Wall clock time and date at job start Mon Mar 30 2020 06:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99589 * 2 1 4 4 H 1.08991 * 110.78746 * 328.20688 * 3 2 1 5 5 C 1.54594 * 110.72118 * 91.45664 * 3 2 1 6 6 C 1.53997 * 105.14023 * 140.30998 * 5 3 2 7 7 N 1.47893 * 107.05710 * 1.22564 * 6 5 3 8 8 C 1.46899 * 111.00481 * 214.15051 * 7 6 5 9 9 H 1.09004 * 109.46420 * 54.59497 * 8 7 6 10 10 C 1.50692 * 109.47438 * 174.59465 * 8 7 6 11 11 H 1.08000 * 119.99954 * 59.09757 * 10 8 7 12 12 C 1.37882 * 120.00177 * 239.09343 * 10 8 7 13 13 N 1.31510 * 119.99979 * 174.31632 * 12 10 8 14 14 Si 1.86799 * 120.00026 * 354.31919 * 12 10 8 15 15 H 1.48503 * 109.47077 * 84.68437 * 14 12 10 16 16 H 1.48490 * 109.47201 * 204.68689 * 14 12 10 17 17 H 1.48499 * 109.47062 * 324.68773 * 14 12 10 18 18 C 1.50696 * 109.47076 * 294.60378 * 8 7 6 19 19 C 1.38237 * 120.00485 * 134.65740 * 18 8 7 20 20 C 1.38227 * 120.00439 * 179.97438 * 19 18 8 21 21 C 1.38242 * 119.99845 * 0.28003 * 20 19 18 22 22 C 1.38237 * 119.99737 * 359.50725 * 21 20 19 23 23 C 1.38228 * 119.99950 * 0.44406 * 22 21 20 24 24 C 1.48529 * 105.82306 * 334.66946 * 7 6 5 25 25 H 1.08999 * 109.47442 * 59.99302 * 1 2 3 26 26 H 1.09001 * 109.47335 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47567 * 299.99859 * 1 2 3 28 28 H 1.08999 * 110.31207 * 21.39506 * 5 3 2 29 29 H 1.09002 * 110.39792 * 259.27172 * 5 3 2 30 30 H 1.09002 * 109.91772 * 241.86897 * 6 5 3 31 31 H 1.09001 * 109.91259 * 120.57787 * 6 5 3 32 32 H 0.97002 * 119.99920 * 180.02562 * 13 12 10 33 33 H 1.08001 * 119.99450 * 359.97438 * 19 18 8 34 34 H 1.08000 * 120.00454 * 179.97438 * 20 19 18 35 35 H 1.07999 * 119.99579 * 179.72440 * 21 20 19 36 36 H 1.07998 * 119.99462 * 180.27869 * 22 21 20 37 37 H 1.07998 * 119.99745 * 179.82644 * 23 22 21 38 38 H 1.09000 * 110.67437 * 157.64378 * 24 7 6 39 39 H 1.09007 * 110.66584 * 280.77365 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3762 2.0111 -0.5368 5 6 2.2662 1.7903 1.4455 6 6 3.6255 2.5121 1.3928 7 7 4.0894 2.4615 -0.0106 8 6 5.5523 2.3460 -0.0777 9 1 5.8761 1.4862 0.5089 10 6 5.9766 2.1640 -1.5121 11 1 5.7281 2.9143 -2.2481 12 6 6.6821 1.0396 -1.8851 13 7 6.9554 0.8254 -3.1535 14 14 7.2498 -0.1796 -0.5886 15 1 6.1511 -1.1334 -0.2912 16 1 8.4299 -0.9258 -1.0938 17 1 7.6195 0.5514 0.6501 18 6 6.1811 3.5980 0.4773 19 6 7.2422 3.5066 1.3585 20 6 7.8193 4.6551 1.8671 21 6 7.3314 5.8951 1.4990 22 6 6.2731 5.9866 0.6145 23 6 5.6967 4.8382 0.1051 24 6 3.4334 1.2721 -0.6114 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 2.3152 0.9406 2.1264 29 1 1.4831 2.4807 1.7589 30 1 4.3411 2.0038 2.0391 31 1 3.5077 3.5489 1.7079 32 1 7.4514 0.0341 -3.4159 33 1 7.6204 2.5377 1.6495 34 1 8.6481 4.5836 2.5558 35 1 7.7795 6.7923 1.8999 36 1 5.8949 6.9555 0.3235 37 1 4.8681 4.9097 -0.5838 38 1 3.3882 1.3646 -1.6965 39 1 3.9544 0.3589 -0.3235 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234942311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:49 Heat of formation + Delta-G solvation = -28.931824 kcal Electronic energy + Delta-G solvation = -20070.673410 eV Core-core repulsion = 17170.482682 eV Total energy + Delta-G solvation = -2900.190728 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.71592 -39.58039 -37.80160 -35.14061 -33.42371 -31.61162 -30.74402 -29.63725 -28.36690 -27.08244 -24.59852 -23.36050 -22.46812 -21.78570 -21.00405 -19.17255 -17.92416 -17.47103 -17.17498 -16.50745 -16.12394 -15.76038 -15.53530 -15.35321 -14.91342 -14.63398 -14.47774 -14.22103 -14.07833 -13.72239 -13.38773 -12.99353 -12.82787 -12.79909 -12.43022 -12.41260 -12.23776 -12.02156 -11.75988 -11.58881 -11.55766 -11.30765 -10.79647 -10.52191 -9.64216 -9.35877 -9.18833 -8.37448 -6.39021 0.65968 0.71615 1.22929 1.23875 1.31711 2.22610 2.63802 2.93554 3.15724 3.53899 3.70960 3.77802 4.06870 4.16823 4.27146 4.27924 4.36378 4.44588 4.49270 4.57084 4.59976 4.66352 4.80500 4.83789 4.86293 4.87315 4.93366 4.98932 5.09020 5.17519 5.25200 5.34873 5.42694 5.73098 5.77119 5.95606 6.05789 6.11503 6.30603 6.35662 6.56674 6.68233 7.25110 8.78781 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.008614 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.070952 B = 3249.849449 C = 4455.935575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.089 3.911 4 H 0.088 0.912 5 C -0.140 4.140 6 C 0.035 3.965 7 N -0.508 5.508 8 C 0.213 3.787 9 H 0.006 0.994 10 C -0.488 4.488 11 H 0.040 0.960 12 C 0.028 3.972 13 N -0.933 5.933 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.248 1.248 18 C -0.058 4.058 19 C -0.153 4.153 20 C -0.122 4.122 21 C -0.136 4.136 22 C -0.125 4.125 23 C -0.110 4.110 24 C 0.063 3.937 25 H 0.049 0.951 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.027 0.973 31 H 0.084 0.916 32 H 0.267 0.733 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.177 4.931 12.099 15.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.031 3.969 4 H 0.106 0.894 5 C -0.178 4.178 6 C -0.093 4.093 7 N -0.234 5.234 8 C 0.107 3.893 9 H 0.023 0.977 10 C -0.526 4.526 11 H 0.059 0.941 12 C -0.171 4.171 13 N -0.573 5.573 14 Si 0.744 3.256 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.173 1.173 18 C -0.058 4.058 19 C -0.172 4.172 20 C -0.140 4.140 21 C -0.154 4.154 22 C -0.142 4.142 23 C -0.128 4.128 24 C -0.065 4.065 25 H 0.068 0.932 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -8.119 5.110 11.696 15.127 hybrid contribution 0.701 -1.595 0.169 1.750 sum -7.418 3.515 11.865 14.427 Atomic orbital electron populations 1.22985 0.79193 1.03810 1.01063 1.87887 1.21913 1.27911 1.95111 1.23028 0.93576 0.84367 0.95955 0.89420 1.22860 0.97417 1.00694 0.96847 1.22841 0.95453 1.00928 0.90109 1.64851 1.07674 1.37384 1.13460 1.18733 0.85154 0.91016 0.94439 0.97676 1.20823 1.34082 1.05226 0.92494 0.94131 1.25718 0.95733 0.99018 0.96645 1.69999 1.41282 1.28830 1.17163 0.86189 0.78686 0.79805 0.80935 1.19791 1.20693 1.17257 1.20148 0.95826 0.95817 0.94054 1.21140 0.97760 0.98981 0.99325 1.21288 1.00127 0.92144 1.00399 1.21355 0.97325 0.97929 0.98824 1.21417 0.96888 0.98304 0.97639 1.20968 1.00246 0.91976 0.99639 1.22734 0.92822 0.91577 0.99414 0.93232 0.88498 0.92525 0.90768 0.88316 0.95433 0.89767 0.92325 0.87972 0.84124 0.83320 0.84104 0.87079 0.91785 0.96430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.88 113.37 1.23 1.78 16 2 O -0.41 -13.18 10.44 -148.98 -1.56 -14.73 16 3 C 0.09 2.91 3.51 31.80 0.11 3.02 16 4 H 0.09 2.57 7.89 -2.39 -0.02 2.56 16 5 C -0.14 -3.98 6.69 31.47 0.21 -3.77 16 6 C 0.03 1.19 6.02 86.45 0.52 1.71 16 7 N -0.51 -21.47 4.55 -866.68 -3.95 -25.42 16 8 C 0.21 10.18 1.35 43.42 0.06 10.24 16 9 H 0.01 0.28 4.35 -2.38 -0.01 0.27 16 10 C -0.49 -27.77 7.92 25.60 0.20 -27.57 16 11 H 0.04 2.60 8.06 -2.91 -0.02 2.57 16 12 C 0.03 1.65 5.47 84.66 0.46 2.11 16 13 N -0.93 -57.99 13.96 21.45 0.30 -57.69 16 14 Si 0.92 45.05 26.97 68.60 1.85 46.90 16 15 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 16 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 17 H -0.25 -11.39 6.09 99.48 0.61 -10.79 16 18 C -0.06 -2.47 4.19 -19.87 -0.08 -2.55 16 19 C -0.15 -5.99 9.67 22.27 0.22 -5.77 16 20 C -0.12 -3.80 10.05 22.27 0.22 -3.57 16 21 C -0.14 -3.85 10.05 22.27 0.22 -3.62 16 22 C -0.12 -3.88 10.05 22.27 0.22 -3.66 16 23 C -0.11 -4.28 9.27 22.27 0.21 -4.07 16 24 C 0.06 2.70 5.43 86.65 0.47 3.17 16 25 H 0.05 0.97 8.11 -2.39 -0.02 0.95 16 26 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 2.06 8.07 -2.39 -0.02 2.05 16 29 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.03 0.99 7.65 -2.39 -0.02 0.97 16 31 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 33 H 0.10 4.04 7.33 -2.91 -0.02 4.02 16 34 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 36 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 37 H 0.11 4.53 7.89 -2.91 -0.02 4.50 16 38 H 0.06 3.05 7.95 -2.39 -0.02 3.03 16 39 H 0.02 0.83 8.02 -2.38 -0.02 0.81 16 Total: -1.00 -67.42 317.12 1.84 -65.58 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.91 Total: 17.93 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: 4.28 Total: -32.57 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -3.65 Total: -83.11 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.56 Total: -14.73 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.85 Total: 46.90 kcal Total: -67.42 1.84 -65.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234942311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.651 kcal (2) G-P(sol) polarization free energy of solvation -67.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds