Wall clock time and date at job start Mon Mar 30 2020 06:26:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09005 * 109.47325 * 2 1
4 4 C 1.50705 * 109.47262 * 240.00506 * 2 1 3
5 5 H 1.08004 * 119.99766 * 245.46575 * 4 2 1
6 6 C 1.37872 * 119.99811 * 65.45774 * 4 2 1
7 7 N 1.31512 * 120.00250 * 9.54746 * 6 4 2
8 8 Si 1.86803 * 119.99673 * 189.54937 * 6 4 2
9 9 H 1.48491 * 109.47393 * 84.99781 * 8 6 4
10 10 H 1.48508 * 109.46940 * 204.99729 * 8 6 4
11 11 H 1.48496 * 109.47264 * 324.99464 * 8 6 4
12 12 N 1.46896 * 109.47446 * 120.00211 * 2 1 3
13 13 C 1.46900 * 111.00053 * 275.00056 * 12 2 1
14 14 H 1.08992 * 110.54144 * 32.38342 * 13 12 2
15 15 C 1.54810 * 110.48792 * 269.76407 * 13 12 2
16 16 C 1.54999 * 102.09030 * 262.20288 * 15 13 12
17 17 O 1.44375 * 103.49451 * 322.97807 * 16 15 13
18 18 C 1.43745 * 106.97594 * 40.05790 * 17 16 15
19 19 H 1.09003 * 109.87364 * 93.06143 * 18 17 16
20 20 C 1.50696 * 109.88122 * 214.06448 * 18 17 16
21 21 C 1.38236 * 120.00047 * 38.82536 * 20 18 17
22 22 C 1.38242 * 119.99953 * 180.28371 * 21 20 18
23 23 C 1.38231 * 119.99767 * 359.46024 * 22 21 20
24 24 C 1.38233 * 120.00174 * 0.25755 * 23 22 21
25 25 C 1.38231 * 120.00165 * 218.54992 * 20 18 17
26 26 H 1.09002 * 109.46810 * 183.73775 * 1 2 3
27 27 H 1.08999 * 109.46816 * 303.73599 * 1 2 3
28 28 H 1.08995 * 109.47293 * 63.73666 * 1 2 3
29 29 H 0.97008 * 119.99733 * 179.97438 * 7 6 4
30 30 H 1.00897 * 111.00479 * 151.04196 * 12 2 1
31 31 H 1.08997 * 110.90808 * 144.00394 * 15 13 12
32 32 H 1.08996 * 110.93808 * 20.41644 * 15 13 12
33 33 H 1.09003 * 110.61338 * 204.47385 * 16 15 13
34 34 H 1.09000 * 110.61742 * 81.47945 * 16 15 13
35 35 H 1.07997 * 120.00289 * 0.02562 * 21 20 18
36 36 H 1.07997 * 119.99846 * 179.74206 * 22 21 20
37 37 H 1.08002 * 119.99562 * 180.27880 * 23 22 21
38 38 H 1.07997 * 119.99903 * 180.02562 * 24 23 22
39 39 H 1.08002 * 119.99802 * 359.97438 * 25 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7103 -1.2306
5 1 2.5786 -1.6370 -1.1339
6 6 1.7946 -0.1772 -2.4796
7 7 1.2990 1.0357 -2.5934
8 14 2.1763 -1.1777 -4.0102
9 1 1.0246 -2.0608 -4.3244
10 1 2.4230 -0.2608 -5.1521
11 1 3.3849 -2.0067 -3.7711
12 7 2.0197 -0.6925 1.1993
13 6 2.0826 0.2225 2.3468
14 1 1.2919 0.9700 2.2836
15 6 3.4698 0.9059 2.4196
16 6 4.2070 0.0332 3.4672
17 8 3.1735 -0.2934 4.4209
18 6 1.9783 -0.5624 3.6689
19 1 1.9021 -1.6302 3.4636
20 6 0.7707 -0.1023 4.4441
21 6 0.8218 1.0732 5.1697
22 6 -0.2841 1.4923 5.8856
23 6 -1.4447 0.7416 5.8668
24 6 -1.4977 -0.4309 5.1365
25 6 -0.3900 -0.8527 4.4250
26 1 -0.3633 -1.0255 0.0670
27 1 -0.3633 0.5707 0.8546
28 1 -0.3633 0.4547 -0.9215
29 1 1.1321 1.4109 -3.4723
30 1 2.9173 -1.1206 1.0286
31 1 3.3785 1.9354 2.7659
32 1 3.9750 0.8654 1.4547
33 1 5.0054 0.6004 3.9456
34 1 4.6016 -0.8711 3.0041
35 1 1.7270 1.6621 5.1808
36 1 -0.2428 2.4085 6.4558
37 1 -2.3101 1.0713 6.4224
38 1 -2.4045 -1.0172 5.1215
39 1 -0.4315 -1.7686 3.8542
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000245421727.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:26:17
Heat of formation + Delta-G solvation = -40.771190 kcal
Electronic energy + Delta-G solvation = -19780.079852 eV
Core-core repulsion = 16879.375731 eV
Total energy + Delta-G solvation = -2900.704121 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.18704 -39.37432 -37.30138 -34.59726 -32.96586 -32.11113 -31.72872 -29.69218
-27.94079 -27.11062 -24.19670 -23.34841 -22.87787 -21.71481 -21.36160 -18.64352
-18.11419 -17.07231 -16.97492 -16.60700 -16.39413 -15.75901 -15.36162 -15.07595
-14.98945 -14.57392 -14.18920 -14.07479 -13.80099 -13.63004 -13.33591 -12.95198
-12.77050 -12.69860 -12.53090 -12.33433 -12.16993 -12.01309 -11.89175 -11.80805
-11.63201 -10.95685 -10.74203 -10.56451 -9.77520 -9.64480 -9.06999 -8.18360
-6.27755 0.44516 0.54773 1.41674 1.44064 1.52347 2.40714 2.76584
3.03662 3.14066 3.47614 3.58303 3.98319 4.03125 4.06895 4.13235
4.23116 4.30621 4.33595 4.44914 4.65886 4.72237 4.78744 4.84417
4.89790 4.93730 4.97066 5.04714 5.13587 5.16898 5.21689 5.38996
5.59432 5.64091 5.64504 5.69848 5.77748 5.93623 6.13335 6.15500
6.40890 6.74371 6.97777 7.42018 8.90665
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.024501 B = 0.005320 C = 0.004737
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1142.517985 B = 5261.500585 C = 5908.907612
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C 0.220 3.780
3 H -0.023 1.023
4 C -0.537 4.537
5 H 0.061 0.939
6 C 0.018 3.982
7 N -0.919 5.919
8 Si 0.958 3.042
9 H -0.276 1.276
10 H -0.286 1.286
11 H -0.266 1.266
12 N -0.673 5.673
13 C 0.071 3.929
14 H 0.065 0.935
15 C -0.181 4.181
16 C 0.053 3.947
17 O -0.381 6.381
18 C 0.132 3.868
19 H 0.078 0.922
20 C -0.096 4.096
21 C -0.114 4.114
22 C -0.129 4.129
23 C -0.125 4.125
24 C -0.127 4.127
25 C -0.122 4.122
26 H 0.036 0.964
27 H 0.019 0.981
28 H 0.038 0.962
29 H 0.263 0.737
30 H 0.336 0.664
31 H 0.080 0.920
32 H 0.072 0.928
33 H 0.116 0.884
34 H 0.067 0.933
35 H 0.121 0.879
36 H 0.144 0.856
37 H 0.149 0.851
38 H 0.143 0.857
39 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.510 -0.424 15.222 15.236
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.112 3.888
3 H -0.006 1.006
4 C -0.576 4.576
5 H 0.079 0.921
6 C -0.182 4.182
7 N -0.558 5.558
8 Si 0.783 3.217
9 H -0.201 1.201
10 H -0.212 1.212
11 H -0.190 1.190
12 N -0.304 5.304
13 C -0.041 4.041
14 H 0.083 0.917
15 C -0.220 4.220
16 C -0.023 4.023
17 O -0.301 6.301
18 C 0.073 3.927
19 H 0.096 0.904
20 C -0.096 4.096
21 C -0.132 4.132
22 C -0.147 4.147
23 C -0.142 4.142
24 C -0.145 4.145
25 C -0.140 4.140
26 H 0.055 0.945
27 H 0.038 0.962
28 H 0.057 0.943
29 H 0.072 0.928
30 H 0.155 0.845
31 H 0.099 0.901
32 H 0.091 0.909
33 H 0.134 0.866
34 H 0.085 0.915
35 H 0.139 0.861
36 H 0.162 0.838
37 H 0.166 0.834
38 H 0.161 0.839
39 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -1.166 -0.556 15.475 15.528
hybrid contribution 0.861 0.314 -1.701 1.933
sum -0.304 -0.242 13.773 13.779
Atomic orbital electron populations
1.21472 0.98108 0.98746 0.98097 1.18851 0.92118 0.91298 0.86536
1.00556 1.21513 1.36169 1.08284 0.91611 0.92110 1.25690 0.95059
0.95422 1.02017 1.70091 1.45769 1.15373 1.24540 0.85580 0.78795
0.78569 0.78745 1.20142 1.21154 1.19047 1.60629 1.32368 1.32317
1.05054 1.22817 0.96556 0.93425 0.91303 0.91688 1.23762 0.96836
1.00794 1.00634 1.23618 0.91042 0.98209 0.89451 1.88842 1.19622
1.90321 1.31276 1.21536 0.83648 0.98877 0.88604 0.90427 1.19868
0.94788 0.96219 0.98747 1.21108 0.99218 0.95841 0.97058 1.21450
0.92979 1.00738 0.99501 1.21511 0.98672 0.94803 0.99264 1.21411
0.98477 0.97490 0.97077 1.21174 0.93186 1.00193 0.99426 0.94460
0.96244 0.94306 0.92843 0.84531 0.90143 0.90918 0.86645 0.91490
0.86069 0.83825 0.83369 0.83893 0.85946
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -5.23 9.26 71.98 0.67 -4.56 16
2 C 0.22 11.05 2.33 44.17 0.10 11.15 16
3 H -0.02 -1.30 7.80 -2.38 -0.02 -1.32 16
4 C -0.54 -28.96 8.48 25.60 0.22 -28.74 16
5 H 0.06 3.20 7.69 -2.91 -0.02 3.18 16
6 C 0.02 0.97 5.17 84.65 0.44 1.41 16
7 N -0.92 -52.94 12.16 21.45 0.26 -52.68 16
8 Si 0.96 42.97 29.55 68.60 2.03 45.00 16
9 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16
10 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16
11 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
12 N -0.67 -27.89 5.99 -468.24 -2.80 -30.69 16
13 C 0.07 2.54 2.74 45.91 0.13 2.67 16
14 H 0.06 2.62 6.79 -2.39 -0.02 2.61 16
15 C -0.18 -5.65 6.63 31.90 0.21 -5.44 16
16 C 0.05 1.39 7.72 72.67 0.56 1.95 16
17 O -0.38 -11.71 10.49 -148.98 -1.56 -13.28 16
18 C 0.13 4.27 3.43 30.22 0.10 4.37 16
19 H 0.08 2.62 7.82 -2.39 -0.02 2.60 16
20 C -0.10 -2.97 4.76 -19.87 -0.09 -3.06 16
21 C -0.11 -3.21 9.36 22.27 0.21 -3.01 16
22 C -0.13 -3.00 10.05 22.27 0.22 -2.78 16
23 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16
24 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16
25 C -0.12 -3.52 9.68 22.27 0.22 -3.30 16
26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16
27 H 0.02 0.87 7.55 -2.39 -0.02 0.85 16
28 H 0.04 2.08 6.83 -2.39 -0.02 2.06 16
29 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16
30 H 0.34 13.55 7.91 -89.70 -0.71 12.84 16
31 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16
32 H 0.07 2.47 7.98 -2.39 -0.02 2.45 16
33 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16
34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16
35 H 0.12 3.31 7.76 -2.91 -0.02 3.29 16
36 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16
37 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16
38 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16
39 H 0.12 3.47 8.05 -2.91 -0.02 3.44 16
Total: -1.00 -61.00 320.45 1.66 -59.33
By element:
Atomic # 1 Polarization: 26.63 SS G_CDS: 0.32 Total: 26.94 kcal
Atomic # 6 Polarization: -38.05 SS G_CDS: 3.43 Total: -34.63 kcal
Atomic # 7 Polarization: -80.83 SS G_CDS: -2.54 Total: -83.37 kcal
Atomic # 8 Polarization: -11.71 SS G_CDS: -1.56 Total: -13.28 kcal
Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal
Total: -61.00 1.66 -59.33 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000245421727.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.563 kcal
(2) G-P(sol) polarization free energy of solvation -60.999 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.436 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.334 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.771 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds