Wall clock time and date at job start Mon Mar 30 2020 06:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42905 * 114.00158 * 2 1 4 4 C 1.53779 * 113.61118 * 150.00256 * 3 2 1 5 5 C 1.53780 * 87.08367 * 89.20406 * 4 3 2 6 6 N 1.46894 * 113.61586 * 139.97950 * 5 4 3 7 7 C 1.46896 * 111.00141 * 155.00385 * 6 5 4 8 8 H 1.08997 * 109.46915 * 324.13704 * 7 6 5 9 9 C 1.50702 * 109.47236 * 84.13467 * 7 6 5 10 10 H 1.08002 * 120.00070 * 60.38442 * 9 7 6 11 11 C 1.37878 * 120.00092 * 240.38109 * 9 7 6 12 12 N 1.31511 * 120.00234 * 174.96401 * 11 9 7 13 13 Si 1.86800 * 119.99898 * 354.95973 * 11 9 7 14 14 H 1.48501 * 109.47000 * 84.75096 * 13 11 9 15 15 H 1.48500 * 109.47078 * 204.74935 * 13 11 9 16 16 H 1.48501 * 109.47632 * 324.75374 * 13 11 9 17 17 C 1.50702 * 109.47416 * 204.13519 * 7 6 5 18 18 C 1.38230 * 119.99867 * 313.58394 * 17 7 6 19 19 C 1.38240 * 120.00020 * 180.02562 * 18 17 7 20 20 C 1.38232 * 119.99715 * 0.07640 * 19 18 17 21 21 C 1.38232 * 120.00226 * 359.97438 * 20 19 18 22 22 C 1.38232 * 119.99765 * 133.71173 * 17 7 6 23 23 C 1.53773 * 113.69362 * 247.54005 * 3 2 1 24 24 H 1.09002 * 109.47292 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47003 * 299.99623 * 1 2 3 26 26 H 1.09000 * 109.47580 * 59.99035 * 1 2 3 27 27 H 1.08993 * 112.84622 * 18.81074 * 3 2 1 28 28 H 1.09002 * 113.61829 * 334.65523 * 4 3 2 29 29 H 1.09003 * 113.61576 * 203.75144 * 4 3 2 30 30 H 1.08999 * 113.61319 * 270.80377 * 5 4 3 31 31 H 1.00909 * 110.99644 * 278.95467 * 6 5 4 32 32 H 0.96999 * 120.00630 * 180.02562 * 12 11 9 33 33 H 1.08000 * 120.00445 * 0.11010 * 18 17 7 34 34 H 1.07996 * 120.00095 * 180.34417 * 19 18 17 35 35 H 1.08003 * 120.00064 * 179.97438 * 20 19 18 36 36 H 1.08001 * 120.00137 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.00606 * 359.97438 * 22 17 7 38 38 H 1.09000 * 113.61702 * 156.32751 * 23 3 2 39 39 H 1.08999 * 113.61907 * 25.42101 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3755 1.3718 0.7045 5 6 4.0063 1.0352 -0.6571 6 7 5.2393 1.7835 -0.9355 7 6 6.0929 1.0572 -1.8850 8 1 6.0138 -0.0139 -1.6988 9 6 5.6463 1.3566 -3.2928 10 1 5.6621 2.3722 -3.6598 11 6 5.2175 0.3341 -4.1123 12 7 4.7349 0.6057 -5.3051 13 14 5.3223 -1.4372 -3.5283 14 1 4.1197 -1.7641 -2.7209 15 1 5.3907 -2.3426 -4.7034 16 1 6.5398 -1.6130 -2.6963 17 6 7.5246 1.4933 -1.7087 18 6 7.8309 2.8379 -1.6147 19 6 9.1443 3.2380 -1.4535 20 6 10.1514 2.2935 -1.3880 21 6 9.8452 0.9488 -1.4831 22 6 8.5318 0.5487 -1.6437 23 6 2.7530 1.6512 -1.3013 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 1.3138 2.0788 0.3239 28 1 3.5176 0.5947 1.4555 29 1 3.6305 2.3666 1.0698 30 1 4.1105 -0.0347 -0.8374 31 1 5.0307 2.7113 -1.2732 32 1 4.4329 -0.1136 -5.8815 33 1 7.0441 3.5759 -1.6657 34 1 9.3830 4.2883 -1.3745 35 1 11.1776 2.6060 -1.2625 36 1 10.6322 0.2109 -1.4324 37 1 8.2927 -0.5018 -1.7189 38 1 2.8378 2.7223 -1.4844 39 1 2.3925 1.0996 -2.1696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234734563.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:16 Heat of formation + Delta-G solvation = 3.771543 kcal Electronic energy + Delta-G solvation = -19725.312218 eV Core-core repulsion = 16826.539615 eV Total energy + Delta-G solvation = -2898.772603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.27284 -38.43608 -36.17403 -34.08703 -31.94314 -30.20275 -29.73010 -26.80835 -26.22698 -25.13433 -23.35347 -22.38046 -21.64736 -19.81028 -19.21455 -17.11433 -16.35181 -16.10876 -15.28079 -14.95510 -14.80988 -14.58288 -14.31816 -13.69485 -13.50055 -12.80616 -12.67900 -12.53885 -12.38834 -12.04057 -11.93051 -11.74250 -11.44662 -11.33345 -10.96554 -10.76199 -10.69228 -10.42719 -10.05684 -9.83310 -9.73627 -9.38995 -9.19282 -8.67900 -8.18626 -7.89590 -7.28930 -6.22403 -4.23509 2.14507 2.21275 3.22068 3.28117 3.30627 3.90148 4.29203 4.57575 4.98985 5.07796 5.13463 5.21695 5.36234 5.48022 5.49047 5.55954 5.58320 5.67380 5.69241 5.76598 5.85335 6.11324 6.19080 6.25254 6.30362 6.42104 6.43210 6.61646 6.70402 6.71538 6.78123 6.88105 7.17575 7.26556 7.42093 7.47670 7.58242 7.79865 8.03003 8.29399 8.52386 8.81874 9.40440 10.89975 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017961 B = 0.007026 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.592172 B = 3983.959098 C = 4848.046717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.056 3.944 4 C -0.132 4.132 5 C 0.093 3.907 6 N -0.676 5.676 7 C 0.204 3.796 8 H 0.050 0.950 9 C -0.531 4.531 10 H 0.077 0.923 11 C 0.083 3.917 12 N -0.888 5.888 13 Si 0.865 3.135 14 H -0.269 1.269 15 H -0.287 1.287 16 H -0.263 1.263 17 C -0.015 4.015 18 C -0.104 4.104 19 C -0.126 4.126 20 C -0.151 4.151 21 C -0.123 4.123 22 C -0.133 4.133 23 C -0.171 4.171 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.335 0.665 32 H 0.266 0.734 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.679 1.610 10.089 10.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.003 4.003 4 C -0.171 4.171 5 C -0.018 4.018 6 N -0.304 5.304 7 C 0.096 3.904 8 H 0.068 0.932 9 C -0.570 4.570 10 H 0.095 0.905 11 C -0.121 4.121 12 N -0.525 5.525 13 Si 0.692 3.308 14 H -0.194 1.194 15 H -0.213 1.213 16 H -0.188 1.188 17 C -0.017 4.017 18 C -0.123 4.123 19 C -0.144 4.144 20 C -0.170 4.170 21 C -0.141 4.141 22 C -0.152 4.152 23 C -0.210 4.210 24 H 0.100 0.900 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.154 0.846 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.304 1.118 10.465 10.605 hybrid contribution -0.671 -0.676 -0.923 1.327 sum -1.975 0.442 9.542 9.754 Atomic orbital electron populations 1.22747 0.81642 1.02328 0.99671 1.87896 1.19103 1.27187 1.94665 1.23126 0.94334 0.84333 0.98485 1.23396 0.93244 1.02228 0.98190 1.22629 0.87896 0.97935 0.93371 1.60930 1.15444 1.05708 1.48349 1.18716 0.86199 0.94212 0.91244 0.93157 1.21465 1.42993 0.96374 0.96190 0.90512 1.25036 0.93782 0.98688 0.94635 1.69887 1.40827 1.32897 1.08869 0.87063 0.79548 0.85498 0.78642 1.19438 1.21323 1.18823 1.20305 0.96765 0.92911 0.91670 1.20821 0.95480 0.95883 1.00086 1.21012 0.93426 0.98511 1.01439 1.20835 0.98308 0.93359 1.04473 1.20934 0.96082 0.95661 1.01447 1.21007 0.92761 0.99253 1.02156 1.24019 0.98376 1.01338 0.97308 0.90002 0.94370 0.94114 0.91514 0.91386 0.89011 0.89588 0.84639 0.92450 0.86781 0.87299 0.87455 0.87331 0.87164 0.89496 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.85 101.05 1.10 1.50 16 2 O -0.37 -6.13 10.64 -35.23 -0.37 -6.50 16 3 C 0.06 0.86 4.37 -25.92 -0.11 0.75 16 4 C -0.13 -2.08 7.71 -25.92 -0.20 -2.28 16 5 C 0.09 1.79 3.97 -66.90 -0.27 1.52 16 6 N -0.68 -13.54 5.97 -101.33 -0.61 -14.15 16 7 C 0.20 4.66 2.13 -70.02 -0.15 4.51 16 8 H 0.05 1.21 3.83 -51.93 -0.20 1.01 16 9 C -0.53 -14.04 8.68 -34.44 -0.30 -14.34 16 10 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 11 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 12 N -0.89 -26.15 13.96 55.43 0.77 -25.37 16 13 Si 0.87 21.13 26.86 -169.99 -4.57 16.57 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 16 H -0.26 -6.17 6.29 56.52 0.36 -5.81 16 17 C -0.02 -0.33 4.93 -104.63 -0.52 -0.85 16 18 C -0.10 -2.04 9.26 -39.58 -0.37 -2.41 16 19 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 20 C -0.15 -2.52 10.05 -39.59 -0.40 -2.92 16 21 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 22 C -0.13 -2.71 9.67 -39.58 -0.38 -3.10 16 23 C -0.17 -3.09 7.53 -25.92 -0.20 -3.29 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.09 1.87 7.33 -51.93 -0.38 1.49 16 31 H 0.34 6.55 7.36 -39.29 -0.29 6.26 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.11 2.14 7.45 -52.49 -0.39 1.75 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.11 2.23 7.59 -52.49 -0.40 1.83 16 38 H 0.09 1.47 7.82 -51.93 -0.41 1.06 16 39 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 321.31 15.07 4.84 4.84 Total: -1.00 -29.33 321.31 -8.49 -37.83 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.88 Total: 10.61 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -2.68 Total: -23.83 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.17 Total: -39.52 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.37 Total: -6.50 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.57 Total: 16.57 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.33 -8.49 -37.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234734563.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.599 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds