Wall clock time and date at job start Mon Mar 30 2020 06:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47078 * 2 1 4 4 C 1.50700 * 109.46767 * 240.00195 * 2 1 3 5 5 H 1.08003 * 119.99661 * 240.00113 * 4 2 1 6 6 C 1.37873 * 120.00480 * 59.99979 * 4 2 1 7 7 N 1.31521 * 119.99605 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00512 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46956 * 59.99752 * 8 6 4 10 10 H 1.48494 * 109.47256 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46946 * 300.00134 * 8 6 4 12 12 N 1.46901 * 109.47082 * 120.00183 * 2 1 3 13 13 C 1.46900 * 111.00022 * 274.99776 * 12 2 1 14 14 H 1.08998 * 109.47014 * 35.00217 * 13 12 2 15 15 C 1.53005 * 109.47042 * 275.00016 * 13 12 2 16 16 C 1.52997 * 109.47138 * 155.00189 * 13 12 2 17 17 H 1.09004 * 110.85762 * 301.90545 * 16 13 12 18 18 C 1.54704 * 110.93691 * 65.63122 * 16 13 12 19 19 O 1.43777 * 102.78391 * 143.37958 * 18 16 13 20 20 C 1.36136 * 109.20024 * 332.11853 * 19 18 16 21 21 C 1.39289 * 129.89997 * 198.78028 * 20 19 18 22 22 C 1.37926 * 120.23806 * 180.96817 * 21 20 19 23 23 C 1.38286 * 120.35637 * 359.97438 * 22 21 20 24 24 C 1.38355 * 119.76177 * 359.81267 * 23 22 21 25 25 C 1.37735 * 119.97720 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.46594 * 299.99700 * 1 2 3 27 27 H 1.09001 * 109.47226 * 59.99852 * 1 2 3 28 28 H 1.08997 * 109.47078 * 179.97438 * 1 2 3 29 29 H 0.97001 * 120.00017 * 179.97438 * 7 6 4 30 30 H 1.00901 * 111.00099 * 38.95088 * 12 2 1 31 31 H 1.09001 * 109.46734 * 186.86208 * 15 13 12 32 32 H 1.09000 * 109.46894 * 306.86491 * 15 13 12 33 33 H 1.09002 * 109.47185 * 66.86369 * 15 13 12 34 34 H 1.09000 * 110.74864 * 25.05140 * 18 16 13 35 35 H 1.09005 * 110.74913 * 261.70103 * 18 16 13 36 36 H 1.07998 * 119.87802 * 0.96821 * 21 20 19 37 37 H 1.08008 * 119.82047 * 180.02562 * 22 21 20 38 38 H 1.07994 * 120.12044 * 179.83483 * 23 22 21 39 39 H 1.08003 * 120.00845 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8277 -0.4192 -5.2204 11 1 3.8073 -1.1189 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2577 0.9328 2.2907 15 6 3.4112 0.9808 2.3223 16 6 1.9771 -0.5798 3.6454 17 1 1.0523 -1.1561 3.6715 18 6 3.2073 -1.4999 3.8281 19 8 3.4314 -1.4532 5.2475 20 6 2.9792 -0.2647 5.7333 21 6 3.2762 0.3823 6.9306 22 6 2.6806 1.5887 7.2345 23 6 1.7844 2.1670 6.3544 24 6 1.4873 1.5329 5.1611 25 6 2.0835 0.3298 4.8541 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7094 1.1619 -3.4844 30 1 1.4495 -1.4979 1.4100 31 1 3.5114 1.5677 3.2353 32 1 4.2343 0.2694 2.2555 33 1 3.4344 1.6454 1.4587 34 1 4.0680 -1.1056 3.2879 35 1 2.9805 -2.5163 3.5061 36 1 3.9754 -0.0623 7.6233 37 1 2.9162 2.0847 8.1646 38 1 1.3182 3.1103 6.5975 39 1 0.7876 1.9808 4.4710 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246039528.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:24 Heat of formation + Delta-G solvation = -6.776692 kcal Electronic energy + Delta-G solvation = -19733.031912 eV Core-core repulsion = 16833.801903 eV Total energy + Delta-G solvation = -2899.230009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.21116 -37.40432 -36.82010 -33.87083 -31.82650 -30.22997 -29.76272 -28.22794 -27.04904 -25.17782 -23.93116 -22.66777 -21.92809 -20.18351 -19.25834 -17.25871 -16.71324 -16.32264 -15.85467 -15.49703 -14.81681 -14.55581 -14.09546 -13.78964 -13.49386 -13.27943 -12.86078 -12.59827 -12.55436 -11.91477 -11.73678 -11.59060 -11.37345 -11.31251 -10.96201 -10.90781 -10.78951 -10.60546 -10.49970 -10.28355 -10.06452 -9.78609 -9.00774 -8.85569 -8.36668 -8.07637 -7.31205 -5.99472 -4.02737 1.31376 1.39775 3.33691 3.37842 3.38969 3.41002 3.75389 4.39325 4.51171 4.67609 4.90577 5.01929 5.13577 5.21225 5.31624 5.32330 5.44030 5.57327 5.58847 5.69727 5.74727 5.98513 6.11008 6.16639 6.31230 6.35720 6.46132 6.48463 6.50760 6.64197 6.66686 6.78657 6.80630 7.08106 7.25270 7.34891 7.71680 7.86705 8.25554 8.49385 8.58766 9.03986 9.62619 11.07571 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038253 B = 0.004508 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.794913 B = 6210.269257 C = 6579.098674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.213 3.787 3 H 0.035 0.965 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.679 5.679 13 C 0.098 3.902 14 H 0.042 0.958 15 C -0.138 4.138 16 C -0.080 4.080 17 H 0.091 0.909 18 C 0.059 3.941 19 O -0.311 6.311 20 C 0.108 3.892 21 C -0.145 4.145 22 C -0.091 4.091 23 C -0.153 4.153 24 C -0.068 4.068 25 C -0.153 4.153 26 H 0.004 0.996 27 H 0.089 0.911 28 H 0.027 0.973 29 H 0.260 0.740 30 H 0.324 0.676 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 0.816 16.620 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.310 5.310 13 C -0.012 4.012 14 H 0.060 0.940 15 C -0.196 4.196 16 C -0.098 4.098 17 H 0.109 0.891 18 C -0.015 4.015 19 O -0.225 6.225 20 C 0.062 3.938 21 C -0.164 4.164 22 C -0.109 4.109 23 C -0.171 4.171 24 C -0.086 4.086 25 C -0.154 4.154 26 H 0.023 0.977 27 H 0.107 0.893 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.141 0.859 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.545 0.822 16.392 16.608 hybrid contribution -0.880 -0.249 -0.886 1.273 sum 1.665 0.572 15.506 15.605 Atomic orbital electron populations 1.22442 1.00812 0.99164 1.00443 1.19193 0.89440 0.94496 0.86372 0.94709 1.21103 1.30246 1.12431 0.89583 0.92009 1.24945 0.95337 0.95199 0.99029 1.69874 1.37301 1.23155 1.23440 0.86573 0.79181 0.79591 0.82095 1.20397 1.21495 1.20310 1.60936 1.58055 1.08790 1.03181 1.21310 0.97519 0.94084 0.88330 0.94026 1.21866 0.97240 0.99779 1.00714 1.21651 0.99346 0.95311 0.93520 0.89104 1.24045 0.98118 1.01564 0.77787 1.86802 1.79529 1.32051 1.24125 1.19616 0.93230 0.86093 0.94842 1.20216 1.03854 0.96038 0.96270 1.20806 0.96330 0.94434 0.99329 1.21000 1.00600 1.00856 0.94625 1.20368 0.98501 0.93180 0.96529 1.20756 0.99856 0.97391 0.97440 0.97730 0.89266 0.95366 0.93031 0.85881 0.93529 0.92149 0.92241 0.88966 0.87597 0.85798 0.85530 0.85742 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 8.92 37.16 0.33 -3.65 16 2 C 0.21 5.16 2.39 -68.86 -0.16 5.00 16 3 H 0.04 0.94 7.18 -51.93 -0.37 0.57 16 4 C -0.49 -13.39 8.84 -34.44 -0.30 -13.69 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.68 -13.52 5.84 -100.95 -0.59 -14.11 16 13 C 0.10 1.67 2.27 -67.71 -0.15 1.52 16 14 H 0.04 0.76 7.11 -51.93 -0.37 0.39 16 15 C -0.14 -2.33 8.72 37.16 0.32 -2.01 16 16 C -0.08 -1.17 2.89 -90.41 -0.26 -1.43 16 17 H 0.09 1.30 8.12 -51.93 -0.42 0.88 16 18 C 0.06 0.83 7.18 38.05 0.27 1.11 16 19 O -0.31 -4.66 11.11 -20.17 -0.22 -4.88 16 20 C 0.11 1.54 7.03 -38.95 -0.27 1.27 16 21 C -0.15 -1.76 10.06 -39.30 -0.40 -2.16 16 22 C -0.09 -0.96 10.01 -39.68 -0.40 -1.36 16 23 C -0.15 -1.69 10.07 -39.52 -0.40 -2.08 16 24 C -0.07 -0.87 9.76 -39.72 -0.39 -1.26 16 25 C -0.15 -2.18 4.39 -104.10 -0.46 -2.64 16 26 H 0.00 0.08 7.43 -51.93 -0.39 -0.31 16 27 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 28 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.32 6.11 8.09 -39.29 -0.32 5.79 16 31 H 0.05 0.72 6.87 -51.93 -0.36 0.36 16 32 H 0.06 1.01 6.26 -51.93 -0.33 0.68 16 33 H 0.06 1.10 7.53 -51.93 -0.39 0.71 16 34 H 0.09 1.35 5.66 -51.93 -0.29 1.05 16 35 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 311.90 15.07 4.70 4.70 Total: -1.00 -28.56 311.90 -8.50 -37.06 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.63 Total: 5.70 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -2.36 Total: -19.96 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.04 Total: -38.91 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.22 Total: -4.88 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.56 -8.50 -37.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246039528.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.282 kcal (2) G-P(sol) polarization free energy of solvation -28.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds