Wall clock time and date at job start Mon Mar 30 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46894 * 111.00150 * 2 1 4 4 H 1.09001 * 109.47394 * 34.99779 * 3 2 1 5 5 C 1.53003 * 109.46755 * 274.99843 * 3 2 1 6 6 C 1.50701 * 109.47455 * 154.99767 * 3 2 1 7 7 C 1.50704 * 119.99908 * 55.00043 * 6 3 2 8 8 C 1.32670 * 120.00168 * 234.99856 * 6 3 2 9 9 C 1.47674 * 119.99696 * 173.26153 * 8 6 3 10 10 C 1.39505 * 120.18723 * 324.98043 * 9 8 6 11 11 C 1.37949 * 119.92320 * 180.27521 * 10 9 8 12 12 C 1.38480 * 120.29744 * 359.75392 * 11 10 9 13 13 C 1.38112 * 120.36837 * 359.97438 * 12 11 10 14 14 C 1.38738 * 120.07307 * 359.97438 * 13 12 11 15 15 O 1.35637 * 120.14958 * 180.02562 * 14 13 12 16 16 C 1.34803 * 117.00143 * 5.58028 * 15 14 13 17 17 H 1.08001 * 119.99806 * 354.92385 * 16 15 14 18 18 C 1.38648 * 120.00146 * 174.65324 * 16 15 14 19 19 N 1.31560 * 120.00063 * 0.27283 * 18 16 15 20 20 Si 1.86807 * 120.00019 * 180.27681 * 18 16 15 21 21 H 1.48501 * 109.47027 * 59.99596 * 20 18 16 22 22 H 1.48498 * 109.46982 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46730 * 299.99561 * 20 18 16 24 24 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47500 * 300.00127 * 1 2 3 26 26 H 1.09003 * 109.47363 * 60.00656 * 1 2 3 27 27 H 1.00899 * 110.99920 * 123.95122 * 2 1 3 28 28 H 1.08996 * 109.47395 * 59.99951 * 5 3 2 29 29 H 1.09007 * 109.46638 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.47018 * 299.99347 * 5 3 2 31 31 H 1.09004 * 109.46780 * 273.41951 * 7 6 3 32 32 H 1.08998 * 109.47036 * 33.41603 * 7 6 3 33 33 H 1.08998 * 109.47421 * 153.42098 * 7 6 3 34 34 H 1.07995 * 119.99587 * 353.26061 * 8 6 3 35 35 H 1.08000 * 120.03221 * 0.02750 * 10 9 8 36 36 H 1.08004 * 119.84807 * 179.76551 * 11 10 9 37 37 H 1.07998 * 119.81548 * 180.02562 * 12 11 10 38 38 H 1.08001 * 119.96698 * 179.97438 * 13 12 11 39 39 H 0.96994 * 120.00315 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3397 2.0123 0.5894 5 6 2.0608 1.8925 -1.4371 6 6 3.3776 1.3789 0.6005 7 6 4.4487 0.4808 0.0373 8 6 3.6514 2.1762 1.6249 9 6 4.9567 2.0781 2.3085 10 6 5.5821 0.8393 2.4520 11 6 6.7987 0.7532 3.0965 12 6 7.4058 1.8923 3.5981 13 6 6.8002 3.1256 3.4578 14 6 5.5771 3.2301 2.8114 15 8 4.9813 4.4406 2.6723 16 6 5.6813 5.5178 3.0807 17 1 6.6348 5.3881 3.5710 18 6 5.1798 6.7925 2.8664 19 7 4.0182 6.9506 2.2692 20 14 6.1534 8.2856 3.4255 21 1 7.4728 8.2997 2.7440 22 1 5.4056 9.5214 3.0812 23 1 6.3561 8.2222 4.8952 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8305 -0.5261 0.7814 28 1 1.0611 1.8870 -1.8714 29 1 2.4510 2.9103 -1.4370 30 1 2.7166 1.2516 -2.0264 31 1 4.3881 -0.4987 0.5118 32 1 4.3045 0.3733 -1.0377 33 1 5.4282 0.9181 0.2306 34 1 2.9197 2.8969 1.9588 35 1 5.1122 -0.0517 2.0625 36 1 7.2799 -0.2070 3.2103 37 1 8.3585 1.8159 4.1009 38 1 7.2793 4.0097 3.8518 39 1 3.6675 7.8424 2.1189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231763096.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:33 Heat of formation + Delta-G solvation = -8.332920 kcal Electronic energy + Delta-G solvation = -19367.198949 eV Core-core repulsion = 16467.901456 eV Total energy + Delta-G solvation = -2899.297492 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91111 -39.07704 -37.96910 -35.26435 -34.31357 -31.87822 -30.72937 -29.92489 -28.12142 -27.33492 -26.33411 -23.79580 -23.06798 -21.80646 -19.83701 -19.53598 -18.40703 -17.12164 -16.66190 -16.48656 -16.07342 -15.82127 -15.43575 -15.30859 -15.25387 -14.50281 -14.23375 -14.09198 -13.97291 -13.57353 -13.21323 -13.17878 -12.95384 -12.86580 -12.58527 -12.44769 -12.43139 -12.23749 -12.14690 -11.98000 -11.65872 -11.10361 -10.81320 -10.41493 -9.45317 -9.30751 -8.68056 -8.48365 -6.15125 0.24279 0.75945 1.32670 1.43574 1.48796 1.51098 2.15969 2.85713 3.20958 3.30875 3.51105 3.72553 4.03788 4.17932 4.22863 4.32099 4.39522 4.43568 4.55281 4.63658 4.69096 4.71190 4.83403 4.89528 4.92157 4.95824 5.04784 5.11194 5.12125 5.19842 5.31235 5.35594 5.57421 5.62248 5.77296 5.81715 5.88328 6.01967 6.12726 6.26777 6.47200 6.96261 7.78674 8.74232 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017478 B = 0.005903 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.635019 B = 4742.396437 C = 6036.355919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.679 5.679 3 C 0.127 3.873 4 H 0.027 0.973 5 C -0.132 4.132 6 C -0.128 4.128 7 C -0.101 4.101 8 C -0.104 4.104 9 C -0.144 4.144 10 C -0.061 4.061 11 C -0.194 4.194 12 C -0.071 4.071 13 C -0.252 4.252 14 C 0.117 3.883 15 O -0.221 6.221 16 C -0.416 4.416 17 H 0.100 0.900 18 C -0.020 4.020 19 N -0.918 5.918 20 Si 1.016 2.984 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.257 1.257 24 H 0.087 0.913 25 H 0.015 0.985 26 H 0.065 0.935 27 H 0.347 0.653 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.116 0.884 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 -13.595 -2.666 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.310 5.310 3 C 0.017 3.983 4 H 0.045 0.955 5 C -0.189 4.189 6 C -0.129 4.129 7 C -0.157 4.157 8 C -0.124 4.124 9 C -0.145 4.145 10 C -0.079 4.079 11 C -0.212 4.212 12 C -0.089 4.089 13 C -0.271 4.271 14 C 0.066 3.934 15 O -0.127 6.127 16 C -0.492 4.492 17 H 0.117 0.883 18 C -0.218 4.218 19 N -0.556 5.556 20 Si 0.836 3.164 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.182 1.182 24 H 0.106 0.894 25 H 0.034 0.966 26 H 0.084 0.916 27 H 0.165 0.835 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.161 0.839 38 H 0.134 0.866 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.277 -13.436 -3.514 13.891 hybrid contribution -0.104 1.781 1.340 2.231 sum -0.381 -11.655 -2.173 11.862 Atomic orbital electron populations 1.22312 0.87053 1.02834 1.00225 1.60544 1.08312 1.12235 1.49941 1.20376 0.91304 0.90104 0.96498 0.95538 1.21718 1.02327 0.99762 0.95137 1.22030 0.96537 0.99213 0.95074 1.20919 0.95406 0.98328 1.01014 1.21188 0.95029 0.98593 0.97543 1.18468 0.97287 0.91807 1.06914 1.21468 0.94843 0.95320 0.96268 1.21148 0.97083 0.99090 1.03914 1.21236 0.99416 0.91217 0.97040 1.21258 0.97819 0.99813 1.08218 1.20132 0.92530 0.86692 0.94088 1.83906 1.42412 1.12022 1.74369 1.21783 1.04752 0.83371 1.39268 0.88315 1.26551 0.97627 1.01166 0.96473 1.70183 1.19525 1.24361 1.41498 0.84682 0.77637 0.74900 0.79219 1.18224 1.19605 1.18159 0.89433 0.96649 0.91633 0.83502 0.91704 0.94188 0.91024 0.89273 0.91150 0.92714 0.90551 0.82766 0.82876 0.83875 0.86579 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.50 127.69 1.34 1.84 16 2 N -0.68 -15.83 6.49 -518.55 -3.37 -19.20 16 3 C 0.13 3.72 2.83 44.17 0.13 3.85 16 4 H 0.03 0.89 7.49 -2.39 -0.02 0.87 16 5 C -0.13 -3.66 9.29 71.98 0.67 -3.00 16 6 C -0.13 -4.20 4.66 -17.62 -0.08 -4.29 16 7 C -0.10 -2.70 7.99 71.24 0.57 -2.13 16 8 C -0.10 -4.37 8.96 23.60 0.21 -4.16 16 9 C -0.14 -6.17 5.19 -20.01 -0.10 -6.27 16 10 C -0.06 -2.03 7.58 22.51 0.17 -1.86 16 11 C -0.19 -5.84 10.03 22.26 0.22 -5.62 16 12 C -0.07 -2.43 10.03 22.30 0.22 -2.20 16 13 C -0.25 -11.15 9.16 22.36 0.20 -10.95 16 14 C 0.12 5.92 6.66 22.86 0.15 6.07 16 15 O -0.22 -13.47 9.20 -21.22 -0.20 -13.66 16 16 C -0.42 -24.55 9.49 67.92 0.64 -23.91 16 17 H 0.10 5.37 5.21 -2.91 -0.02 5.36 16 18 C -0.02 -1.17 5.49 84.83 0.47 -0.71 16 19 N -0.92 -56.90 13.67 21.61 0.30 -56.61 16 20 Si 1.02 43.37 29.55 68.60 2.03 45.39 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 24 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.01 0.32 8.05 -2.39 -0.02 0.30 16 26 H 0.06 1.28 7.44 -2.39 -0.02 1.26 16 27 H 0.35 7.50 8.43 -89.69 -0.76 6.75 16 28 H 0.06 1.59 7.45 -2.39 -0.02 1.57 16 29 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.07 1.84 7.01 -2.39 -0.02 1.82 16 31 H 0.09 1.90 6.91 -2.39 -0.02 1.88 16 32 H 0.07 1.74 6.91 -2.39 -0.02 1.72 16 33 H 0.05 1.66 5.98 -2.39 -0.01 1.65 16 34 H 0.08 3.71 7.88 -2.91 -0.02 3.69 16 35 H 0.15 4.00 5.43 -2.91 -0.02 3.98 16 36 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 37 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -70.53 318.64 3.88 -66.66 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.30 Total: 30.74 kcal Atomic # 6 Polarization: -58.14 SS G_CDS: 4.81 Total: -53.33 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -3.07 Total: -75.80 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.20 Total: -13.66 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -70.53 3.88 -66.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231763096.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.326 kcal (2) G-P(sol) polarization free energy of solvation -70.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds