Wall clock time and date at job start Mon Mar 30 2020 06:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46931 * 2 1 4 4 C 1.50700 * 109.47460 * 240.00271 * 2 1 3 5 5 H 1.07994 * 120.00111 * 245.46362 * 4 2 1 6 6 C 1.37875 * 119.99859 * 65.45467 * 4 2 1 7 7 N 1.31512 * 120.00231 * 9.56131 * 6 4 2 8 8 Si 1.86798 * 120.00006 * 189.55911 * 6 4 2 9 9 H 1.48500 * 109.47071 * 84.99684 * 8 6 4 10 10 H 1.48500 * 109.47241 * 204.99832 * 8 6 4 11 11 H 1.48507 * 109.46962 * 324.99667 * 8 6 4 12 12 N 1.46894 * 109.47614 * 119.99744 * 2 1 3 13 13 C 1.46897 * 111.00363 * 275.00512 * 12 2 1 14 14 H 1.09002 * 110.45664 * 325.69924 * 13 12 2 15 15 C 1.54510 * 110.51373 * 88.29999 * 13 12 2 16 16 C 1.54802 * 103.91091 * 118.61494 * 15 13 12 17 17 O 1.44423 * 104.85648 * 336.12143 * 16 15 13 18 18 C 1.44422 * 105.27702 * 40.46026 * 17 16 15 19 19 H 1.09004 * 110.37506 * 78.32183 * 18 17 16 20 20 C 1.50699 * 110.37681 * 200.65772 * 18 17 16 21 21 C 1.38239 * 120.00038 * 35.10524 * 20 18 17 22 22 C 1.38232 * 120.00178 * 179.74801 * 21 20 18 23 23 C 1.38233 * 119.99981 * 0.52908 * 22 21 20 24 24 C 1.38235 * 120.00036 * 359.74820 * 23 22 21 25 25 C 1.38233 * 120.00274 * 215.38232 * 20 18 17 26 26 H 1.08996 * 109.47803 * 64.74488 * 1 2 3 27 27 H 1.09003 * 109.46734 * 184.74996 * 1 2 3 28 28 H 1.09006 * 109.47222 * 304.74175 * 1 2 3 29 29 H 0.97003 * 120.00367 * 179.97438 * 7 6 4 30 30 H 1.00897 * 111.00230 * 151.04989 * 12 2 1 31 31 H 1.08994 * 110.51250 * 237.28672 * 15 13 12 32 32 H 1.08997 * 110.51079 * 0.02562 * 15 13 12 33 33 H 1.09003 * 110.38949 * 217.25159 * 16 15 13 34 34 H 1.09000 * 110.39851 * 94.99416 * 16 15 13 35 35 H 1.08006 * 119.99602 * 0.02562 * 21 20 18 36 36 H 1.07997 * 120.00070 * 180.30135 * 22 21 20 37 37 H 1.07999 * 120.00400 * 179.77229 * 23 22 21 38 38 H 1.08003 * 120.00148 * 180.02562 * 24 23 22 39 39 H 1.08002 * 120.00283 * 0.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5785 -1.6370 -1.1339 6 6 1.7945 -0.1773 -2.4796 7 7 1.2991 1.0356 -2.5935 8 14 2.1760 -1.1779 -4.0101 9 1 1.0241 -2.0609 -4.3241 10 1 2.4227 -0.2612 -5.1521 11 1 3.3846 -2.0071 -3.7710 12 7 2.0197 -0.6924 1.1994 13 6 2.0824 0.2226 2.3468 14 1 2.3518 1.2267 2.0191 15 6 0.7324 0.2423 3.0981 16 6 1.0879 -0.2682 4.5156 17 8 2.2943 -1.0422 4.3387 18 6 3.0920 -0.2933 3.3961 19 1 3.5825 0.5431 3.8942 20 6 4.1136 -1.1895 2.7447 21 6 3.8020 -2.5083 2.4713 22 6 4.7372 -3.3289 1.8691 23 6 5.9879 -2.8339 1.5502 24 6 6.3015 -1.5167 1.8289 25 6 5.3642 -0.6945 2.4259 26 1 -0.3634 0.4384 -0.9294 27 1 -0.3633 -1.0242 0.0851 28 1 -0.3634 0.5857 0.8445 29 1 1.1322 1.4108 -3.4723 30 1 2.9173 -1.1203 1.0287 31 1 0.3356 1.2565 3.1439 32 1 0.0186 -0.4272 2.6184 33 1 0.2871 -0.8973 4.9046 34 1 1.2704 0.5709 5.1870 35 1 2.8262 -2.8961 2.7241 36 1 4.4921 -4.3578 1.6510 37 1 6.7199 -3.4760 1.0831 38 1 7.2785 -1.1298 1.5794 39 1 5.6095 0.3345 2.6440 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245421729.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:19 Heat of formation + Delta-G solvation = -15.649487 kcal Electronic energy + Delta-G solvation = -20240.185986 eV Core-core repulsion = 17340.571224 eV Total energy + Delta-G solvation = -2899.614762 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.99412 -38.08757 -35.45444 -32.71035 -31.71909 -30.66563 -30.25302 -28.23937 -26.45125 -25.05048 -22.97545 -22.28140 -21.12292 -20.34057 -19.42357 -16.82180 -16.64439 -15.89966 -15.46772 -15.16861 -14.75555 -14.42143 -14.30266 -13.81452 -13.24744 -13.04193 -12.79171 -12.62817 -12.38402 -11.73989 -11.41711 -11.39761 -11.19560 -11.01424 -10.81507 -10.73831 -10.69807 -10.46045 -10.18188 -10.13435 -9.84239 -9.45560 -8.86783 -8.57465 -8.44654 -8.32691 -7.26568 -6.04252 -4.05598 1.59578 1.74243 3.31230 3.37167 3.40398 3.96044 4.27897 4.42424 4.91435 5.06386 5.10455 5.19250 5.26982 5.30154 5.37907 5.40743 5.47999 5.61630 5.79738 5.85828 5.91194 6.01288 6.14939 6.22180 6.28243 6.38002 6.57979 6.73245 6.81986 6.83172 6.85460 7.09761 7.13579 7.21431 7.29414 7.45324 7.81226 7.87845 8.20216 8.40000 8.72438 9.05722 9.59140 11.04908 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016148 B = 0.008019 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.566085 B = 3490.876729 C = 4743.431822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.210 3.790 3 H 0.007 0.993 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.891 3.109 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.678 5.678 13 C 0.064 3.936 14 H 0.051 0.949 15 C -0.144 4.144 16 C 0.047 3.953 17 O -0.364 6.364 18 C 0.114 3.886 19 H 0.071 0.929 20 C -0.082 4.082 21 C -0.071 4.071 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.111 4.111 26 H 0.060 0.940 27 H 0.033 0.967 28 H 0.012 0.988 29 H 0.260 0.740 30 H 0.340 0.660 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.915 -2.769 11.690 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.102 3.898 3 H 0.024 0.976 4 C -0.556 4.556 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.314 5.314 13 C -0.047 4.047 14 H 0.069 0.931 15 C -0.183 4.183 16 C -0.030 4.030 17 O -0.283 6.283 18 C 0.056 3.944 19 H 0.089 0.911 20 C -0.083 4.083 21 C -0.089 4.089 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.129 4.129 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.164 0.836 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.150 0.850 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.308 -3.084 11.801 12.936 hybrid contribution 0.773 0.390 -1.379 1.628 sum 5.080 -2.694 10.422 11.903 Atomic orbital electron populations 1.21716 0.98397 0.98598 0.99097 1.19159 0.92114 0.92698 0.85786 0.97563 1.21200 1.35666 1.08099 0.90606 0.92364 1.24894 0.95289 0.94606 0.98952 1.69970 1.45122 1.13951 1.23722 0.86633 0.78782 0.80129 0.82610 1.20524 1.21403 1.19950 1.60979 1.33317 1.31831 1.05301 1.22808 0.93125 0.95759 0.93057 0.93119 1.23183 0.98845 1.01639 0.94603 1.23426 0.87587 0.95122 0.96889 1.89106 1.30247 1.46013 1.62925 1.21991 0.91010 0.92059 0.89298 0.91076 1.19484 0.93731 0.94978 1.00065 1.21025 0.99396 0.92718 0.95775 1.21155 0.93715 1.00007 0.99410 1.21114 0.96908 0.95725 0.99895 1.20986 0.99285 0.94099 0.99928 1.20896 0.92838 0.99566 0.99635 0.92099 0.94820 0.96948 0.92982 0.83637 0.91419 0.88955 0.89442 0.93050 0.85014 0.86169 0.86471 0.86328 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 8.59 37.15 0.32 -2.59 16 2 C 0.21 5.33 2.47 -68.87 -0.17 5.16 16 3 H 0.01 0.19 7.40 -51.93 -0.38 -0.20 16 4 C -0.52 -14.37 8.48 -34.44 -0.29 -14.66 16 5 H 0.06 1.63 7.69 -52.49 -0.40 1.23 16 6 C 0.06 1.81 5.16 -17.82 -0.09 1.72 16 7 N -0.89 -25.70 12.17 55.43 0.67 -25.03 16 8 Si 0.89 21.57 29.55 -169.99 -5.02 16.54 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.68 -14.62 5.63 -99.32 -0.56 -15.18 16 13 C 0.06 1.17 3.31 -66.15 -0.22 0.95 16 14 H 0.05 0.98 7.47 -51.93 -0.39 0.59 16 15 C -0.14 -2.30 5.61 -24.99 -0.14 -2.44 16 16 C 0.05 0.64 7.64 38.11 0.29 0.93 16 17 O -0.36 -5.92 10.55 -35.23 -0.37 -6.29 16 18 C 0.11 1.85 3.47 -27.11 -0.09 1.75 16 19 H 0.07 1.02 8.07 -51.93 -0.42 0.61 16 20 C -0.08 -1.35 3.75 -104.62 -0.39 -1.75 16 21 C -0.07 -1.18 7.46 -39.58 -0.30 -1.47 16 22 C -0.12 -1.87 10.05 -39.59 -0.40 -2.26 16 23 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 24 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 25 C -0.11 -1.68 9.69 -39.58 -0.38 -2.06 16 26 H 0.06 1.61 6.81 -51.93 -0.35 1.26 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.01 0.25 6.42 -51.93 -0.33 -0.08 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.34 7.47 4.61 -39.29 -0.18 7.29 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.62 6.82 -51.93 -0.35 1.27 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.13 2.27 7.67 -52.48 -0.40 1.86 16 36 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 311.04 15.07 4.69 4.69 Total: -1.00 -29.65 311.04 -8.99 -38.64 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.74 Total: 7.56 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -2.66 Total: -20.94 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.12 Total: -40.21 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.37 Total: -6.29 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.65 -8.99 -38.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245421729.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.995 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds