Wall clock time and date at job start Mon Mar 30 2020 06:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42905 * 114.00158 * 2 1 4 4 C 1.53779 * 113.61118 * 150.00256 * 3 2 1 5 5 C 1.53780 * 87.08367 * 89.20406 * 4 3 2 6 6 N 1.46894 * 113.61586 * 139.97950 * 5 4 3 7 7 C 1.46896 * 111.00141 * 155.00385 * 6 5 4 8 8 H 1.08997 * 109.46915 * 324.13704 * 7 6 5 9 9 C 1.50702 * 109.47236 * 84.13467 * 7 6 5 10 10 H 1.08002 * 120.00070 * 60.38442 * 9 7 6 11 11 C 1.37878 * 120.00092 * 240.38109 * 9 7 6 12 12 N 1.31511 * 120.00234 * 174.96401 * 11 9 7 13 13 Si 1.86800 * 119.99898 * 354.95973 * 11 9 7 14 14 H 1.48501 * 109.47000 * 84.75096 * 13 11 9 15 15 H 1.48500 * 109.47078 * 204.74935 * 13 11 9 16 16 H 1.48501 * 109.47632 * 324.75374 * 13 11 9 17 17 C 1.50702 * 109.47416 * 204.13519 * 7 6 5 18 18 C 1.38230 * 119.99867 * 313.58394 * 17 7 6 19 19 C 1.38240 * 120.00020 * 180.02562 * 18 17 7 20 20 C 1.38232 * 119.99715 * 0.07640 * 19 18 17 21 21 C 1.38232 * 120.00226 * 359.97438 * 20 19 18 22 22 C 1.38232 * 119.99765 * 133.71173 * 17 7 6 23 23 C 1.53773 * 113.69362 * 247.54005 * 3 2 1 24 24 H 1.09002 * 109.47292 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47003 * 299.99623 * 1 2 3 26 26 H 1.09000 * 109.47580 * 59.99035 * 1 2 3 27 27 H 1.08993 * 112.84622 * 18.81074 * 3 2 1 28 28 H 1.09002 * 113.61829 * 334.65523 * 4 3 2 29 29 H 1.09003 * 113.61576 * 203.75144 * 4 3 2 30 30 H 1.08999 * 113.61319 * 270.80377 * 5 4 3 31 31 H 1.00909 * 110.99644 * 278.95467 * 6 5 4 32 32 H 0.96999 * 120.00630 * 180.02562 * 12 11 9 33 33 H 1.08000 * 120.00445 * 0.11010 * 18 17 7 34 34 H 1.07996 * 120.00095 * 180.34417 * 19 18 17 35 35 H 1.08003 * 120.00064 * 179.97438 * 20 19 18 36 36 H 1.08001 * 120.00137 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.00606 * 359.97438 * 22 17 7 38 38 H 1.09000 * 113.61702 * 156.32751 * 23 3 2 39 39 H 1.08999 * 113.61907 * 25.42101 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3755 1.3718 0.7045 5 6 4.0063 1.0352 -0.6571 6 7 5.2393 1.7835 -0.9355 7 6 6.0929 1.0572 -1.8850 8 1 6.0138 -0.0139 -1.6988 9 6 5.6463 1.3566 -3.2928 10 1 5.6621 2.3722 -3.6598 11 6 5.2175 0.3341 -4.1123 12 7 4.7349 0.6057 -5.3051 13 14 5.3223 -1.4372 -3.5283 14 1 4.1197 -1.7641 -2.7209 15 1 5.3907 -2.3426 -4.7034 16 1 6.5398 -1.6130 -2.6963 17 6 7.5246 1.4933 -1.7087 18 6 7.8309 2.8379 -1.6147 19 6 9.1443 3.2380 -1.4535 20 6 10.1514 2.2935 -1.3880 21 6 9.8452 0.9488 -1.4831 22 6 8.5318 0.5487 -1.6437 23 6 2.7530 1.6512 -1.3013 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 1.3138 2.0788 0.3239 28 1 3.5176 0.5947 1.4555 29 1 3.6305 2.3666 1.0698 30 1 4.1105 -0.0347 -0.8374 31 1 5.0307 2.7113 -1.2732 32 1 4.4329 -0.1136 -5.8815 33 1 7.0441 3.5759 -1.6657 34 1 9.3830 4.2883 -1.3745 35 1 11.1776 2.6060 -1.2625 36 1 10.6322 0.2109 -1.4324 37 1 8.2927 -0.5018 -1.7189 38 1 2.8378 2.7223 -1.4844 39 1 2.3925 1.0996 -2.1696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234734563.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:15 Heat of formation + Delta-G solvation = -15.035323 kcal Electronic energy + Delta-G solvation = -19726.127745 eV Core-core repulsion = 16826.539615 eV Total energy + Delta-G solvation = -2899.588130 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.67258 -39.86629 -37.55743 -35.73165 -33.93532 -31.64180 -31.19023 -28.49380 -27.46072 -26.50690 -24.96829 -23.92430 -23.07910 -21.43992 -20.64050 -19.12572 -17.72667 -17.47087 -16.76152 -16.62422 -16.04185 -16.01517 -15.84538 -15.09137 -15.02198 -14.74347 -14.10620 -13.98828 -13.91578 -13.64700 -13.38509 -13.26085 -12.98654 -12.85193 -12.60268 -12.20374 -12.10465 -11.95423 -11.83608 -11.50994 -11.30220 -11.15077 -10.74412 -10.42994 -9.62319 -9.40551 -8.96574 -8.38800 -6.40464 0.69616 0.76031 1.22911 1.25104 1.30993 2.22441 2.77914 2.94350 3.18798 3.55441 3.77312 3.80152 4.05966 4.17668 4.24564 4.31494 4.36210 4.42218 4.53398 4.55436 4.60223 4.62806 4.80190 4.86340 4.91820 4.92466 4.96618 5.16616 5.20737 5.27495 5.32145 5.40798 5.45650 5.76558 5.81126 5.99537 6.08235 6.32834 6.34846 6.45762 6.64771 6.80538 7.26192 8.77179 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017961 B = 0.007026 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.592172 B = 3983.959098 C = 4848.046717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.069 3.931 4 C -0.114 4.114 5 C 0.075 3.925 6 N -0.662 5.662 7 C 0.211 3.789 8 H 0.036 0.964 9 C -0.518 4.518 10 H 0.042 0.958 11 C 0.033 3.967 12 N -0.935 5.935 13 Si 0.916 3.084 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.249 1.249 17 C -0.048 4.048 18 C -0.119 4.119 19 C -0.124 4.124 20 C -0.143 4.143 21 C -0.122 4.122 22 C -0.156 4.156 23 C -0.175 4.175 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.055 0.945 31 H 0.337 0.663 32 H 0.265 0.735 33 H 0.112 0.888 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.497 2.282 12.439 12.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C 0.011 3.989 4 C -0.152 4.152 5 C -0.036 4.036 6 N -0.291 5.291 7 C 0.103 3.897 8 H 0.054 0.946 9 C -0.558 4.558 10 H 0.060 0.940 11 C -0.167 4.167 12 N -0.575 5.575 13 Si 0.741 3.259 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.173 1.173 17 C -0.050 4.050 18 C -0.138 4.138 19 C -0.141 4.141 20 C -0.160 4.160 21 C -0.140 4.140 22 C -0.175 4.175 23 C -0.215 4.215 24 H 0.112 0.888 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.120 0.880 28 H 0.091 0.909 29 H 0.132 0.868 30 H 0.073 0.927 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.130 0.870 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.157 0.843 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.121 1.789 12.842 12.967 hybrid contribution -0.989 -0.792 -1.630 2.064 sum -1.111 0.997 11.212 11.311 Atomic orbital electron populations 1.22993 0.79465 1.03689 1.00933 1.87860 1.21638 1.27870 1.94659 1.23060 0.94967 0.85013 0.95874 1.23296 0.92434 1.03485 0.95963 1.22763 0.87980 0.96222 0.96649 1.60976 1.15735 1.05513 1.46829 1.18536 0.88063 0.93750 0.89399 0.94587 1.21623 1.41757 0.94523 0.97852 0.94001 1.25679 0.94004 1.02228 0.94757 1.70009 1.43256 1.33842 1.10351 0.86239 0.79917 0.81469 0.78233 1.19660 1.21190 1.17303 1.20252 0.95864 0.94320 0.94516 1.20935 0.97016 0.95022 1.00791 1.21402 0.92349 1.00565 0.99820 1.21331 1.00091 0.92625 1.02004 1.21297 0.95468 0.97197 1.00040 1.21131 0.94104 0.98747 1.03519 1.24038 0.98746 1.01265 0.97402 0.88792 0.91789 0.94054 0.88019 0.90941 0.86754 0.92715 0.84463 0.92597 0.86979 0.84048 0.83465 0.84279 0.88010 0.88509 0.94639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.85 113.37 1.23 1.80 16 2 O -0.40 -12.88 10.64 -148.98 -1.58 -14.46 16 3 C 0.07 2.04 4.37 31.12 0.14 2.17 16 4 C -0.11 -3.38 7.71 31.12 0.24 -3.14 16 5 C 0.07 2.92 3.97 45.45 0.18 3.10 16 6 N -0.66 -26.93 5.97 -474.49 -2.83 -29.77 16 7 C 0.21 9.91 2.13 43.43 0.09 10.00 16 8 H 0.04 1.78 3.83 -2.39 -0.01 1.77 16 9 C -0.52 -28.62 8.68 25.60 0.22 -28.40 16 10 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 11 C 0.03 1.90 5.47 84.66 0.46 2.37 16 12 N -0.93 -57.64 13.96 21.45 0.30 -57.34 16 13 Si 0.92 45.30 26.86 68.60 1.84 47.14 16 14 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16 15 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 16 H -0.25 -11.60 6.29 99.48 0.63 -10.97 16 17 C -0.05 -2.10 4.93 -19.87 -0.10 -2.19 16 18 C -0.12 -4.57 9.26 22.27 0.21 -4.37 16 19 C -0.12 -3.89 10.05 22.27 0.22 -3.66 16 20 C -0.14 -4.16 10.05 22.27 0.22 -3.93 16 21 C -0.12 -3.95 10.05 22.27 0.22 -3.73 16 22 C -0.16 -6.26 9.67 22.27 0.22 -6.04 16 23 C -0.18 -6.43 7.53 31.12 0.23 -6.20 16 24 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 2.31 7.87 -2.39 -0.02 2.29 16 28 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.05 2.47 7.33 -2.39 -0.02 2.46 16 31 H 0.34 13.41 7.36 -89.69 -0.66 12.74 16 32 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.11 4.21 7.45 -2.91 -0.02 4.19 16 34 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 35 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.10 4.12 7.59 -2.91 -0.02 4.10 16 38 H 0.10 3.29 7.82 -2.39 -0.02 3.27 16 39 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -66.78 321.31 1.81 -64.97 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.29 Total: 31.68 kcal Atomic # 6 Polarization: -46.02 SS G_CDS: 3.79 Total: -42.23 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -2.54 Total: -87.10 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -1.58 Total: -14.46 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.84 Total: 47.14 kcal Total: -66.78 1.81 -64.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234734563.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.937 kcal (2) G-P(sol) polarization free energy of solvation -66.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds