Wall clock time and date at job start Mon Mar 30 2020 06:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99589 * 2 1 4 4 H 1.08991 * 110.78746 * 328.20688 * 3 2 1 5 5 C 1.54594 * 110.72118 * 91.45664 * 3 2 1 6 6 C 1.53997 * 105.14023 * 140.30998 * 5 3 2 7 7 N 1.47893 * 107.05710 * 1.22564 * 6 5 3 8 8 C 1.46899 * 111.00481 * 214.15051 * 7 6 5 9 9 H 1.09004 * 109.46420 * 54.59497 * 8 7 6 10 10 C 1.50692 * 109.47438 * 174.59465 * 8 7 6 11 11 H 1.08000 * 119.99954 * 59.09757 * 10 8 7 12 12 C 1.37882 * 120.00177 * 239.09343 * 10 8 7 13 13 N 1.31510 * 119.99979 * 174.31632 * 12 10 8 14 14 Si 1.86799 * 120.00026 * 354.31919 * 12 10 8 15 15 H 1.48503 * 109.47077 * 84.68437 * 14 12 10 16 16 H 1.48490 * 109.47201 * 204.68689 * 14 12 10 17 17 H 1.48499 * 109.47062 * 324.68773 * 14 12 10 18 18 C 1.50696 * 109.47076 * 294.60378 * 8 7 6 19 19 C 1.38237 * 120.00485 * 134.65740 * 18 8 7 20 20 C 1.38227 * 120.00439 * 179.97438 * 19 18 8 21 21 C 1.38242 * 119.99845 * 0.28003 * 20 19 18 22 22 C 1.38237 * 119.99737 * 359.50725 * 21 20 19 23 23 C 1.38228 * 119.99950 * 0.44406 * 22 21 20 24 24 C 1.48529 * 105.82306 * 334.66946 * 7 6 5 25 25 H 1.08999 * 109.47442 * 59.99302 * 1 2 3 26 26 H 1.09001 * 109.47335 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47567 * 299.99859 * 1 2 3 28 28 H 1.08999 * 110.31207 * 21.39506 * 5 3 2 29 29 H 1.09002 * 110.39792 * 259.27172 * 5 3 2 30 30 H 1.09002 * 109.91772 * 241.86897 * 6 5 3 31 31 H 1.09001 * 109.91259 * 120.57787 * 6 5 3 32 32 H 0.97002 * 119.99920 * 180.02562 * 13 12 10 33 33 H 1.08001 * 119.99450 * 359.97438 * 19 18 8 34 34 H 1.08000 * 120.00454 * 179.97438 * 20 19 18 35 35 H 1.07999 * 119.99579 * 179.72440 * 21 20 19 36 36 H 1.07998 * 119.99462 * 180.27869 * 22 21 20 37 37 H 1.07998 * 119.99745 * 179.82644 * 23 22 21 38 38 H 1.09000 * 110.67437 * 157.64378 * 24 7 6 39 39 H 1.09007 * 110.66584 * 280.77365 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3762 2.0111 -0.5368 5 6 2.2662 1.7903 1.4455 6 6 3.6255 2.5121 1.3928 7 7 4.0894 2.4615 -0.0106 8 6 5.5523 2.3460 -0.0777 9 1 5.8761 1.4862 0.5089 10 6 5.9766 2.1640 -1.5121 11 1 5.7281 2.9143 -2.2481 12 6 6.6821 1.0396 -1.8851 13 7 6.9554 0.8254 -3.1535 14 14 7.2498 -0.1796 -0.5886 15 1 6.1511 -1.1334 -0.2912 16 1 8.4299 -0.9258 -1.0938 17 1 7.6195 0.5514 0.6501 18 6 6.1811 3.5980 0.4773 19 6 7.2422 3.5066 1.3585 20 6 7.8193 4.6551 1.8671 21 6 7.3314 5.8951 1.4990 22 6 6.2731 5.9866 0.6145 23 6 5.6967 4.8382 0.1051 24 6 3.4334 1.2721 -0.6114 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.3152 0.9406 2.1264 29 1 1.4831 2.4807 1.7589 30 1 4.3411 2.0038 2.0391 31 1 3.5077 3.5489 1.7079 32 1 7.4514 0.0341 -3.4159 33 1 7.6204 2.5377 1.6495 34 1 8.6481 4.5836 2.5558 35 1 7.7795 6.7923 1.8999 36 1 5.8949 6.9555 0.3235 37 1 4.8681 4.9097 -0.5838 38 1 3.3882 1.3646 -1.6965 39 1 3.9544 0.3589 -0.3235 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234942311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:50 Heat of formation + Delta-G solvation = -10.221029 kcal Electronic energy + Delta-G solvation = -20069.862049 eV Core-core repulsion = 17170.482682 eV Total energy + Delta-G solvation = -2899.379367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.21087 -38.21361 -36.41122 -33.29899 -31.63757 -30.18836 -29.28600 -28.24888 -26.54691 -25.95534 -22.87591 -21.91446 -20.99455 -20.36917 -19.39250 -17.15919 -16.55842 -16.07130 -15.65889 -14.85346 -14.68750 -14.42291 -14.15852 -14.00685 -13.20767 -13.02521 -12.90059 -12.73772 -12.43621 -12.08392 -11.97195 -11.51515 -11.42845 -11.23739 -11.01766 -10.82349 -10.79198 -10.37933 -10.17441 -9.94961 -9.87997 -9.47102 -9.29960 -8.69994 -8.21569 -7.84451 -7.49669 -6.21493 -4.20666 2.10273 2.15250 3.20017 3.26559 3.28968 3.92083 4.28479 4.52699 4.88422 5.07313 5.14795 5.25825 5.36905 5.42043 5.45962 5.52832 5.59516 5.66419 5.69206 5.72650 5.98610 6.04521 6.15820 6.24283 6.25736 6.28903 6.40998 6.42260 6.60590 6.69251 6.80524 6.87839 7.13124 7.16750 7.30246 7.47440 7.48876 7.76123 7.89013 7.96750 8.48536 8.89697 9.40249 10.90497 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.008614 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.070952 B = 3249.849449 C = 4455.935575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.078 3.922 4 H 0.073 0.927 5 C -0.152 4.152 6 C 0.033 3.967 7 N -0.504 5.504 8 C 0.206 3.794 9 H 0.019 0.981 10 C -0.494 4.494 11 H 0.084 0.916 12 C 0.080 3.920 13 N -0.884 5.884 14 Si 0.865 3.135 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.265 1.265 18 C -0.029 4.029 19 C -0.134 4.134 20 C -0.125 4.125 21 C -0.148 4.148 22 C -0.129 4.129 23 C -0.094 4.094 24 C 0.067 3.933 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.267 0.733 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.094 0.906 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 3.338 9.141 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.019 3.981 4 H 0.091 0.909 5 C -0.190 4.190 6 C -0.095 4.095 7 N -0.230 5.230 8 C 0.100 3.900 9 H 0.036 0.964 10 C -0.533 4.533 11 H 0.102 0.898 12 C -0.125 4.125 13 N -0.521 5.521 14 Si 0.692 3.308 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.190 1.190 18 C -0.030 4.030 19 C -0.152 4.152 20 C -0.143 4.143 21 C -0.166 4.166 22 C -0.147 4.147 23 C -0.112 4.112 24 C -0.061 4.061 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.112 0.888 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.474 3.503 8.715 12.003 hybrid contribution 0.576 -1.234 1.090 1.744 sum -6.898 2.270 9.805 12.202 Atomic orbital electron populations 1.22714 0.81840 1.02169 0.99678 1.87929 1.19046 1.28181 1.94905 1.23227 0.95984 0.83624 0.95224 0.90929 1.22909 0.98075 1.00145 0.97900 1.22782 0.94354 0.99810 0.92552 1.65030 1.09187 1.37745 1.11063 1.18947 0.83714 0.90085 0.97284 0.96376 1.20745 1.34907 1.06674 0.90932 0.89802 1.25041 0.95265 0.97144 0.95012 1.69868 1.39242 1.27743 1.15226 0.87066 0.79174 0.81870 0.82652 1.19810 1.21130 1.19008 1.20260 0.94496 0.96222 0.91984 1.21039 0.97625 0.97937 0.98647 1.20916 0.99876 0.92801 1.00755 1.20870 0.98530 0.96815 1.00388 1.21070 0.97159 0.98077 0.98418 1.20976 0.99822 0.91340 0.99109 1.22821 0.89785 0.92767 1.00735 0.94112 0.90128 0.94499 0.91245 0.91716 0.94618 0.91122 0.92296 0.87214 0.87320 0.87424 0.87199 0.85704 0.88796 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.88 101.05 1.10 1.49 16 2 O -0.38 -6.35 10.44 -35.23 -0.37 -6.72 16 3 C 0.08 1.30 3.51 -24.87 -0.09 1.21 16 4 H 0.07 1.12 7.89 -51.93 -0.41 0.71 16 5 C -0.15 -2.33 6.69 -25.37 -0.17 -2.50 16 6 C 0.03 0.59 6.02 -2.76 -0.02 0.57 16 7 N -0.50 -10.40 4.55 -225.29 -1.03 -11.42 16 8 C 0.21 4.74 1.35 -70.02 -0.09 4.65 16 9 H 0.02 0.45 4.35 -51.93 -0.23 0.22 16 10 C -0.49 -13.28 7.92 -34.44 -0.27 -13.55 16 11 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 12 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 13 N -0.88 -26.02 13.96 55.43 0.77 -25.25 16 14 Si 0.86 21.07 26.97 -169.99 -4.59 16.49 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.26 -6.18 6.09 56.52 0.34 -5.84 16 18 C -0.03 -0.61 4.19 -104.62 -0.44 -1.05 16 19 C -0.13 -2.68 9.67 -39.59 -0.38 -3.07 16 20 C -0.13 -2.17 10.05 -39.58 -0.40 -2.56 16 21 C -0.15 -2.41 10.05 -39.58 -0.40 -2.81 16 22 C -0.13 -2.21 10.05 -39.59 -0.40 -2.60 16 23 C -0.09 -1.86 9.27 -39.59 -0.37 -2.22 16 24 C 0.07 1.37 5.43 -1.90 -0.01 1.36 16 25 H 0.04 0.44 8.11 -51.93 -0.42 0.02 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.11 2.20 7.33 -52.49 -0.38 1.81 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.12 2.49 7.89 -52.49 -0.41 2.07 16 38 H 0.09 2.07 7.95 -51.93 -0.41 1.66 16 39 H 0.05 1.03 8.02 -51.92 -0.42 0.61 16 LS Contribution 317.12 15.07 4.78 4.78 Total: -1.00 -29.10 317.12 -8.53 -37.64 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.08 Total: 3.45 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -2.03 Total: -18.96 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.25 Total: -36.67 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.37 Total: -6.72 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.59 Total: 16.49 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.10 -8.53 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234942311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.415 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds