Wall clock time and date at job start Mon Mar 30 2020 06:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46904 * 110.99596 * 2 1 4 4 H 1.09004 * 110.27025 * 327.07093 * 3 2 1 5 5 C 1.54343 * 110.29900 * 204.99989 * 3 2 1 6 6 C 1.54342 * 102.39345 * 267.34542 * 5 3 2 7 7 C 1.51380 * 105.17499 * 333.63625 * 6 5 3 8 8 C 1.38406 * 130.33885 * 197.19840 * 7 6 5 9 9 C 1.38594 * 120.17469 * 179.97438 * 8 7 6 10 10 O 1.35902 * 120.09384 * 180.02562 * 9 8 7 11 11 C 1.42898 * 116.99909 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47180 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47159 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 C 1.38754 * 119.81494 * 0.27519 * 9 8 7 22 22 C 1.38003 * 119.87442 * 359.46358 * 21 9 8 23 23 C 1.38255 * 109.75459 * 17.19611 * 7 6 5 24 24 H 1.08999 * 109.46549 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46950 * 300.00061 * 1 2 3 26 26 H 1.09000 * 109.47213 * 60.00343 * 1 2 3 27 27 H 1.00894 * 110.99992 * 236.04748 * 2 1 3 28 28 H 1.09005 * 110.82157 * 149.12298 * 5 3 2 29 29 H 1.08994 * 110.99483 * 25.65270 * 5 3 2 30 30 H 1.08997 * 110.30148 * 214.70934 * 6 5 3 31 31 H 1.09005 * 110.38122 * 92.60210 * 6 5 3 32 32 H 1.08007 * 119.91725 * 0.02562 * 8 7 6 33 33 H 1.09004 * 109.47053 * 59.99688 * 11 10 9 34 34 H 1.09000 * 109.47521 * 300.00030 * 11 10 9 35 35 H 1.09004 * 109.47066 * 60.00083 * 12 11 10 36 36 H 1.08994 * 109.47405 * 299.99913 * 12 11 10 37 37 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 38 38 H 1.07996 * 120.06252 * 179.70600 * 21 9 8 39 39 H 1.07997 * 119.85735 * 180.29774 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3295 2.0316 -0.5558 5 6 3.4121 1.4013 -0.6118 6 6 4.3133 1.2487 0.6319 7 6 3.4981 1.8002 1.7821 8 6 3.8917 2.2074 3.0450 9 6 2.9540 2.6862 3.9463 10 8 3.3423 3.0861 5.1857 11 6 2.3211 3.5677 6.0616 12 6 2.9444 3.9676 7.4004 13 6 1.8676 4.4761 8.3239 14 1 0.8412 4.5102 7.9896 15 6 2.1917 4.8920 9.5980 16 7 3.4415 4.8501 10.0052 17 14 0.8558 5.5151 10.7453 18 1 -0.1494 4.4438 10.9626 19 1 1.4601 5.8987 12.0464 20 1 0.1947 6.6985 10.1389 21 6 1.6168 2.7513 3.5815 22 6 1.2283 2.3496 2.3196 23 6 2.1659 1.8709 1.4190 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8307 -0.5261 -0.7813 28 1 3.5987 2.3522 -1.1110 29 1 3.5578 0.5690 -1.3003 30 1 5.2301 1.8249 0.5076 31 1 4.5479 0.1982 0.8041 32 1 4.9324 2.1527 3.3286 33 1 1.5827 2.7827 6.2250 34 1 1.8364 4.4347 5.6127 35 1 3.6831 4.7525 7.2373 36 1 3.4287 3.1005 7.8492 37 1 3.6696 5.1430 10.9014 38 1 0.8822 3.1192 4.2823 39 1 0.1881 2.4049 2.0343 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232413525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:12 Heat of formation + Delta-G solvation = -43.069203 kcal Electronic energy + Delta-G solvation = -18777.759992 eV Core-core repulsion = 15876.956221 eV Total energy + Delta-G solvation = -2900.803770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47486 -39.83026 -36.90413 -35.46106 -34.56765 -32.59637 -31.39774 -29.41809 -28.00014 -26.81918 -24.99544 -23.96917 -23.08472 -21.57472 -21.24349 -19.06386 -18.05363 -17.18520 -16.98109 -16.61161 -16.53561 -16.42620 -16.09948 -15.46148 -14.50151 -14.38532 -14.35512 -14.30012 -14.17490 -13.81597 -13.15700 -13.01666 -12.96580 -12.73249 -12.59940 -12.47695 -12.35932 -12.03437 -11.77579 -11.73467 -11.56360 -11.47045 -11.38098 -10.62586 -9.73472 -9.38006 -8.97576 -8.27653 -6.41841 0.37870 0.46579 1.40122 1.44449 1.52461 2.24299 2.48373 2.72291 3.06545 3.40236 3.58590 3.65543 3.92500 4.05676 4.20368 4.24290 4.24614 4.37982 4.43480 4.49405 4.58844 4.61274 4.69187 4.72975 4.82542 4.96909 5.02910 5.09707 5.19368 5.26636 5.29621 5.37178 5.44769 5.46703 5.66492 5.69378 5.87815 6.05846 6.06927 6.54264 6.58652 6.72540 7.28301 8.85425 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.039441 B = 0.003432 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.756770 B = 8156.355993 C = 8711.439881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.694 5.694 3 C 0.133 3.867 4 H 0.060 0.940 5 C -0.113 4.113 6 C -0.074 4.074 7 C -0.054 4.054 8 C -0.166 4.166 9 C 0.112 3.888 10 O -0.341 6.341 11 C 0.085 3.915 12 C 0.029 3.971 13 C -0.549 4.549 14 H 0.071 0.929 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.977 3.023 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.263 1.263 21 C -0.224 4.224 22 C -0.062 4.062 23 C -0.134 4.134 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.034 0.966 27 H 0.355 0.645 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.058 0.942 34 H 0.060 0.940 35 H -0.001 1.001 36 H -0.002 1.002 37 H 0.267 0.733 38 H 0.128 0.872 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.095 -8.430 -24.623 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.328 5.328 3 C 0.023 3.977 4 H 0.078 0.922 5 C -0.150 4.150 6 C -0.111 4.111 7 C -0.055 4.055 8 C -0.185 4.185 9 C 0.066 3.934 10 O -0.255 6.255 11 C 0.011 3.989 12 C -0.008 4.008 13 C -0.587 4.587 14 H 0.089 0.911 15 C -0.197 4.197 16 N -0.570 5.570 17 Si 0.800 3.200 18 H -0.188 1.188 19 H -0.207 1.207 20 H -0.188 1.188 21 C -0.243 4.243 22 C -0.080 4.080 23 C -0.136 4.136 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.176 0.824 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.143 0.857 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.076 0.924 38 H 0.146 0.854 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.747 -8.476 -23.729 25.474 hybrid contribution -0.716 0.761 0.543 1.177 sum -4.463 -7.715 -23.186 24.840 Atomic orbital electron populations 1.22256 0.87233 1.02429 1.00327 1.60224 1.08440 1.13174 1.50932 1.20863 0.97133 0.89493 0.90192 0.92243 1.22529 0.91684 1.04255 0.96552 1.21087 0.97969 1.01584 0.90486 1.20642 0.96095 0.95324 0.93414 1.19974 0.99174 1.06111 0.93239 1.19299 0.93852 0.95235 0.84976 1.86071 1.38826 1.78102 1.22527 1.22862 0.89324 0.97384 0.89361 1.18955 0.96365 0.95429 0.90037 1.21376 0.94573 1.43997 0.98736 0.91132 1.26060 0.98242 0.95443 0.99930 1.70119 1.19568 1.47840 1.19488 0.85319 0.78319 0.79139 0.77175 1.18822 1.20665 1.18781 1.21301 0.94744 1.08866 0.99350 1.20566 0.99804 0.96180 0.91490 1.20653 0.93382 1.01830 0.97687 0.90563 0.93041 0.94753 0.82403 0.89277 0.87719 0.89531 0.89154 0.85654 0.92385 0.92227 0.98296 0.98362 0.92378 0.85368 0.84649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.54 127.69 1.35 1.73 16 2 N -0.69 -10.98 6.70 -514.94 -3.45 -14.43 16 3 C 0.13 2.27 3.20 44.84 0.14 2.41 16 4 H 0.06 0.94 7.82 -2.38 -0.02 0.92 16 5 C -0.11 -1.41 6.73 31.51 0.21 -1.20 16 6 C -0.07 -1.30 6.77 30.52 0.21 -1.10 16 7 C -0.05 -1.44 6.13 -19.60 -0.12 -1.56 16 8 C -0.17 -5.50 9.98 22.39 0.22 -5.28 16 9 C 0.11 4.27 6.68 22.48 0.15 4.42 16 10 O -0.34 -15.40 10.14 -92.44 -0.94 -16.34 16 11 C 0.09 3.91 4.68 71.98 0.34 4.25 16 12 C 0.03 1.65 5.34 29.85 0.16 1.81 16 13 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 14 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 15 C 0.00 0.11 5.46 84.66 0.46 0.57 16 16 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 17 Si 0.98 44.02 29.54 68.60 2.03 46.05 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 21 C -0.22 -7.54 9.04 22.34 0.20 -7.33 16 22 C -0.06 -1.72 9.75 22.29 0.22 -1.50 16 23 C -0.13 -3.38 5.74 -19.57 -0.11 -3.49 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.88 7.43 -2.39 -0.02 0.87 16 26 H 0.03 0.39 8.07 -2.39 -0.02 0.37 16 27 H 0.36 3.82 8.13 -89.70 -0.73 3.09 16 28 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.10 0.78 7.56 -2.39 -0.02 0.77 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 33 H 0.06 2.53 7.65 -2.38 -0.02 2.51 16 34 H 0.06 2.58 7.67 -2.39 -0.02 2.56 16 35 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 36 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 38 H 0.13 4.24 6.31 -2.91 -0.02 4.22 16 39 H 0.14 3.06 7.65 -2.91 -0.02 3.03 16 Total: -1.00 -69.31 321.39 1.89 -67.42 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.31 Total: 12.25 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 3.66 Total: -37.73 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -3.17 Total: -71.64 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.94 Total: -16.34 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -69.31 1.89 -67.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232413525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.349 kcal (2) G-P(sol) polarization free energy of solvation -69.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds