Wall clock time and date at job start Mon Mar 30 2020 06:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46980 * 2 1 4 4 C 1.46901 * 111.00186 * 175.09927 * 3 2 1 5 5 H 1.09003 * 109.21608 * 38.88351 * 4 3 2 6 6 C 1.52723 * 109.25273 * 279.43796 * 4 3 2 7 7 C 1.53327 * 108.40875 * 188.60147 * 6 4 3 8 8 C 1.52726 * 108.38442 * 69.88646 * 7 6 4 9 9 C 1.50659 * 110.59473 * 308.85836 * 8 7 6 10 10 C 1.39000 * 117.68363 * 197.74369 * 9 8 7 11 11 C 1.37785 * 120.64050 * 180.26148 * 10 9 8 12 12 C 1.38905 * 119.70524 * 0.02562 * 11 10 9 13 13 O 1.35745 * 120.19278 * 179.90072 * 12 11 10 14 14 C 1.34833 * 117.00037 * 354.33877 * 13 12 11 15 15 H 1.08005 * 119.99887 * 5.06460 * 14 13 12 16 16 C 1.38657 * 120.00051 * 185.07088 * 14 13 12 17 17 N 1.31555 * 120.00275 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99770 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47173 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47181 * 119.99857 * 18 16 14 21 21 H 1.48507 * 109.47068 * 239.99623 * 18 16 14 22 22 C 1.38580 * 119.61844 * 359.87903 * 12 11 10 23 23 C 1.37746 * 122.52859 * 17.81281 * 9 8 7 24 24 H 1.08998 * 109.46904 * 60.00258 * 1 2 3 25 25 H 1.09000 * 109.46850 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47163 * 300.00118 * 1 2 3 27 27 H 1.08990 * 109.47395 * 239.99674 * 2 1 3 28 28 H 1.09006 * 109.47128 * 119.99534 * 2 1 3 29 29 H 1.00900 * 111.00489 * 51.14040 * 3 2 1 30 30 H 1.09003 * 109.68872 * 68.85997 * 6 4 3 31 31 H 1.09007 * 109.68325 * 308.34302 * 6 4 3 32 32 H 1.09005 * 109.67995 * 189.60128 * 7 6 4 33 33 H 1.09000 * 109.68052 * 310.12085 * 7 6 4 34 34 H 1.08993 * 109.25840 * 69.14886 * 8 7 6 35 35 H 1.08999 * 109.24865 * 188.57554 * 8 7 6 36 36 H 1.07995 * 119.67687 * 0.24604 * 10 9 8 37 37 H 1.08006 * 120.14911 * 179.97438 * 11 10 9 38 38 H 0.96996 * 120.00226 * 180.02562 * 17 16 14 39 39 H 1.08001 * 119.74906 * 179.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4834 1.4259 0.1172 5 1 3.9133 0.6170 -0.4735 6 6 3.8766 1.2442 1.5817 7 6 5.3818 1.5044 1.7147 8 6 5.6341 2.9949 1.4974 9 6 4.9809 3.4626 0.2229 10 6 5.4119 4.6679 -0.3191 11 6 4.8525 5.1558 -1.4799 12 6 3.8478 4.4369 -2.1149 13 8 3.2884 4.9093 -3.2580 14 6 3.6685 6.1379 -3.6631 15 1 4.4468 6.6652 -3.1314 16 6 3.0600 6.7245 -4.7623 17 7 2.1122 6.0822 -5.4103 18 14 3.5860 8.4269 -5.3231 19 1 4.6620 8.9310 -4.4325 20 1 4.0906 8.3547 -6.7179 21 1 2.4232 9.3487 -5.2645 22 6 3.4201 3.2344 -1.5750 23 6 3.9878 2.7453 -0.4070 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.5830 1.9230 0.7335 30 1 3.6506 0.2262 1.8990 31 1 3.3255 1.9525 2.2004 32 1 5.7174 1.2168 2.7111 33 1 5.9219 0.9267 0.9645 34 1 5.2245 3.5551 2.3378 35 1 6.7078 3.1725 1.4370 36 1 6.1925 5.2274 0.1747 37 1 5.1932 6.0934 -1.8939 38 1 1.6868 6.4924 -6.1794 39 1 2.6387 2.6740 -2.0668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233604845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:24 Heat of formation + Delta-G solvation = -17.936893 kcal Electronic energy + Delta-G solvation = -19467.809420 eV Core-core repulsion = 16568.095469 eV Total energy + Delta-G solvation = -2899.713952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.68357 -37.91366 -35.98862 -34.25842 -32.16709 -31.69579 -29.18532 -28.75747 -26.82175 -25.05991 -22.93123 -22.03308 -21.90604 -21.11684 -19.29654 -17.56407 -16.70308 -15.59836 -15.40934 -14.92674 -14.51162 -14.44922 -14.20473 -13.84858 -13.44685 -13.26665 -12.79735 -12.63294 -12.51743 -12.33661 -11.86613 -11.71516 -11.59161 -11.52286 -11.28777 -11.10466 -10.97199 -10.83795 -10.42232 -10.35780 -10.23522 -10.06126 -9.20586 -8.73106 -8.19092 -7.90793 -7.01863 -6.36328 -3.94561 2.26028 2.42403 3.16530 3.18183 3.23618 4.03047 4.28766 4.63183 4.87187 4.95812 5.08333 5.11406 5.18733 5.27601 5.34852 5.48273 5.55346 5.60454 5.70112 5.77161 5.82525 5.86402 5.88189 6.01190 6.05073 6.12766 6.14628 6.21702 6.34571 6.39471 6.63390 6.78429 7.02967 7.14909 7.21373 7.42520 7.44274 7.57610 7.64546 7.94101 8.09308 9.09566 9.82925 10.82142 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.005343 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.965817 B = 5238.872822 C = 6410.451452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 N -0.678 5.678 4 C 0.136 3.864 5 H 0.082 0.918 6 C -0.145 4.145 7 C -0.112 4.112 8 C -0.062 4.062 9 C -0.170 4.170 10 C -0.081 4.081 11 C -0.227 4.227 12 C 0.146 3.854 13 O -0.180 6.180 14 C -0.389 4.389 15 H 0.090 0.910 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.939 3.061 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.161 4.161 23 C -0.036 4.036 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.025 0.975 29 H 0.341 0.659 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.268 0.732 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.677 -8.942 12.884 15.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.075 4.075 3 N -0.309 5.309 4 C 0.026 3.974 5 H 0.100 0.900 6 C -0.184 4.184 7 C -0.151 4.151 8 C -0.099 4.099 9 C -0.171 4.171 10 C -0.099 4.099 11 C -0.246 4.246 12 C 0.093 3.907 13 O -0.084 6.084 14 C -0.466 4.466 15 H 0.108 0.892 16 C -0.166 4.166 17 N -0.500 5.500 18 Si 0.764 3.236 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.180 4.180 23 C -0.037 4.037 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.160 0.840 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.078 0.922 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.339 -8.956 11.820 15.013 hybrid contribution 0.435 0.784 0.626 1.093 sum 2.773 -8.172 12.446 15.145 Atomic orbital electron populations 1.21788 0.95172 1.01420 1.02596 1.21940 0.95461 0.89986 1.00124 1.60569 1.05074 1.11669 1.53542 1.20256 0.87424 0.95811 0.93897 0.90006 1.22243 0.97402 1.00885 0.97868 1.21450 0.95660 0.96974 1.00967 1.20201 0.99370 0.94917 0.95432 1.19023 1.01875 0.97308 0.98932 1.20669 0.98772 0.95053 0.95413 1.21134 1.01682 1.02922 0.98866 1.19352 0.91513 0.93050 0.86793 1.83988 1.59442 1.32520 1.32456 1.21343 1.20695 0.91222 1.13305 0.89242 1.25256 0.95809 0.99620 0.95904 1.70053 1.23299 1.37554 1.19062 0.85679 0.78557 0.80554 0.78803 1.19197 1.20234 1.20224 1.20172 1.03689 0.96591 0.97585 1.18874 0.95598 0.94587 0.94604 0.91483 0.92478 0.93016 0.91131 0.95694 0.84025 0.92331 0.91678 0.92293 0.91808 0.92288 0.92088 0.87808 0.85777 0.92222 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.12 37.16 0.38 -1.21 16 2 C 0.05 0.62 6.22 -3.82 -0.02 0.60 16 3 N -0.68 -9.56 5.36 -108.12 -0.58 -10.13 16 4 C 0.14 1.97 2.45 -69.02 -0.17 1.80 16 5 H 0.08 1.20 7.91 -51.93 -0.41 0.79 16 6 C -0.14 -1.73 5.16 -26.70 -0.14 -1.86 16 7 C -0.11 -1.31 5.98 -26.70 -0.16 -1.47 16 8 C -0.06 -0.84 5.67 -28.04 -0.16 -1.00 16 9 C -0.17 -2.99 5.74 -104.54 -0.60 -3.59 16 10 C -0.08 -1.53 9.60 -39.46 -0.38 -1.91 16 11 C -0.23 -5.09 9.17 -39.50 -0.36 -5.45 16 12 C 0.15 3.65 6.64 -39.21 -0.26 3.39 16 13 O -0.18 -5.30 9.76 0.06 0.00 -5.30 16 14 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 15 H 0.09 2.39 5.22 -52.48 -0.27 2.11 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.92 13.67 55.48 0.76 -25.16 16 18 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 C -0.16 -3.55 9.16 -39.25 -0.36 -3.91 16 23 C -0.04 -0.66 5.55 -104.62 -0.58 -1.24 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.02 0.26 7.19 -51.93 -0.37 -0.12 16 29 H 0.34 4.59 8.37 -39.29 -0.33 4.26 16 30 H 0.06 0.61 7.37 -51.93 -0.38 0.23 16 31 H 0.06 0.79 7.95 -51.93 -0.41 0.38 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.77 8.12 -51.93 -0.42 0.34 16 36 H 0.10 1.69 8.05 -52.49 -0.42 1.26 16 37 H 0.12 2.79 5.67 -52.48 -0.30 2.50 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.13 2.84 7.61 -52.49 -0.40 2.44 16 LS Contribution 314.81 15.07 4.74 4.74 Total: -1.00 -30.76 314.81 -8.53 -39.29 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.82 Total: 6.35 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -2.62 Total: -25.75 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.18 Total: -35.29 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: 0.00 Total: -5.30 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.76 -8.53 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233604845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.352 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds