Wall clock time and date at job start Mon Mar 30 2020 06:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46931 * 2 1 4 4 C 1.50700 * 109.47460 * 240.00271 * 2 1 3 5 5 H 1.07994 * 120.00111 * 245.46362 * 4 2 1 6 6 C 1.37875 * 119.99859 * 65.45467 * 4 2 1 7 7 N 1.31512 * 120.00231 * 9.56131 * 6 4 2 8 8 Si 1.86798 * 120.00006 * 189.55911 * 6 4 2 9 9 H 1.48500 * 109.47071 * 84.99684 * 8 6 4 10 10 H 1.48500 * 109.47241 * 204.99832 * 8 6 4 11 11 H 1.48507 * 109.46962 * 324.99667 * 8 6 4 12 12 N 1.46894 * 109.47614 * 119.99744 * 2 1 3 13 13 C 1.46897 * 111.00363 * 275.00512 * 12 2 1 14 14 H 1.09002 * 110.45664 * 325.69924 * 13 12 2 15 15 C 1.54510 * 110.51373 * 88.29999 * 13 12 2 16 16 C 1.54802 * 103.91091 * 118.61494 * 15 13 12 17 17 O 1.44423 * 104.85648 * 336.12143 * 16 15 13 18 18 C 1.44422 * 105.27702 * 40.46026 * 17 16 15 19 19 H 1.09004 * 110.37506 * 78.32183 * 18 17 16 20 20 C 1.50699 * 110.37681 * 200.65772 * 18 17 16 21 21 C 1.38239 * 120.00038 * 35.10524 * 20 18 17 22 22 C 1.38232 * 120.00178 * 179.74801 * 21 20 18 23 23 C 1.38233 * 119.99981 * 0.52908 * 22 21 20 24 24 C 1.38235 * 120.00036 * 359.74820 * 23 22 21 25 25 C 1.38233 * 120.00274 * 215.38232 * 20 18 17 26 26 H 1.08996 * 109.47803 * 64.74488 * 1 2 3 27 27 H 1.09003 * 109.46734 * 184.74996 * 1 2 3 28 28 H 1.09006 * 109.47222 * 304.74175 * 1 2 3 29 29 H 0.97003 * 120.00367 * 179.97438 * 7 6 4 30 30 H 1.00897 * 111.00230 * 151.04989 * 12 2 1 31 31 H 1.08994 * 110.51250 * 237.28672 * 15 13 12 32 32 H 1.08997 * 110.51079 * 0.02562 * 15 13 12 33 33 H 1.09003 * 110.38949 * 217.25159 * 16 15 13 34 34 H 1.09000 * 110.39851 * 94.99416 * 16 15 13 35 35 H 1.08006 * 119.99602 * 0.02562 * 21 20 18 36 36 H 1.07997 * 120.00070 * 180.30135 * 22 21 20 37 37 H 1.07999 * 120.00400 * 179.77229 * 23 22 21 38 38 H 1.08003 * 120.00148 * 180.02562 * 24 23 22 39 39 H 1.08002 * 120.00283 * 0.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5785 -1.6370 -1.1339 6 6 1.7945 -0.1773 -2.4796 7 7 1.2991 1.0356 -2.5935 8 14 2.1760 -1.1779 -4.0101 9 1 1.0241 -2.0609 -4.3241 10 1 2.4227 -0.2612 -5.1521 11 1 3.3846 -2.0071 -3.7710 12 7 2.0197 -0.6924 1.1994 13 6 2.0824 0.2226 2.3468 14 1 2.3518 1.2267 2.0191 15 6 0.7324 0.2423 3.0981 16 6 1.0879 -0.2682 4.5156 17 8 2.2943 -1.0422 4.3387 18 6 3.0920 -0.2933 3.3961 19 1 3.5825 0.5431 3.8942 20 6 4.1136 -1.1895 2.7447 21 6 3.8020 -2.5083 2.4713 22 6 4.7372 -3.3289 1.8691 23 6 5.9879 -2.8339 1.5502 24 6 6.3015 -1.5167 1.8289 25 6 5.3642 -0.6945 2.4259 26 1 -0.3634 0.4384 -0.9294 27 1 -0.3633 -1.0242 0.0851 28 1 -0.3634 0.5857 0.8445 29 1 1.1322 1.4108 -3.4723 30 1 2.9173 -1.1203 1.0287 31 1 0.3356 1.2565 3.1439 32 1 0.0186 -0.4272 2.6184 33 1 0.2871 -0.8973 4.9046 34 1 1.2704 0.5709 5.1870 35 1 2.8262 -2.8961 2.7241 36 1 4.4921 -4.3578 1.6510 37 1 6.7199 -3.4760 1.0831 38 1 7.2785 -1.1298 1.5794 39 1 5.6095 0.3345 2.6440 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245421729.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:18 Heat of formation + Delta-G solvation = -33.343655 kcal Electronic energy + Delta-G solvation = -20240.953263 eV Core-core repulsion = 17340.571224 eV Total energy + Delta-G solvation = -2900.382039 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.25708 -39.26316 -37.23093 -34.56812 -32.98406 -31.99040 -31.69663 -29.77926 -27.91897 -27.13302 -24.21525 -23.44215 -22.39377 -22.09810 -20.91973 -18.62775 -17.95120 -17.35339 -16.67738 -16.64280 -16.42397 -16.03889 -15.47754 -15.14545 -14.89292 -14.59280 -14.17448 -13.98123 -13.64962 -13.52608 -12.99623 -12.88769 -12.80545 -12.72839 -12.48014 -12.26018 -12.19373 -12.03627 -11.83934 -11.64419 -11.55177 -10.89376 -10.69087 -10.54280 -9.73427 -9.56786 -9.03491 -8.18068 -6.26673 0.43562 0.58208 1.38737 1.40755 1.49563 2.39965 2.79060 3.09868 3.13479 3.57489 3.67483 3.82519 4.03811 4.16057 4.24632 4.31257 4.33393 4.37756 4.50503 4.67019 4.71826 4.78909 4.83704 4.89762 4.97076 5.08657 5.11821 5.19490 5.23033 5.23796 5.45698 5.59827 5.64246 5.67193 5.67918 5.83851 5.96290 6.16179 6.17424 6.47799 6.81925 7.02114 7.42518 8.90674 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016148 B = 0.008019 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.566085 B = 3490.876729 C = 4743.431822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.217 3.783 3 H -0.029 1.029 4 C -0.535 4.535 5 H 0.051 0.949 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.674 5.674 13 C 0.055 3.945 14 H 0.037 0.963 15 C -0.142 4.142 16 C 0.050 3.950 17 O -0.378 6.378 18 C 0.122 3.878 19 H 0.091 0.909 20 C -0.102 4.102 21 C -0.090 4.090 22 C -0.135 4.135 23 C -0.122 4.122 24 C -0.129 4.129 25 C -0.124 4.124 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.262 0.738 30 H 0.337 0.663 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -3.309 12.173 13.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 H -0.012 1.012 4 C -0.573 4.573 5 H 0.069 0.931 6 C -0.181 4.181 7 N -0.556 5.556 8 Si 0.779 3.221 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.193 1.193 12 N -0.309 5.309 13 C -0.056 4.056 14 H 0.055 0.945 15 C -0.181 4.181 16 C -0.026 4.026 17 O -0.297 6.297 18 C 0.064 3.936 19 H 0.109 0.891 20 C -0.103 4.103 21 C -0.108 4.108 22 C -0.153 4.153 23 C -0.139 4.139 24 C -0.147 4.147 25 C -0.142 4.142 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.160 0.840 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.209 -3.629 12.306 13.847 hybrid contribution 0.517 0.572 -1.490 1.678 sum 5.726 -3.057 10.816 12.615 Atomic orbital electron populations 1.21530 0.97729 0.98592 0.98600 1.18943 0.92569 0.90753 0.86891 1.01172 1.21474 1.35912 1.07987 0.91955 0.93079 1.25655 0.95153 0.95482 1.01835 1.70079 1.45864 1.15214 1.24445 0.85643 0.78778 0.78726 0.78970 1.20009 1.20827 1.19321 1.60941 1.33232 1.32054 1.04716 1.22935 0.95623 0.94397 0.92666 0.94480 1.23137 0.97024 1.02197 0.95708 1.23581 0.87223 0.96136 0.95702 1.89099 1.31094 1.46824 1.62705 1.21954 0.90453 0.92578 0.88655 0.89092 1.19657 0.94548 0.95136 1.00935 1.21023 0.99327 0.93364 0.97110 1.21433 0.94008 1.00754 0.99104 1.21494 0.96990 0.96218 0.99248 1.21387 1.00221 0.94107 0.98947 1.21197 0.92654 1.00630 0.99695 0.94703 0.94877 0.94756 0.92854 0.83987 0.90022 0.90789 0.87723 0.90339 0.86522 0.84589 0.83722 0.83656 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.24 8.59 71.98 0.62 -4.62 16 2 C 0.22 11.26 2.47 44.17 0.11 11.37 16 3 H -0.03 -1.70 7.40 -2.38 -0.02 -1.72 16 4 C -0.53 -30.15 8.48 25.60 0.22 -29.93 16 5 H 0.05 2.89 7.69 -2.91 -0.02 2.87 16 6 C 0.02 1.03 5.16 84.65 0.44 1.47 16 7 N -0.92 -53.73 12.17 21.45 0.26 -53.47 16 8 Si 0.95 44.23 29.55 68.60 2.03 46.25 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 N -0.67 -29.51 5.63 -468.14 -2.64 -32.14 16 13 C 0.05 2.00 3.31 45.93 0.15 2.15 16 14 H 0.04 1.45 7.47 -2.39 -0.02 1.44 16 15 C -0.14 -4.40 5.61 31.72 0.18 -4.22 16 16 C 0.05 1.26 7.64 72.60 0.55 1.82 16 17 O -0.38 -11.82 10.55 -148.98 -1.57 -13.39 16 18 C 0.12 3.83 3.47 30.35 0.11 3.93 16 19 H 0.09 2.48 8.07 -2.39 -0.02 2.46 16 20 C -0.10 -3.33 3.75 -19.87 -0.07 -3.40 16 21 C -0.09 -2.98 7.46 22.27 0.17 -2.82 16 22 C -0.13 -3.93 10.05 22.27 0.22 -3.70 16 23 C -0.12 -3.18 10.05 22.27 0.22 -2.95 16 24 C -0.13 -3.38 10.05 22.27 0.22 -3.15 16 25 C -0.12 -3.60 9.69 22.27 0.22 -3.38 16 26 H 0.03 1.87 6.81 -2.39 -0.02 1.85 16 27 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.03 1.48 6.42 -2.38 -0.02 1.47 16 29 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.34 15.06 4.61 -89.70 -0.41 14.65 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.07 2.56 6.82 -2.39 -0.02 2.55 16 33 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.12 4.11 7.67 -2.91 -0.02 4.09 16 36 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 39 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -63.92 311.04 2.05 -61.87 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.62 Total: 28.31 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 3.35 Total: -37.43 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -2.37 Total: -85.61 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -1.57 Total: -13.39 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -63.92 2.05 -61.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245421729.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.527 kcal (2) G-P(sol) polarization free energy of solvation -63.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds