Wall clock time and date at job start Mon Mar 30 2020 06:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47294 * 2 1 4 4 C 1.46899 * 111.00249 * 174.97556 * 3 2 1 5 5 H 1.09003 * 109.21736 * 328.79821 * 4 3 2 6 6 C 1.52728 * 109.25047 * 88.24158 * 4 3 2 7 7 C 1.53325 * 108.40634 * 171.39402 * 6 4 3 8 8 C 1.52725 * 108.38703 * 290.15887 * 7 6 4 9 9 C 1.50662 * 110.58181 * 51.24623 * 8 7 6 10 10 C 1.38995 * 117.68639 * 162.17914 * 9 8 7 11 11 C 1.37778 * 120.64512 * 179.44472 * 10 9 8 12 12 C 1.38912 * 119.69567 * 359.95619 * 11 10 9 13 13 O 1.35754 * 120.18518 * 180.16879 * 12 11 10 14 14 C 1.34830 * 117.00224 * 354.31578 * 13 12 11 15 15 H 1.08003 * 120.00078 * 5.07662 * 14 13 12 16 16 C 1.38649 * 120.00371 * 185.08060 * 14 13 12 17 17 N 1.31563 * 119.99620 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00306 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47150 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47027 * 120.00167 * 18 16 14 21 21 H 1.48496 * 109.47343 * 240.00006 * 18 16 14 22 22 C 1.38569 * 119.62832 * 0.14963 * 12 11 10 23 23 C 1.37748 * 122.52150 * 341.86232 * 9 8 7 24 24 H 1.08998 * 109.46723 * 60.00433 * 1 2 3 25 25 H 1.09000 * 109.47123 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46973 * 300.00015 * 1 2 3 27 27 H 1.08996 * 109.47321 * 239.99569 * 2 1 3 28 28 H 1.09003 * 109.47400 * 119.99564 * 2 1 3 29 29 H 1.00896 * 110.99769 * 298.92965 * 3 2 1 30 30 H 1.08998 * 109.67513 * 51.66585 * 6 4 3 31 31 H 1.08999 * 109.67676 * 291.12775 * 6 4 3 32 32 H 1.08996 * 109.67799 * 170.43530 * 7 6 4 33 33 H 1.08994 * 109.70878 * 49.90277 * 7 6 4 34 34 H 1.09005 * 109.25539 * 290.96716 * 8 7 6 35 35 H 1.08996 * 109.22531 * 171.50792 * 8 7 6 36 36 H 1.08006 * 119.67369 * 359.41497 * 10 9 8 37 37 H 1.07997 * 120.15166 * 179.97438 * 11 10 9 38 38 H 0.97001 * 119.99501 * 180.02562 * 17 16 14 39 39 H 1.08000 * 119.75684 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4832 1.4259 0.1201 5 1 3.8189 0.5718 0.7083 6 6 4.1050 1.3537 -1.2730 7 6 5.6105 1.6142 -1.1453 8 6 5.8158 3.0821 -0.7770 9 6 4.9676 3.4536 0.4114 10 6 5.3011 4.6101 1.1067 11 6 4.5599 5.0131 2.1959 12 6 3.4679 4.2571 2.6030 13 8 2.7286 4.6468 3.6728 14 6 3.1743 5.7115 4.3697 15 1 4.0351 6.2630 4.0215 16 6 2.5275 6.0985 5.5335 17 7 1.4787 5.4269 5.9575 18 14 3.1454 7.5731 6.4994 19 1 4.3302 8.1513 5.8161 20 1 2.0726 8.5968 6.5801 21 1 3.5241 7.1440 7.8696 22 6 3.1373 3.1031 1.9108 23 6 3.8890 2.6987 0.8164 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.7106 1.8777 -0.8244 30 1 3.6547 2.1103 -1.9155 31 1 3.9385 0.3640 -1.6984 32 1 6.1016 1.4019 -2.0949 33 1 6.0288 0.9781 -0.3654 34 1 5.5391 3.7078 -1.6257 35 1 6.8656 3.2480 -0.5352 36 1 6.1499 5.1982 0.7902 37 1 4.8264 5.9128 2.7306 38 1 1.0260 5.6979 6.7715 39 1 2.2886 2.5140 2.2253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233625541.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:25 Heat of formation + Delta-G solvation = -17.543899 kcal Electronic energy + Delta-G solvation = -19474.565631 eV Core-core repulsion = 16574.868721 eV Total energy + Delta-G solvation = -2899.696910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.66971 -37.89882 -35.96898 -34.27278 -32.16253 -31.67027 -29.20865 -28.74590 -26.82700 -25.05502 -22.89534 -22.00786 -21.92145 -21.12256 -19.28895 -17.55909 -16.69272 -15.65480 -15.44005 -14.89715 -14.48634 -14.43490 -14.16318 -13.83982 -13.45942 -13.20141 -12.81487 -12.64532 -12.52325 -12.27169 -11.91900 -11.72479 -11.59505 -11.50671 -11.22162 -11.10446 -10.97182 -10.83907 -10.43005 -10.31625 -10.21421 -10.08660 -9.19785 -8.72611 -8.19950 -7.89504 -7.01034 -6.35975 -3.94144 2.27221 2.43358 3.16793 3.18354 3.23832 4.03429 4.27962 4.63927 4.87388 4.95447 5.08694 5.12854 5.17927 5.32281 5.34695 5.50400 5.56437 5.61750 5.69992 5.77906 5.83358 5.86295 5.88848 6.00920 6.04545 6.12445 6.15073 6.26946 6.35640 6.39208 6.64169 6.79140 7.03925 7.15716 7.21902 7.42644 7.45162 7.58680 7.64453 7.95104 8.09807 9.09995 9.83551 10.82536 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021346 B = 0.005405 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.402880 B = 5179.547300 C = 6388.926577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 N -0.679 5.679 4 C 0.135 3.865 5 H 0.080 0.920 6 C -0.143 4.143 7 C -0.113 4.113 8 C -0.062 4.062 9 C -0.171 4.171 10 C -0.081 4.081 11 C -0.227 4.227 12 C 0.146 3.854 13 O -0.180 6.180 14 C -0.389 4.389 15 H 0.090 0.910 16 C 0.037 3.963 17 N -0.864 5.864 18 Si 0.939 3.061 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.160 4.160 23 C -0.034 4.034 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.023 0.977 28 H 0.070 0.930 29 H 0.341 0.659 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.124 0.876 38 H 0.268 0.732 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.504 -7.881 -12.993 15.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.074 4.074 3 N -0.309 5.309 4 C 0.026 3.974 5 H 0.098 0.902 6 C -0.182 4.182 7 C -0.151 4.151 8 C -0.099 4.099 9 C -0.172 4.172 10 C -0.099 4.099 11 C -0.246 4.246 12 C 0.093 3.907 13 O -0.084 6.084 14 C -0.465 4.465 15 H 0.107 0.893 16 C -0.166 4.166 17 N -0.500 5.500 18 Si 0.764 3.236 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.179 4.179 23 C -0.035 4.035 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.159 0.841 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.078 0.922 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.995 -7.878 -12.012 14.910 hybrid contribution 0.622 0.618 -0.353 0.944 sum 4.617 -7.260 -12.364 15.063 Atomic orbital electron populations 1.21756 0.95102 1.01232 1.02668 1.21942 0.95732 0.89704 1.00034 1.60495 1.09934 1.14111 1.46343 1.20270 0.86661 0.96272 0.94243 0.90154 1.22224 0.97030 1.01003 0.97909 1.21452 0.95515 0.97237 1.00873 1.20203 0.98419 0.95325 0.95963 1.19024 0.99723 0.98158 1.00282 1.20666 0.98504 0.95618 0.95138 1.21128 0.99524 1.03110 1.00862 1.19356 0.90014 0.92596 0.88751 1.83989 1.44659 1.45106 1.34693 1.21339 1.14648 1.05226 1.05315 0.89251 1.25256 0.95993 0.99082 0.96283 1.70061 1.18602 1.38863 1.22486 0.85676 0.78683 0.79887 0.79338 1.19200 1.20238 1.20233 1.20152 1.02869 0.97054 0.97845 1.18888 0.94532 0.94948 0.95146 0.93032 0.92603 0.91456 0.95862 0.91121 0.84068 0.91565 0.92387 0.92271 0.91812 0.92274 0.92097 0.87826 0.85791 0.92239 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.21 37.16 0.38 -1.24 16 2 C 0.06 0.64 6.25 -3.83 -0.02 0.62 16 3 N -0.68 -9.49 5.31 -108.13 -0.57 -10.07 16 4 C 0.13 1.96 2.49 -69.03 -0.17 1.79 16 5 H 0.08 1.17 7.64 -51.93 -0.40 0.77 16 6 C -0.14 -1.69 5.30 -26.70 -0.14 -1.83 16 7 C -0.11 -1.31 5.98 -26.70 -0.16 -1.47 16 8 C -0.06 -0.84 5.67 -28.04 -0.16 -1.00 16 9 C -0.17 -3.00 5.74 -104.54 -0.60 -3.60 16 10 C -0.08 -1.54 9.60 -39.47 -0.38 -1.92 16 11 C -0.23 -5.11 9.17 -39.50 -0.36 -5.47 16 12 C 0.15 3.65 6.64 -39.21 -0.26 3.39 16 13 O -0.18 -5.32 9.76 0.04 0.00 -5.32 16 14 C -0.39 -11.16 9.49 30.88 0.29 -10.87 16 15 H 0.09 2.39 5.22 -52.48 -0.27 2.11 16 16 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 17 N -0.86 -25.96 13.67 55.48 0.76 -25.20 16 18 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 C -0.16 -3.54 9.16 -39.26 -0.36 -3.90 16 23 C -0.03 -0.63 5.55 -104.62 -0.58 -1.21 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.02 0.24 8.02 -51.93 -0.42 -0.18 16 28 H 0.07 0.85 7.92 -51.93 -0.41 0.44 16 29 H 0.34 4.45 8.34 -39.29 -0.33 4.12 16 30 H 0.07 0.79 7.90 -51.93 -0.41 0.38 16 31 H 0.06 0.60 8.02 -51.93 -0.42 0.18 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.77 8.12 -51.93 -0.42 0.34 16 36 H 0.10 1.69 8.05 -52.48 -0.42 1.27 16 37 H 0.12 2.80 5.66 -52.49 -0.30 2.50 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.12 2.82 7.60 -52.49 -0.40 2.42 16 LS Contribution 315.98 15.07 4.76 4.76 Total: -1.00 -30.87 315.98 -8.56 -39.43 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.86 Total: 6.15 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -2.62 Total: -25.75 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.18 Total: -35.27 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: 0.00 Total: -5.32 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.87 -8.56 -39.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233625541.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.887 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds