Wall clock time and date at job start Mon Mar 30 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00259 * 2 1 4 4 H 1.09002 * 109.47260 * 325.00388 * 3 2 1 5 5 C 1.53003 * 109.47057 * 85.00100 * 3 2 1 6 6 C 1.50698 * 109.47562 * 205.00204 * 3 2 1 7 7 C 1.50699 * 119.99890 * 305.00264 * 6 3 2 8 8 C 1.32666 * 119.99967 * 124.99737 * 6 3 2 9 9 C 1.47684 * 119.99785 * 187.22501 * 8 6 3 10 10 C 1.39506 * 120.18206 * 36.09593 * 9 8 6 11 11 C 1.37951 * 119.92233 * 179.97438 * 10 9 8 12 12 C 1.38476 * 120.29407 * 0.02562 * 11 10 9 13 13 C 1.38110 * 120.37367 * 0.02562 * 12 11 10 14 14 C 1.38741 * 120.06860 * 359.67912 * 13 12 11 15 15 O 1.35640 * 120.15036 * 180.31943 * 14 13 12 16 16 C 1.34813 * 117.00073 * 354.18011 * 15 14 13 17 17 H 1.08008 * 119.99830 * 5.08112 * 16 15 14 18 18 C 1.38646 * 120.00122 * 185.07393 * 16 15 14 19 19 N 1.31562 * 120.00047 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99995 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47131 * 89.99694 * 20 18 16 22 22 H 1.48509 * 109.47082 * 209.99986 * 20 18 16 23 23 H 1.48500 * 109.47123 * 329.99887 * 20 18 16 24 24 H 1.08996 * 109.46944 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46929 * 59.99508 * 1 2 3 26 26 H 1.09000 * 109.46499 * 300.00155 * 1 2 3 27 27 H 1.00902 * 111.00298 * 123.95777 * 2 1 3 28 28 H 1.08996 * 109.46951 * 299.99972 * 5 3 2 29 29 H 1.08993 * 109.46741 * 60.00208 * 5 3 2 30 30 H 1.09002 * 109.47093 * 179.97438 * 5 3 2 31 31 H 1.08998 * 109.47171 * 86.04556 * 7 6 3 32 32 H 1.09002 * 109.47244 * 206.04734 * 7 6 3 33 33 H 1.08996 * 109.47078 * 326.04616 * 7 6 3 34 34 H 1.08002 * 120.00315 * 7.22950 * 8 6 3 35 35 H 1.07996 * 120.03602 * 359.97438 * 10 9 8 36 36 H 1.07996 * 119.85196 * 179.97438 * 11 10 9 37 37 H 1.08006 * 119.81391 * 179.97438 * 12 11 10 38 38 H 1.08002 * 119.97158 * 180.02562 * 13 12 11 39 39 H 0.96997 * 119.99745 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 -0.5894 5 6 2.0610 1.8925 1.4370 6 6 3.3777 1.3789 -0.6005 7 6 4.4488 0.4808 -0.0373 8 6 3.6515 2.1762 -1.6249 9 6 4.9527 2.0708 -2.3154 10 6 5.5584 0.8254 -2.4839 11 6 6.7737 0.7330 -3.1302 12 6 7.3965 1.8718 -3.6127 13 6 6.8083 3.1110 -3.4516 14 6 5.5834 3.2208 -2.8094 15 8 5.0012 4.4363 -2.6561 16 6 5.7178 5.5112 -3.0414 17 1 6.6738 5.3775 -3.5258 18 6 5.2274 6.7883 -2.8160 19 7 5.9265 7.8373 -3.1925 20 14 3.5742 7.0196 -1.9778 21 1 3.7717 7.1048 -0.5085 22 1 2.9426 8.2720 -2.4659 23 1 2.6938 5.8659 -2.2928 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 0.5139 0.8900 27 1 1.8307 -0.5262 0.7813 28 1 1.0613 1.8872 1.8713 29 1 2.7166 1.2517 2.0264 30 1 2.4521 2.9100 1.4371 31 1 4.3821 -0.5015 -0.5050 32 1 5.4287 0.9134 -0.2389 33 1 4.3102 0.3809 1.0391 34 1 2.9229 2.9023 -1.9539 35 1 5.0764 -0.0653 -2.1089 36 1 7.2417 -0.2316 -3.2597 37 1 8.3481 1.7906 -4.1171 38 1 7.2997 3.9948 -3.8309 39 1 5.5833 8.7308 -3.0351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231763093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:31 Heat of formation + Delta-G solvation = -6.478796 kcal Electronic energy + Delta-G solvation = -19452.532552 eV Core-core repulsion = 16553.315460 eV Total energy + Delta-G solvation = -2899.217091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.00080 -39.11770 -38.08208 -35.35606 -34.47384 -31.84093 -30.89639 -29.87820 -28.15284 -27.21081 -26.10737 -24.08071 -22.95436 -22.02620 -19.79522 -19.60517 -18.57438 -17.04519 -16.74315 -16.30798 -15.93365 -15.79918 -15.56787 -15.49223 -15.26059 -14.42595 -14.35210 -14.21318 -14.02229 -13.84840 -13.30519 -13.18152 -13.01319 -12.92959 -12.76581 -12.54000 -12.47399 -12.21144 -12.12487 -11.92688 -11.69325 -11.18780 -10.93169 -10.42286 -9.41191 -9.27190 -8.70066 -8.52406 -6.22665 0.25069 0.71233 1.26127 1.30544 1.46969 1.54921 2.24569 2.78415 3.07193 3.20072 3.37607 3.80744 4.02174 4.16674 4.20660 4.23043 4.35887 4.38214 4.53409 4.61475 4.65863 4.68713 4.73284 4.86553 4.92241 4.97845 5.03247 5.05636 5.17339 5.22444 5.30513 5.40729 5.58357 5.70726 5.75749 5.86038 5.90220 5.99558 6.12408 6.28564 6.54200 6.82711 7.59948 8.59480 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.007126 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.300755 B = 3928.567206 C = 5468.849877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.688 5.688 3 C 0.123 3.877 4 H 0.064 0.936 5 C -0.175 4.175 6 C -0.099 4.099 7 C -0.109 4.109 8 C -0.125 4.125 9 C -0.126 4.126 10 C -0.064 4.064 11 C -0.183 4.183 12 C -0.077 4.077 13 C -0.244 4.244 14 C 0.123 3.877 15 O -0.237 6.237 16 C -0.397 4.397 17 H 0.081 0.919 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.964 3.036 21 H -0.266 1.266 22 H -0.266 1.266 23 H -0.264 1.264 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.029 0.971 27 H 0.351 0.649 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.139 0.861 38 H 0.107 0.893 39 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.201 -17.527 8.385 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.319 5.319 3 C 0.014 3.986 4 H 0.083 0.917 5 C -0.233 4.233 6 C -0.100 4.100 7 C -0.166 4.166 8 C -0.144 4.144 9 C -0.127 4.127 10 C -0.081 4.081 11 C -0.201 4.201 12 C -0.095 4.095 13 C -0.263 4.263 14 C 0.074 3.926 15 O -0.144 6.144 16 C -0.474 4.474 17 H 0.098 0.902 18 C -0.185 4.185 19 N -0.563 5.563 20 Si 0.787 3.213 21 H -0.191 1.191 22 H -0.191 1.191 23 H -0.189 1.189 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.170 0.830 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.173 0.827 36 H 0.172 0.828 37 H 0.157 0.843 38 H 0.125 0.875 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.372 -17.317 7.776 20.364 hybrid contribution -0.334 1.556 0.605 1.703 sum -7.706 -15.761 8.381 19.443 Atomic orbital electron populations 1.22250 0.86923 1.02726 1.00286 1.60387 1.08371 1.12454 1.50643 1.20408 0.92285 0.90344 0.95597 0.91722 1.22425 1.02573 1.01900 0.96427 1.21941 0.95944 0.97165 0.94909 1.20978 0.95872 0.98798 1.00904 1.21138 0.94978 1.00323 0.97929 1.18459 0.97318 0.91153 1.05818 1.21462 0.94845 0.95458 0.96384 1.21176 0.96865 0.98905 1.03198 1.21209 0.99594 0.91215 0.97488 1.21275 0.97915 0.99475 1.07621 1.19820 0.92455 0.85600 0.94739 1.83485 1.42497 1.12214 1.76246 1.20723 1.03880 0.83546 1.39214 0.90199 1.25201 1.02626 0.93288 0.97418 1.69726 1.40053 0.98907 1.47633 0.85309 0.78821 0.78165 0.79030 1.19089 1.19073 1.18883 0.89818 0.92778 0.95272 0.82987 0.91365 0.90678 0.93310 0.89469 0.92673 0.90873 0.89572 0.82715 0.82804 0.84279 0.87537 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.50 127.69 1.34 1.79 16 2 N -0.69 -13.44 6.42 -518.53 -3.33 -16.77 16 3 C 0.12 3.01 2.80 44.17 0.12 3.13 16 4 H 0.06 1.79 7.49 -2.39 -0.02 1.77 16 5 C -0.17 -3.64 9.04 71.98 0.65 -2.99 16 6 C -0.10 -2.88 5.00 -17.62 -0.09 -2.97 16 7 C -0.11 -2.57 8.01 71.24 0.57 -2.00 16 8 C -0.12 -4.70 8.95 23.60 0.21 -4.49 16 9 C -0.13 -5.10 5.15 -20.01 -0.10 -5.20 16 10 C -0.06 -2.04 7.61 22.51 0.17 -1.86 16 11 C -0.18 -5.47 10.03 22.26 0.22 -5.24 16 12 C -0.08 -2.70 10.03 22.30 0.22 -2.48 16 13 C -0.24 -11.07 9.16 22.36 0.20 -10.87 16 14 C 0.12 6.01 6.65 22.86 0.15 6.17 16 15 O -0.24 -13.30 8.03 -21.35 -0.17 -13.47 16 16 C -0.40 -24.00 9.95 67.92 0.68 -23.32 16 17 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16 18 C 0.01 0.77 5.49 84.83 0.47 1.24 16 19 N -0.92 -56.02 13.96 21.61 0.30 -55.72 16 20 Si 0.96 46.66 28.62 68.60 1.96 48.62 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 H -0.26 -12.86 7.11 99.48 0.71 -12.15 16 24 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 1.00 8.05 -2.39 -0.02 0.98 16 26 H 0.03 0.43 7.44 -2.39 -0.02 0.41 16 27 H 0.35 5.45 8.56 -89.69 -0.77 4.68 16 28 H 0.07 1.20 7.45 -2.39 -0.02 1.18 16 29 H 0.07 1.33 7.00 -2.39 -0.02 1.31 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.72 6.95 -2.39 -0.02 1.70 16 32 H 0.05 1.51 6.02 -2.39 -0.01 1.50 16 33 H 0.07 1.40 6.91 -2.39 -0.02 1.39 16 34 H 0.09 3.61 7.89 -2.91 -0.02 3.59 16 35 H 0.16 3.92 5.58 -2.91 -0.02 3.91 16 36 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 38 H 0.11 5.31 5.64 -2.91 -0.02 5.29 16 39 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -68.15 317.86 3.88 -64.28 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.29 Total: 22.15 kcal Atomic # 6 Polarization: -53.92 SS G_CDS: 4.82 Total: -49.10 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -3.03 Total: -72.48 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.17 Total: -13.47 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.96 Total: 48.62 kcal Total: -68.15 3.88 -64.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231763093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.799 kcal (2) G-P(sol) polarization free energy of solvation -68.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds