Wall clock time and date at job start Mon Mar 30 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00259 * 2 1 4 4 H 1.09002 * 109.47260 * 325.00388 * 3 2 1 5 5 C 1.53003 * 109.47057 * 85.00100 * 3 2 1 6 6 C 1.50698 * 109.47562 * 205.00204 * 3 2 1 7 7 C 1.50699 * 119.99890 * 305.00264 * 6 3 2 8 8 C 1.32666 * 119.99967 * 124.99737 * 6 3 2 9 9 C 1.47684 * 119.99785 * 187.22501 * 8 6 3 10 10 C 1.39506 * 120.18206 * 36.09593 * 9 8 6 11 11 C 1.37951 * 119.92233 * 179.97438 * 10 9 8 12 12 C 1.38476 * 120.29407 * 0.02562 * 11 10 9 13 13 C 1.38110 * 120.37367 * 0.02562 * 12 11 10 14 14 C 1.38741 * 120.06860 * 359.67912 * 13 12 11 15 15 O 1.35640 * 120.15036 * 180.31943 * 14 13 12 16 16 C 1.34813 * 117.00073 * 354.18011 * 15 14 13 17 17 H 1.08008 * 119.99830 * 5.08112 * 16 15 14 18 18 C 1.38646 * 120.00122 * 185.07393 * 16 15 14 19 19 N 1.31562 * 120.00047 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99995 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47131 * 89.99694 * 20 18 16 22 22 H 1.48509 * 109.47082 * 209.99986 * 20 18 16 23 23 H 1.48500 * 109.47123 * 329.99887 * 20 18 16 24 24 H 1.08996 * 109.46944 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46929 * 59.99508 * 1 2 3 26 26 H 1.09000 * 109.46499 * 300.00155 * 1 2 3 27 27 H 1.00902 * 111.00298 * 123.95777 * 2 1 3 28 28 H 1.08996 * 109.46951 * 299.99972 * 5 3 2 29 29 H 1.08993 * 109.46741 * 60.00208 * 5 3 2 30 30 H 1.09002 * 109.47093 * 179.97438 * 5 3 2 31 31 H 1.08998 * 109.47171 * 86.04556 * 7 6 3 32 32 H 1.09002 * 109.47244 * 206.04734 * 7 6 3 33 33 H 1.08996 * 109.47078 * 326.04616 * 7 6 3 34 34 H 1.08002 * 120.00315 * 7.22950 * 8 6 3 35 35 H 1.07996 * 120.03602 * 359.97438 * 10 9 8 36 36 H 1.07996 * 119.85196 * 179.97438 * 11 10 9 37 37 H 1.08006 * 119.81391 * 179.97438 * 12 11 10 38 38 H 1.08002 * 119.97158 * 180.02562 * 13 12 11 39 39 H 0.96997 * 119.99745 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 -0.5894 5 6 2.0610 1.8925 1.4370 6 6 3.3777 1.3789 -0.6005 7 6 4.4488 0.4808 -0.0373 8 6 3.6515 2.1762 -1.6249 9 6 4.9527 2.0708 -2.3154 10 6 5.5584 0.8254 -2.4839 11 6 6.7737 0.7330 -3.1302 12 6 7.3965 1.8718 -3.6127 13 6 6.8083 3.1110 -3.4516 14 6 5.5834 3.2208 -2.8094 15 8 5.0012 4.4363 -2.6561 16 6 5.7178 5.5112 -3.0414 17 1 6.6738 5.3775 -3.5258 18 6 5.2274 6.7883 -2.8160 19 7 5.9265 7.8373 -3.1925 20 14 3.5742 7.0196 -1.9778 21 1 3.7717 7.1048 -0.5085 22 1 2.9426 8.2720 -2.4659 23 1 2.6938 5.8659 -2.2928 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 0.5139 0.8900 27 1 1.8307 -0.5262 0.7813 28 1 1.0613 1.8872 1.8713 29 1 2.7166 1.2517 2.0264 30 1 2.4521 2.9100 1.4371 31 1 4.3821 -0.5015 -0.5050 32 1 5.4287 0.9134 -0.2389 33 1 4.3102 0.3809 1.0391 34 1 2.9229 2.9023 -1.9539 35 1 5.0764 -0.0653 -2.1089 36 1 7.2417 -0.2316 -3.2597 37 1 8.3481 1.7906 -4.1171 38 1 7.2997 3.9948 -3.8309 39 1 5.5833 8.7308 -3.0351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231763093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:32 Heat of formation + Delta-G solvation = 11.469267 kcal Electronic energy + Delta-G solvation = -19451.754265 eV Core-core repulsion = 16553.315460 eV Total energy + Delta-G solvation = -2898.438805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.36370 -37.85144 -36.54864 -34.12678 -32.41460 -30.64021 -29.30178 -28.67353 -26.84375 -25.33489 -25.13383 -22.82317 -21.32118 -20.64908 -18.24904 -17.86242 -16.91270 -15.82546 -15.28498 -14.84936 -14.66112 -14.47629 -13.99744 -13.90710 -13.70474 -13.21755 -12.98784 -12.77316 -12.40441 -12.39662 -12.30534 -11.96756 -11.83919 -11.64007 -11.32685 -11.16831 -10.92770 -10.79969 -10.60369 -10.43122 -10.12906 -9.39834 -9.04328 -8.86217 -8.43220 -7.78682 -7.13134 -6.43958 -4.09300 1.72062 2.30689 2.95296 3.19986 3.23749 3.37667 4.21455 4.32840 4.55325 4.83456 4.91878 5.08381 5.09874 5.26120 5.30993 5.38854 5.54009 5.58917 5.63571 5.73101 5.77566 5.80236 5.89913 5.98112 6.06768 6.12515 6.21512 6.23796 6.42894 6.59884 6.79093 6.89194 6.98293 7.11425 7.28632 7.30360 7.33289 7.43277 7.63646 7.79498 8.02764 8.91475 9.54791 10.63657 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.007126 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.300755 B = 3928.567206 C = 5468.849877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.684 5.684 3 C 0.126 3.874 4 H 0.079 0.921 5 C -0.180 4.180 6 C -0.138 4.138 7 C -0.107 4.107 8 C -0.073 4.073 9 C -0.135 4.135 10 C -0.065 4.065 11 C -0.211 4.211 12 C -0.072 4.072 13 C -0.224 4.224 14 C 0.170 3.830 15 O -0.209 6.209 16 C -0.389 4.389 17 H 0.107 0.893 18 C 0.065 3.935 19 N -0.878 5.878 20 Si 0.903 3.097 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.019 0.981 27 H 0.339 0.661 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.212 -13.583 6.553 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.313 5.313 3 C 0.017 3.983 4 H 0.098 0.902 5 C -0.238 4.238 6 C -0.139 4.139 7 C -0.163 4.163 8 C -0.091 4.091 9 C -0.136 4.136 10 C -0.083 4.083 11 C -0.229 4.229 12 C -0.091 4.091 13 C -0.243 4.243 14 C 0.117 3.883 15 O -0.114 6.114 16 C -0.464 4.464 17 H 0.124 0.876 18 C -0.138 4.138 19 N -0.516 5.516 20 Si 0.728 3.272 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.156 0.844 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.128 0.872 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.150 0.850 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.393 -13.322 5.942 15.927 hybrid contribution -0.684 0.734 1.124 1.507 sum -7.078 -12.589 7.066 16.078 Atomic orbital electron populations 1.22211 0.88197 1.01503 1.00300 1.60472 1.07139 1.13932 1.49798 1.20454 0.93857 0.89059 0.94970 0.90237 1.22478 1.01145 1.02781 0.97436 1.21491 0.94465 1.00150 0.97806 1.20902 0.97714 0.98583 0.99141 1.21279 0.95271 0.97770 0.94821 1.18081 0.97136 0.91234 1.07146 1.21058 0.94576 0.95743 0.96888 1.20609 0.97879 0.97684 1.06766 1.20863 0.98424 0.92302 0.97484 1.21229 0.97809 0.98493 1.06817 1.19222 0.91006 0.85550 0.92505 1.83528 1.42094 1.11785 1.73947 1.20785 1.04324 0.82185 1.39154 0.87603 1.24447 0.99174 0.93694 0.96533 1.69646 1.38173 0.98407 1.45374 0.86220 0.83019 0.78128 0.79815 1.19855 1.20796 1.18257 0.91686 0.91722 0.96254 0.84364 0.93118 0.92262 0.91519 0.91844 0.91160 0.93399 0.87179 0.85946 0.87431 0.87325 0.84953 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.50 60.07 0.63 0.90 16 2 N -0.68 -7.90 6.42 -115.25 -0.74 -8.64 16 3 C 0.13 1.67 2.80 -68.87 -0.19 1.48 16 4 H 0.08 1.13 7.49 -51.93 -0.39 0.74 16 5 C -0.18 -2.12 9.04 37.16 0.34 -1.79 16 6 C -0.14 -2.15 5.00 -101.24 -0.51 -2.66 16 7 C -0.11 -1.47 8.01 36.01 0.29 -1.19 16 8 C -0.07 -1.36 8.95 -37.62 -0.34 -1.70 16 9 C -0.13 -2.72 5.15 -104.84 -0.54 -3.26 16 10 C -0.06 -1.13 7.61 -39.21 -0.30 -1.43 16 11 C -0.21 -3.56 10.03 -39.60 -0.40 -3.96 16 12 C -0.07 -1.32 10.03 -39.54 -0.40 -1.72 16 13 C -0.22 -4.88 9.16 -39.44 -0.36 -5.25 16 14 C 0.17 3.96 6.65 -38.67 -0.26 3.70 16 15 O -0.21 -5.49 8.03 0.44 0.00 -5.49 16 16 C -0.39 -10.92 9.95 30.88 0.31 -10.61 16 17 H 0.11 3.04 5.44 -52.48 -0.29 2.75 16 18 C 0.06 1.82 5.49 -17.52 -0.10 1.72 16 19 N -0.88 -25.30 13.96 55.48 0.77 -24.53 16 20 Si 0.90 21.64 28.62 -169.99 -4.86 16.77 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 26 H 0.02 0.17 7.44 -51.93 -0.39 -0.21 16 27 H 0.34 3.41 8.56 -39.29 -0.34 3.08 16 28 H 0.05 0.53 7.45 -51.93 -0.39 0.14 16 29 H 0.06 0.64 7.00 -51.93 -0.36 0.28 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.80 6.95 -51.93 -0.36 0.44 16 32 H 0.07 1.08 6.02 -51.93 -0.31 0.77 16 33 H 0.05 0.57 6.91 -51.93 -0.36 0.22 16 34 H 0.11 2.18 7.89 -52.49 -0.41 1.76 16 35 H 0.12 1.86 5.58 -52.49 -0.29 1.57 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.13 3.01 5.64 -52.49 -0.30 2.71 16 39 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 317.86 15.07 4.79 4.79 Total: -1.00 -28.98 317.86 -7.28 -36.27 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.43 Total: 6.57 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -1.82 Total: -25.75 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.03 Total: -33.16 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: 0.00 Total: -5.49 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.86 Total: 16.77 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.98 -7.28 -36.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231763093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.735 kcal (2) G-P(sol) polarization free energy of solvation -28.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds