Wall clock time and date at job start Mon Mar 30 2020 06:26:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09005 * 109.47325 * 2 1
4 4 C 1.50705 * 109.47262 * 240.00506 * 2 1 3
5 5 H 1.08004 * 119.99766 * 245.46575 * 4 2 1
6 6 C 1.37872 * 119.99811 * 65.45774 * 4 2 1
7 7 N 1.31512 * 120.00250 * 9.54746 * 6 4 2
8 8 Si 1.86803 * 119.99673 * 189.54937 * 6 4 2
9 9 H 1.48491 * 109.47393 * 84.99781 * 8 6 4
10 10 H 1.48508 * 109.46940 * 204.99729 * 8 6 4
11 11 H 1.48496 * 109.47264 * 324.99464 * 8 6 4
12 12 N 1.46896 * 109.47446 * 120.00211 * 2 1 3
13 13 C 1.46900 * 111.00053 * 275.00056 * 12 2 1
14 14 H 1.08992 * 110.54144 * 32.38342 * 13 12 2
15 15 C 1.54810 * 110.48792 * 269.76407 * 13 12 2
16 16 C 1.54999 * 102.09030 * 262.20288 * 15 13 12
17 17 O 1.44375 * 103.49451 * 322.97807 * 16 15 13
18 18 C 1.43745 * 106.97594 * 40.05790 * 17 16 15
19 19 H 1.09003 * 109.87364 * 93.06143 * 18 17 16
20 20 C 1.50696 * 109.88122 * 214.06448 * 18 17 16
21 21 C 1.38236 * 120.00047 * 38.82536 * 20 18 17
22 22 C 1.38242 * 119.99953 * 180.28371 * 21 20 18
23 23 C 1.38231 * 119.99767 * 359.46024 * 22 21 20
24 24 C 1.38233 * 120.00174 * 0.25755 * 23 22 21
25 25 C 1.38231 * 120.00165 * 218.54992 * 20 18 17
26 26 H 1.09002 * 109.46810 * 183.73775 * 1 2 3
27 27 H 1.08999 * 109.46816 * 303.73599 * 1 2 3
28 28 H 1.08995 * 109.47293 * 63.73666 * 1 2 3
29 29 H 0.97008 * 119.99733 * 179.97438 * 7 6 4
30 30 H 1.00897 * 111.00479 * 151.04196 * 12 2 1
31 31 H 1.08997 * 110.90808 * 144.00394 * 15 13 12
32 32 H 1.08996 * 110.93808 * 20.41644 * 15 13 12
33 33 H 1.09003 * 110.61338 * 204.47385 * 16 15 13
34 34 H 1.09000 * 110.61742 * 81.47945 * 16 15 13
35 35 H 1.07997 * 120.00289 * 0.02562 * 21 20 18
36 36 H 1.07997 * 119.99846 * 179.74206 * 22 21 20
37 37 H 1.08002 * 119.99562 * 180.27880 * 23 22 21
38 38 H 1.07997 * 119.99903 * 180.02562 * 24 23 22
39 39 H 1.08002 * 119.99802 * 359.97438 * 25 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7103 -1.2306
5 1 2.5786 -1.6370 -1.1339
6 6 1.7946 -0.1772 -2.4796
7 7 1.2990 1.0357 -2.5934
8 14 2.1763 -1.1777 -4.0102
9 1 1.0246 -2.0608 -4.3244
10 1 2.4230 -0.2608 -5.1521
11 1 3.3849 -2.0067 -3.7711
12 7 2.0197 -0.6925 1.1993
13 6 2.0826 0.2225 2.3468
14 1 1.2919 0.9700 2.2836
15 6 3.4698 0.9059 2.4196
16 6 4.2070 0.0332 3.4672
17 8 3.1735 -0.2934 4.4209
18 6 1.9783 -0.5624 3.6689
19 1 1.9021 -1.6302 3.4636
20 6 0.7707 -0.1023 4.4441
21 6 0.8218 1.0732 5.1697
22 6 -0.2841 1.4923 5.8856
23 6 -1.4447 0.7416 5.8668
24 6 -1.4977 -0.4309 5.1365
25 6 -0.3900 -0.8527 4.4250
26 1 -0.3633 -1.0255 0.0670
27 1 -0.3633 0.5707 0.8546
28 1 -0.3633 0.4547 -0.9215
29 1 1.1321 1.4109 -3.4723
30 1 2.9173 -1.1206 1.0286
31 1 3.3785 1.9354 2.7659
32 1 3.9750 0.8654 1.4547
33 1 5.0054 0.6004 3.9456
34 1 4.6016 -0.8711 3.0041
35 1 1.7270 1.6621 5.1808
36 1 -0.2428 2.4085 6.4558
37 1 -2.3101 1.0713 6.4224
38 1 -2.4045 -1.0172 5.1215
39 1 -0.4315 -1.7686 3.8542
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000245421727.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:26:17
Heat of formation + Delta-G solvation = -24.173866 kcal
Electronic energy + Delta-G solvation = -19779.360138 eV
Core-core repulsion = 16879.375731 eV
Total energy + Delta-G solvation = -2899.984407 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.94945 -38.25741 -35.55947 -32.74958 -31.83414 -30.70571 -30.45416 -28.19529
-26.43587 -25.09405 -23.02968 -22.25009 -21.48818 -20.36862 -19.64839 -17.11085
-16.60836 -15.71703 -15.62730 -15.21502 -14.84587 -14.53981 -13.89484 -13.69153
-13.53472 -13.17972 -12.83560 -12.81522 -12.57524 -11.91804 -11.64453 -11.56893
-11.20550 -11.01665 -10.86220 -10.82489 -10.73306 -10.45825 -10.35555 -10.26893
-9.89988 -9.52123 -8.94543 -8.73884 -8.58731 -8.43080 -7.37413 -6.10305
-4.12917 1.49968 1.58576 3.27810 3.34354 3.36548 3.86381 4.21118
4.37714 4.82199 4.93281 5.09435 5.11223 5.23405 5.24644 5.29679
5.33791 5.49278 5.57673 5.69156 5.72086 5.84494 5.93238 6.11404
6.14613 6.23491 6.31228 6.40808 6.63657 6.65453 6.77805 6.80658
7.04464 7.07455 7.15629 7.18184 7.39418 7.73843 7.79321 8.10922
8.27258 8.59523 8.97395 9.52418 10.98773
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.024501 B = 0.005320 C = 0.004737
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1142.517985 B = 5261.500585 C = 5908.907612
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C 0.212 3.788
3 H 0.010 0.990
4 C -0.523 4.523
5 H 0.060 0.940
6 C 0.066 3.934
7 N -0.888 5.888
8 Si 0.893 3.107
9 H -0.279 1.279
10 H -0.288 1.288
11 H -0.275 1.275
12 N -0.678 5.678
13 C 0.070 3.930
14 H 0.086 0.914
15 C -0.185 4.185
16 C 0.049 3.951
17 O -0.376 6.376
18 C 0.120 3.880
19 H 0.087 0.913
20 C -0.072 4.072
21 C -0.099 4.099
22 C -0.127 4.127
23 C -0.126 4.126
24 C -0.123 4.123
25 C -0.102 4.102
26 H 0.034 0.966
27 H 0.008 0.992
28 H 0.063 0.937
29 H 0.262 0.738
30 H 0.334 0.666
31 H 0.071 0.929
32 H 0.086 0.914
33 H 0.087 0.913
34 H 0.061 0.939
35 H 0.122 0.878
36 H 0.118 0.882
37 H 0.117 0.883
38 H 0.120 0.880
39 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.420 -0.073 14.127 14.134
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.105 3.895
3 H 0.028 0.972
4 C -0.561 4.561
5 H 0.078 0.922
6 C -0.137 4.137
7 N -0.526 5.526
8 Si 0.721 3.279
9 H -0.205 1.205
10 H -0.214 1.214
11 H -0.200 1.200
12 N -0.308 5.308
13 C -0.042 4.042
14 H 0.104 0.896
15 C -0.224 4.224
16 C -0.027 4.027
17 O -0.295 6.295
18 C 0.062 3.938
19 H 0.104 0.896
20 C -0.073 4.073
21 C -0.117 4.117
22 C -0.145 4.145
23 C -0.144 4.144
24 C -0.141 4.141
25 C -0.120 4.120
26 H 0.053 0.947
27 H 0.027 0.973
28 H 0.081 0.919
29 H 0.071 0.929
30 H 0.152 0.848
31 H 0.090 0.910
32 H 0.104 0.896
33 H 0.105 0.895
34 H 0.079 0.921
35 H 0.140 0.860
36 H 0.136 0.864
37 H 0.135 0.865
38 H 0.138 0.862
39 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -1.087 -0.195 14.359 14.401
hybrid contribution 0.857 0.163 -1.435 1.680
sum -0.229 -0.032 12.923 12.925
Atomic orbital electron populations
1.21650 0.98217 0.98845 0.98989 1.19110 0.92105 0.93004 0.85329
0.97199 1.21193 1.36166 1.08217 0.90567 0.92190 1.24909 0.95157
0.94590 0.99050 1.69972 1.44739 1.13949 1.23894 0.86598 0.78767
0.80054 0.82483 1.20480 1.21382 1.19965 1.60729 1.32147 1.32081
1.05885 1.22862 0.95951 0.93870 0.91515 0.89550 1.23845 0.98061
1.00011 1.00530 1.23490 0.91143 0.98008 0.90109 1.88843 1.19454
1.90304 1.30918 1.21771 0.82809 0.99782 0.89425 0.89572 1.19813
0.94753 0.95105 0.97586 1.20977 0.98305 0.95996 0.96454 1.21099
0.93477 0.99856 1.00078 1.21097 0.97879 0.95527 0.99940 1.21079
0.98297 0.96944 0.97800 1.21024 0.92582 0.99940 0.98501 0.94675
0.97290 0.91857 0.92855 0.84803 0.90977 0.89575 0.89489 0.92119
0.86025 0.86414 0.86504 0.86201 0.85674
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.87 9.26 37.16 0.34 -2.53 16
2 C 0.21 5.19 2.33 -68.86 -0.16 5.02 16
3 H 0.01 0.28 7.80 -51.93 -0.41 -0.13 16
4 C -0.52 -13.95 8.48 -34.44 -0.29 -14.25 16
5 H 0.06 1.58 7.69 -52.48 -0.40 1.18 16
6 C 0.07 1.78 5.17 -17.82 -0.09 1.69 16
7 N -0.89 -25.16 12.16 55.43 0.67 -24.48 16
8 Si 0.89 20.96 29.55 -169.99 -5.02 15.93 16
9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
12 N -0.68 -13.82 5.99 -99.35 -0.59 -14.41 16
13 C 0.07 1.24 2.74 -66.18 -0.18 1.06 16
14 H 0.09 1.69 6.79 -51.93 -0.35 1.34 16
15 C -0.18 -2.90 6.63 -24.72 -0.16 -3.06 16
16 C 0.05 0.68 7.72 38.21 0.29 0.97 16
17 O -0.38 -5.95 10.49 -35.23 -0.37 -6.32 16
18 C 0.12 1.95 3.43 -27.31 -0.09 1.86 16
19 H 0.09 1.44 7.82 -51.93 -0.41 1.03 16
20 C -0.07 -1.13 4.76 -104.63 -0.50 -1.62 16
21 C -0.10 -1.44 9.36 -39.58 -0.37 -1.81 16
22 C -0.13 -1.62 10.05 -39.58 -0.40 -2.01 16
23 C -0.13 -1.54 10.05 -39.59 -0.40 -1.94 16
24 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16
25 C -0.10 -1.50 9.68 -39.58 -0.38 -1.88 16
26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16
27 H 0.01 0.18 7.55 -51.93 -0.39 -0.21 16
28 H 0.06 1.67 6.83 -51.93 -0.35 1.31 16
29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
30 H 0.33 6.66 7.91 -39.29 -0.31 6.35 16
31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16
32 H 0.09 1.45 7.98 -51.93 -0.41 1.03 16
33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16
34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
35 H 0.12 1.70 7.76 -52.49 -0.41 1.29 16
36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16
37 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16
38 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16
39 H 0.13 1.76 8.05 -52.49 -0.42 1.33 16
LS Contribution 320.45 15.07 4.83 4.83
Total: -1.00 -28.48 320.45 -9.24 -37.71
By element:
Atomic # 1 Polarization: 13.19 SS G_CDS: -5.96 Total: 7.22 kcal
Atomic # 6 Polarization: -17.70 SS G_CDS: -2.79 Total: -20.49 kcal
Atomic # 7 Polarization: -38.97 SS G_CDS: 0.08 Total: -38.89 kcal
Atomic # 8 Polarization: -5.95 SS G_CDS: -0.37 Total: -6.32 kcal
Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal
Total LS contribution 4.83 Total: 4.83 kcal
Total: -28.48 -9.24 -37.71 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000245421727.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.540 kcal
(2) G-P(sol) polarization free energy of solvation -28.477 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.937 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.174 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds