Wall clock time and date at job start Mon Mar 30 2020 06:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46980 * 2 1 4 4 C 1.46901 * 111.00186 * 175.09927 * 3 2 1 5 5 H 1.09003 * 109.21608 * 38.88351 * 4 3 2 6 6 C 1.52723 * 109.25273 * 279.43796 * 4 3 2 7 7 C 1.53327 * 108.40875 * 188.60147 * 6 4 3 8 8 C 1.52726 * 108.38442 * 69.88646 * 7 6 4 9 9 C 1.50659 * 110.59473 * 308.85836 * 8 7 6 10 10 C 1.39000 * 117.68363 * 197.74369 * 9 8 7 11 11 C 1.37785 * 120.64050 * 180.26148 * 10 9 8 12 12 C 1.38905 * 119.70524 * 0.02562 * 11 10 9 13 13 O 1.35745 * 120.19278 * 179.90072 * 12 11 10 14 14 C 1.34833 * 117.00037 * 354.33877 * 13 12 11 15 15 H 1.08005 * 119.99887 * 5.06460 * 14 13 12 16 16 C 1.38657 * 120.00051 * 185.07088 * 14 13 12 17 17 N 1.31555 * 120.00275 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99770 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47173 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47181 * 119.99857 * 18 16 14 21 21 H 1.48507 * 109.47068 * 239.99623 * 18 16 14 22 22 C 1.38580 * 119.61844 * 359.87903 * 12 11 10 23 23 C 1.37746 * 122.52859 * 17.81281 * 9 8 7 24 24 H 1.08998 * 109.46904 * 60.00258 * 1 2 3 25 25 H 1.09000 * 109.46850 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47163 * 300.00118 * 1 2 3 27 27 H 1.08990 * 109.47395 * 239.99674 * 2 1 3 28 28 H 1.09006 * 109.47128 * 119.99534 * 2 1 3 29 29 H 1.00900 * 111.00489 * 51.14040 * 3 2 1 30 30 H 1.09003 * 109.68872 * 68.85997 * 6 4 3 31 31 H 1.09007 * 109.68325 * 308.34302 * 6 4 3 32 32 H 1.09005 * 109.67995 * 189.60128 * 7 6 4 33 33 H 1.09000 * 109.68052 * 310.12085 * 7 6 4 34 34 H 1.08993 * 109.25840 * 69.14886 * 8 7 6 35 35 H 1.08999 * 109.24865 * 188.57554 * 8 7 6 36 36 H 1.07995 * 119.67687 * 0.24604 * 10 9 8 37 37 H 1.08006 * 120.14911 * 179.97438 * 11 10 9 38 38 H 0.96996 * 120.00226 * 180.02562 * 17 16 14 39 39 H 1.08001 * 119.74906 * 179.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4834 1.4259 0.1172 5 1 3.9133 0.6170 -0.4735 6 6 3.8766 1.2442 1.5817 7 6 5.3818 1.5044 1.7147 8 6 5.6341 2.9949 1.4974 9 6 4.9809 3.4626 0.2229 10 6 5.4119 4.6679 -0.3191 11 6 4.8525 5.1558 -1.4799 12 6 3.8478 4.4369 -2.1149 13 8 3.2884 4.9093 -3.2580 14 6 3.6685 6.1379 -3.6631 15 1 4.4468 6.6652 -3.1314 16 6 3.0600 6.7245 -4.7623 17 7 2.1122 6.0822 -5.4103 18 14 3.5860 8.4269 -5.3231 19 1 4.6620 8.9310 -4.4325 20 1 4.0906 8.3547 -6.7179 21 1 2.4232 9.3487 -5.2645 22 6 3.4201 3.2344 -1.5750 23 6 3.9878 2.7453 -0.4070 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.5830 1.9230 0.7335 30 1 3.6506 0.2262 1.8990 31 1 3.3255 1.9525 2.2004 32 1 5.7174 1.2168 2.7111 33 1 5.9219 0.9267 0.9645 34 1 5.2245 3.5551 2.3378 35 1 6.7078 3.1725 1.4370 36 1 6.1925 5.2274 0.1747 37 1 5.1932 6.0934 -1.8939 38 1 1.6868 6.4924 -6.1794 39 1 2.6387 2.6740 -2.0668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233604845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:23 Heat of formation + Delta-G solvation = -37.321199 kcal Electronic energy + Delta-G solvation = -19468.649987 eV Core-core repulsion = 16568.095469 eV Total energy + Delta-G solvation = -2900.554518 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.19619 -39.57356 -37.35560 -35.53925 -34.17156 -32.96748 -30.59672 -30.18356 -28.13962 -26.97828 -24.24173 -23.30556 -23.09022 -22.51660 -20.80651 -19.28725 -18.62393 -16.86607 -16.55203 -16.33063 -16.13986 -15.79628 -15.75219 -15.39454 -14.87445 -14.63064 -14.18277 -14.08993 -13.79613 -13.60676 -13.38588 -13.30025 -12.82843 -12.73178 -12.61019 -12.40861 -12.13477 -12.10713 -12.03561 -11.75871 -11.46739 -11.45172 -10.98751 -10.73889 -9.57042 -9.20169 -8.78574 -8.44459 -6.12278 0.60347 0.75903 1.34369 1.43233 1.53192 2.18902 2.81855 3.13911 3.31472 3.50922 3.86439 3.95753 4.08138 4.18605 4.24382 4.29494 4.39177 4.41577 4.48108 4.57682 4.64450 4.77622 4.83022 4.93632 4.95380 5.02526 5.09799 5.14540 5.18401 5.24184 5.29410 5.34322 5.37569 5.46300 5.71276 5.78583 5.87484 6.06373 6.16778 6.33831 6.52811 7.00124 7.84705 8.79574 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.005343 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.965817 B = 5238.872822 C = 6410.451452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 N -0.701 5.701 4 C 0.137 3.863 5 H 0.082 0.918 6 C -0.136 4.136 7 C -0.110 4.110 8 C -0.064 4.064 9 C -0.149 4.149 10 C -0.081 4.081 11 C -0.238 4.238 12 C 0.102 3.898 13 O -0.237 6.237 14 C -0.411 4.411 15 H 0.099 0.901 16 C -0.026 4.026 17 N -0.923 5.923 18 Si 1.020 2.980 19 H -0.252 1.252 20 H -0.268 1.268 21 H -0.268 1.268 22 C -0.173 4.173 23 C -0.032 4.032 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.344 0.656 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.116 0.884 38 H 0.271 0.729 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.523 -9.636 16.294 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.072 4.072 3 N -0.332 5.332 4 C 0.028 3.972 5 H 0.100 0.900 6 C -0.175 4.175 7 C -0.148 4.148 8 C -0.100 4.100 9 C -0.150 4.150 10 C -0.099 4.099 11 C -0.257 4.257 12 C 0.052 3.948 13 O -0.144 6.144 14 C -0.488 4.488 15 H 0.116 0.884 16 C -0.222 4.222 17 N -0.562 5.562 18 Si 0.839 3.161 19 H -0.175 1.175 20 H -0.193 1.193 21 H -0.193 1.193 22 C -0.193 4.193 23 C -0.033 4.033 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.163 0.837 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.159 0.841 37 H 0.134 0.866 38 H 0.080 0.920 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.208 -9.685 15.285 18.578 hybrid contribution -0.070 0.784 -0.175 0.806 sum 4.138 -8.902 15.110 18.019 Atomic orbital electron populations 1.21765 0.94497 1.02497 1.01866 1.21963 0.95997 0.88544 1.00709 1.60473 1.05014 1.13521 1.54240 1.20267 0.87774 0.93162 0.96046 0.90012 1.22188 0.97790 1.02461 0.95102 1.21485 0.95205 0.95312 1.02840 1.20346 1.00113 0.96609 0.92982 1.19692 0.99842 0.95797 0.99716 1.21107 0.98962 0.95778 0.94015 1.21222 1.01588 1.02700 1.00238 1.19888 0.93191 0.94670 0.87018 1.83948 1.61867 1.33437 1.35134 1.21843 1.21290 0.91647 1.13981 0.88366 1.26600 0.95648 1.04385 0.95611 1.70206 1.25569 1.40141 1.20306 0.84520 0.78658 0.74357 0.78568 1.17508 1.19274 1.19317 1.20291 1.03983 0.95930 0.99102 1.19398 0.94950 0.96124 0.92834 0.93736 0.90488 0.92214 0.92005 0.93412 0.83722 0.89937 0.91451 0.89101 0.91938 0.90469 0.90129 0.84149 0.86635 0.91954 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 10.12 71.98 0.73 -2.20 16 2 C 0.06 1.21 6.22 86.30 0.54 1.75 16 3 N -0.70 -19.20 5.36 -495.99 -2.66 -21.86 16 4 C 0.14 3.73 2.45 44.06 0.11 3.83 16 5 H 0.08 2.25 7.91 -2.39 -0.02 2.23 16 6 C -0.14 -2.65 5.16 30.61 0.16 -2.49 16 7 C -0.11 -1.98 5.98 30.61 0.18 -1.80 16 8 C -0.06 -1.39 5.67 29.74 0.17 -1.23 16 9 C -0.15 -4.85 5.74 -19.81 -0.11 -4.96 16 10 C -0.08 -2.92 9.60 22.35 0.21 -2.70 16 11 C -0.24 -10.98 9.17 22.32 0.20 -10.77 16 12 C 0.10 5.41 6.64 22.51 0.15 5.56 16 13 O -0.24 -15.05 9.76 -22.71 -0.22 -15.27 16 14 C -0.41 -25.04 9.49 67.92 0.64 -24.40 16 15 H 0.10 5.52 5.22 -2.91 -0.02 5.50 16 16 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 17 N -0.92 -58.79 13.67 21.61 0.30 -58.49 16 18 Si 1.02 44.40 29.55 68.60 2.03 46.43 16 19 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 C -0.17 -8.05 9.16 22.48 0.21 -7.85 16 23 C -0.03 -1.16 5.55 -19.86 -0.11 -1.27 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 0.82 7.19 -2.38 -0.02 0.81 16 29 H 0.34 8.87 8.37 -89.69 -0.75 8.12 16 30 H 0.08 1.28 7.37 -2.39 -0.02 1.26 16 31 H 0.07 1.32 7.95 -2.38 -0.02 1.30 16 32 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 36 H 0.14 4.03 8.05 -2.91 -0.02 4.01 16 37 H 0.12 5.40 5.67 -2.91 -0.02 5.39 16 38 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.11 5.19 7.61 -2.91 -0.02 5.16 16 Total: -1.00 -73.54 314.81 3.28 -70.26 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.29 Total: 28.49 kcal Atomic # 6 Polarization: -53.11 SS G_CDS: 3.54 Total: -49.56 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -2.36 Total: -80.35 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.22 Total: -15.27 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -73.54 3.28 -70.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233604845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.943 kcal (2) G-P(sol) polarization free energy of solvation -73.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds