098 13 8 8.9263 2.6812 3.4520 14 6 9.9082 2.4895 2.5482 15 1 9.6619 2.3313 1.5087 16 6 11.2341 2.4954 2.9533 17 7 11.5341 2.6875 4.2198 18 14 12.5945 2.2292 1.7012 19 1 11.9976 2.0372 0.3551 20 1 13.4880 3.4152 1.6815 21 1 13.3794 1.0242 2.0716 22 6 7.3998 2.3689 1.6552 23 6 6.1043 2.2449 1.2028 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8306 -0.5261 0.7814 28 1 2.4512 2.9104 -1.4369 29 1 2.7166 1.2518 -2.0264 30 1 1.0612 1.8872 -1.8713 31 1 4.9419 0.9817 -0.7958 32 1 5.1817 0.2589 0.8130 33 1 3.9975 -0.4476 -0.3126 34 1 2.8580 2.7281 2.1066 35 1 4.4757 2.5594 4.1663 36 1 6.7911 2.7696 4.9637 37 1 12.4618 2.6912 4.5033 38 1 8.2221 2.3197 0.9568 39 1 5.9110 2.0982 0.1503 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231763090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:30 Heat of formation + Delta-G solvation = -8.784699 kcal Electronic energy + Delta-G solvation = -18810.729537 eV Core-core repulsion = 15911.412454 eV Total energy + Delta-G solvation = -2899.317083 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86451 -39.29757 -37.95372 -35.04443 -34.15911 -31.90278 -31.38641 -29.69695 -28.04693 -27.28997 -26.19298 -23.50790 -23.47513 -21.75259 -19.86011 -19.43993 -18.68371 -17.03893 -16.64216 -16.40133 -16.05012 -15.74981 -15.54237 -15.32077 -15.06183 -14.51131 -14.39717 -14.18881 -13.58239 -13.51929 -13.34726 -13.25938 -12.97249 -12.88973 -12.61214 -12.49344 -12.39358 -12.25643 -12.11896 -12.09295 -11.41728 -11.17309 -10.86552 -10.10100 -9.78404 -9.36714 -8.57119 -8.48501 -6.15888 0.29875 0.60793 1.35070 1.38776 1.53423 1.57678 2.16955 2.85445 3.17981 3.37125 3.50313 3.74987 4.03975 4.10685 4.19016 4.33504 4.42848 4.48050 4.57059 4.59501 4.69345 4.71845 4.84501 4.90483 4.96402 5.00066 5.05250 5.09367 5.12159 5.23370 5.31941 5.39251 5.51485 5.59490 5.70288 5.79378 5.97159 6.02007 6.15356 6.24085 6.47647 6.96011 7.76224 8.74468 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.036440 B = 0.003734 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.211242 B = 7496.902867 C = 7991.536346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.696 5.696 3 C 0.128 3.872 4 H 0.051 0.949 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.114 4.114 8 C -0.101 4.101 9 C -0.138 4.138 10 C -0.057 4.057 11 C -0.206 4.206 12 C 0.117 3.883 13 O -0.230 6.230 14 C -0.413 4.413 15 H 0.103 0.897 16 C -0.023 4.023 17 N -0.920 5.920 18 Si 1.019 2.981 19 H -0.251 1.251 20 H -0.268 1.268 21 H -0.268 1.268 22 C -0.246 4.246 23 C -0.057 4.057 24 H 0.024 0.976 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.345 0.655 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.149 0.851 36 H 0.114 0.886 37 H 0.273 0.727 38 H 0.119 0.881 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.136 -3.599 -9.843 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.327 5.327 3 C 0.019 3.981 4 H 0.069 0.931 5 C -0.192 4.192 6 C -0.129 4.129 7 C -0.170 4.170 8 C -0.120 4.120 9 C -0.138 4.138 10 C -0.074 4.074 11 C -0.226 4.226 12 C 0.066 3.934 13 O -0.136 6.136 14 C -0.489 4.489 15 H 0.120 0.880 16 C -0.220 4.220 17 N -0.558 5.558 18 Si 0.838 3.162 19 H -0.174 1.174 20 H -0.193 1.193 21 H -0.193 1.193 22 C -0.265 4.265 23 C -0.074 4.074 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.163 0.837 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.167 0.833 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.137 0.863 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.838 -3.608 -10.185 21.717 hybrid contribution 0.874 0.332 0.918 1.310 sum -17.964 -3.276 -9.267 20.477 Atomic orbital electron populations 1.22279 0.86976 1.02472 1.00535 1.60525 1.08459 1.13463 1.50267 1.20477 0.91062 0.89828 0.96710 0.93143 1.21734 1.02128 1.00377 0.94923 1.22041 0.96350 0.97863 0.96609 1.20967 0.96803 0.98874 1.00394 1.21436 0.93226 0.99963 0.97374 1.18859 0.93554 1.08498 0.92913 1.21129 0.94703 0.96067 0.95545 1.20396 0.91748 1.11738 0.98680 1.20027 0.85661 0.93891 0.93786 1.83918 1.11663 1.78902 1.39146 1.21881 0.84987 1.51316 0.90747 0.88022 1.26602 0.99921 0.95976 0.99510 1.70194 1.20116 1.48155 1.17345 0.84525 0.76122 0.78515 0.77027 1.17408 1.19302 1.19292 1.21199 0.98492 1.12057 0.94775 1.21436 0.90505 0.95284 1.00214 0.95757 0.91509 0.90607 0.83705 0.92354 0.92371 0.91956 0.91418 0.92904 0.90801 0.85490 0.83322 0.86756 0.91783 0.86289 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.50 127.69 1.34 1.69 16 2 N -0.70 -11.75 6.15 -518.53 -3.19 -14.94 16 3 C 0.13 2.31 2.83 44.17 0.13 2.44 16 4 H 0.05 0.88 7.48 -2.38 -0.02 0.86 16 5 C -0.13 -2.28 9.30 71.98 0.67 -1.61 16 6 C -0.13 -2.80 4.65 -17.62 -0.08 -2.88 16 7 C -0.11 -2.64 7.79 71.23 0.55 -2.09 16 8 C -0.10 -2.49 9.41 23.61 0.22 -2.26 16 9 C -0.14 -4.42 5.20 -20.09 -0.10 -4.53 16 10 C -0.06 -1.93 9.78 22.50 0.22 -1.71 16 11 C -0.21 -8.89 9.97 22.35 0.22 -8.67 16 12 C 0.12 5.89 6.65 22.65 0.15 6.04 16 13 O -0.23 -13.96 9.75 -21.82 -0.21 -14.17 16 14 C -0.41 -24.20 9.48 67.92 0.64 -23.56 16 15 H 0.10 5.48 5.19 -2.91 -0.02 5.46 16 16 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 17 N -0.92 -56.66 13.67 21.61 0.30 -56.36 16 18 Si 1.02 42.92 29.55 68.60 2.03 44.95 16 19 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 22 C -0.25 -10.85 9.15 22.35 0.20 -10.65 16 23 C -0.06 -2.00 7.58 22.50 0.17 -1.83 16 24 H 0.02 0.30 8.05 -2.39 -0.02 0.28 16 25 H 0.07 0.84 7.44 -2.39 -0.02 0.82 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.34 5.82 8.43 -89.69 -0.76 5.06 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.06 7.90 -2.39 -0.02 1.04 16 30 H 0.06 0.93 7.45 -2.39 -0.02 0.91 16 31 H 0.07 1.51 6.89 -2.39 -0.02 1.49 16 32 H 0.05 1.46 5.98 -2.39 -0.01 1.45 16 33 H 0.07 1.57 7.66 -2.39 -0.02 1.55 16 34 H 0.13 2.64 7.87 -2.91 -0.02 2.61 16 35 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 37 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 38 H 0.12 5.34 5.62 -2.91 -0.02 5.32 16 39 H 0.14 4.24 5.37 -2.91 -0.02 4.23 16 Total: -1.00 -68.05 320.27 4.03 -64.02 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.30 Total: 26.93 kcal Atomic # 6 Polarization: -55.24 SS G_CDS: 4.80 Total: -50.43 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -2.89 Total: -71.30 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.21 Total: -14.17 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -68.05 4.03 -64.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231763090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.237 kcal (2) G-P(sol) polarization free energy of solvation -68.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds