Wall clock time and date at job start Mon Mar 30 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46894 * 111.00150 * 2 1 4 4 H 1.09001 * 109.47394 * 34.99779 * 3 2 1 5 5 C 1.53003 * 109.46755 * 274.99843 * 3 2 1 6 6 C 1.50701 * 109.47455 * 154.99767 * 3 2 1 7 7 C 1.50704 * 119.99908 * 55.00043 * 6 3 2 8 8 C 1.32670 * 120.00168 * 234.99856 * 6 3 2 9 9 C 1.47674 * 119.99696 * 173.26153 * 8 6 3 10 10 C 1.39505 * 120.18723 * 324.98043 * 9 8 6 11 11 C 1.37949 * 119.92320 * 180.27521 * 10 9 8 12 12 C 1.38480 * 120.29744 * 359.75392 * 11 10 9 13 13 C 1.38112 * 120.36837 * 359.97438 * 12 11 10 14 14 C 1.38738 * 120.07307 * 359.97438 * 13 12 11 15 15 O 1.35637 * 120.14958 * 180.02562 * 14 13 12 16 16 C 1.34803 * 117.00143 * 5.58028 * 15 14 13 17 17 H 1.08001 * 119.99806 * 354.92385 * 16 15 14 18 18 C 1.38648 * 120.00146 * 174.65324 * 16 15 14 19 19 N 1.31560 * 120.00063 * 0.27283 * 18 16 15 20 20 Si 1.86807 * 120.00019 * 180.27681 * 18 16 15 21 21 H 1.48501 * 109.47027 * 59.99596 * 20 18 16 22 22 H 1.48498 * 109.46982 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46730 * 299.99561 * 20 18 16 24 24 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47500 * 300.00127 * 1 2 3 26 26 H 1.09003 * 109.47363 * 60.00656 * 1 2 3 27 27 H 1.00899 * 110.99920 * 123.95122 * 2 1 3 28 28 H 1.08996 * 109.47395 * 59.99951 * 5 3 2 29 29 H 1.09007 * 109.46638 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.47018 * 299.99347 * 5 3 2 31 31 H 1.09004 * 109.46780 * 273.41951 * 7 6 3 32 32 H 1.08998 * 109.47036 * 33.41603 * 7 6 3 33 33 H 1.08998 * 109.47421 * 153.42098 * 7 6 3 34 34 H 1.07995 * 119.99587 * 353.26061 * 8 6 3 35 35 H 1.08000 * 120.03221 * 0.02750 * 10 9 8 36 36 H 1.08004 * 119.84807 * 179.76551 * 11 10 9 37 37 H 1.07998 * 119.81548 * 180.02562 * 12 11 10 38 38 H 1.08001 * 119.96698 * 179.97438 * 13 12 11 39 39 H 0.96994 * 120.00315 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3397 2.0123 0.5894 5 6 2.0608 1.8925 -1.4371 6 6 3.3776 1.3789 0.6005 7 6 4.4487 0.4808 0.0373 8 6 3.6514 2.1762 1.6249 9 6 4.9567 2.0781 2.3085 10 6 5.5821 0.8393 2.4520 11 6 6.7987 0.7532 3.0965 12 6 7.4058 1.8923 3.5981 13 6 6.8002 3.1256 3.4578 14 6 5.5771 3.2301 2.8114 15 8 4.9813 4.4406 2.6723 16 6 5.6813 5.5178 3.0807 17 1 6.6348 5.3881 3.5710 18 6 5.1798 6.7925 2.8664 19 7 4.0182 6.9506 2.2692 20 14 6.1534 8.2856 3.4255 21 1 7.4728 8.2997 2.7440 22 1 5.4056 9.5214 3.0812 23 1 6.3561 8.2222 4.8952 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8305 -0.5261 0.7814 28 1 1.0611 1.8870 -1.8714 29 1 2.4510 2.9103 -1.4370 30 1 2.7166 1.2516 -2.0264 31 1 4.3881 -0.4987 0.5118 32 1 4.3045 0.3733 -1.0377 33 1 5.4282 0.9181 0.2306 34 1 2.9197 2.8969 1.9588 35 1 5.1122 -0.0517 2.0625 36 1 7.2799 -0.2070 3.2103 37 1 8.3585 1.8159 4.1009 38 1 7.2793 4.0097 3.8518 39 1 3.6675 7.8424 2.1189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231763096.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:34 Heat of formation + Delta-G solvation = 10.063261 kcal Electronic energy + Delta-G solvation = -19366.401230 eV Core-core repulsion = 16467.901456 eV Total energy + Delta-G solvation = -2898.499774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.25707 -37.66586 -36.38446 -33.94461 -32.34575 -30.56900 -29.11671 -28.57516 -26.70579 -25.43288 -25.22532 -22.41359 -21.41724 -20.39871 -18.16786 -17.94021 -16.67428 -15.83926 -15.26562 -14.83178 -14.47594 -14.36504 -14.04570 -13.74287 -13.66445 -13.21444 -12.83861 -12.68763 -12.56862 -12.09759 -11.87665 -11.68444 -11.62610 -11.33559 -11.26842 -11.14402 -10.84944 -10.82106 -10.62440 -10.44369 -10.18430 -9.37787 -8.97195 -8.81766 -8.36489 -7.75413 -7.03880 -6.49537 -4.07375 1.76464 2.36733 3.01680 3.10524 3.12144 3.14412 3.92973 4.41952 4.59542 5.03061 5.05884 5.22608 5.31929 5.42451 5.51933 5.61857 5.67675 5.72135 5.79008 5.84898 5.87821 6.03804 6.09139 6.10704 6.14748 6.25218 6.30969 6.48753 6.57822 6.69127 6.86288 6.95989 7.00938 7.11422 7.27751 7.34272 7.36847 7.47233 7.58331 7.81068 7.95429 8.95925 9.65522 10.67899 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017478 B = 0.005903 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.635019 B = 4742.396437 C = 6036.355919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.687 5.687 3 C 0.128 3.872 4 H 0.046 0.954 5 C -0.135 4.135 6 C -0.169 4.169 7 C -0.101 4.101 8 C -0.057 4.057 9 C -0.141 4.141 10 C -0.063 4.063 11 C -0.220 4.220 12 C -0.069 4.069 13 C -0.237 4.237 14 C 0.164 3.836 15 O -0.168 6.168 16 C -0.394 4.394 17 H 0.092 0.908 18 C 0.042 3.958 19 N -0.859 5.859 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.270 1.270 24 H 0.063 0.937 25 H 0.020 0.980 26 H 0.062 0.938 27 H 0.342 0.658 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 -10.322 -2.333 10.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.317 5.317 3 C 0.019 3.981 4 H 0.064 0.936 5 C -0.193 4.193 6 C -0.169 4.169 7 C -0.157 4.157 8 C -0.076 4.076 9 C -0.143 4.143 10 C -0.081 4.081 11 C -0.239 4.239 12 C -0.088 4.088 13 C -0.256 4.256 14 C 0.109 3.891 15 O -0.070 6.070 16 C -0.470 4.470 17 H 0.109 0.891 18 C -0.163 4.163 19 N -0.493 5.493 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.195 1.195 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.081 0.919 27 H 0.159 0.841 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.145 0.855 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.750 -10.097 -3.192 10.734 hybrid contribution 0.361 1.173 1.303 1.790 sum -1.390 -8.924 -1.889 9.227 Atomic orbital electron populations 1.22223 0.88433 1.01313 1.00324 1.60526 1.07057 1.14331 1.49823 1.20394 0.92474 0.88717 0.96468 0.93591 1.21760 1.01122 1.00823 0.95589 1.21683 0.95354 1.01897 0.97978 1.20856 0.97272 0.97714 0.99904 1.21415 0.95201 0.96573 0.94447 1.18074 0.97145 0.91391 1.07668 1.21069 0.94494 0.95803 0.96718 1.20541 0.98174 0.97631 1.07510 1.20818 0.98183 0.92422 0.97360 1.21117 0.98233 0.98299 1.07971 1.19478 0.90799 0.86816 0.91958 1.83927 1.40752 1.10752 1.71562 1.21300 1.04216 0.82561 1.38919 0.89104 1.25281 0.96522 0.98066 0.96460 1.70024 1.17114 1.23711 1.38499 0.85791 0.79090 0.79444 0.79191 1.19457 1.20234 1.19473 0.91818 0.96118 0.91878 0.84078 0.93373 0.92165 0.92088 0.92479 0.92670 0.91395 0.86823 0.86113 0.87598 0.87572 0.85530 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.50 60.06 0.63 0.93 16 2 N -0.69 -8.82 6.49 -115.25 -0.75 -9.57 16 3 C 0.13 1.92 2.83 -68.87 -0.19 1.72 16 4 H 0.05 0.74 7.49 -51.93 -0.39 0.35 16 5 C -0.14 -1.94 9.29 37.16 0.35 -1.59 16 6 C -0.17 -2.80 4.66 -101.24 -0.47 -3.28 16 7 C -0.10 -1.51 7.99 36.01 0.29 -1.23 16 8 C -0.06 -1.14 8.96 -37.62 -0.34 -1.48 16 9 C -0.14 -2.98 5.19 -104.85 -0.54 -3.52 16 10 C -0.06 -1.13 7.58 -39.22 -0.30 -1.42 16 11 C -0.22 -3.80 10.03 -39.60 -0.40 -4.19 16 12 C -0.07 -1.28 10.03 -39.54 -0.40 -1.68 16 13 C -0.24 -5.15 9.16 -39.44 -0.36 -5.52 16 14 C 0.16 3.96 6.66 -38.67 -0.26 3.70 16 15 O -0.17 -4.69 9.20 0.47 0.00 -4.69 16 16 C -0.39 -10.87 9.49 30.88 0.29 -10.58 16 17 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 18 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 19 N -0.86 -24.80 13.67 55.48 0.76 -24.04 16 20 Si 0.94 20.30 29.55 -169.99 -5.02 15.28 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.02 0.23 8.05 -51.93 -0.42 -0.19 16 26 H 0.06 0.68 7.44 -51.93 -0.39 0.29 16 27 H 0.34 4.20 8.43 -39.29 -0.33 3.87 16 28 H 0.05 0.62 7.45 -51.93 -0.39 0.23 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.85 7.01 -51.93 -0.36 0.49 16 31 H 0.06 0.75 6.91 -51.93 -0.36 0.39 16 32 H 0.05 0.78 6.91 -51.93 -0.36 0.42 16 33 H 0.07 1.12 5.98 -51.93 -0.31 0.81 16 34 H 0.11 2.46 7.88 -52.49 -0.41 2.05 16 35 H 0.12 1.85 5.43 -52.49 -0.28 1.57 16 36 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 39 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 318.64 15.07 4.80 4.80 Total: -1.00 -29.22 318.64 -7.40 -36.63 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.40 Total: 8.70 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -1.80 Total: -27.10 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.01 Total: -33.62 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: 0.00 Total: -4.69 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.22 -7.40 -36.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231763096.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.690 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds