Wall clock time and date at job start Mon Mar 30 2020 06:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47078 * 2 1 4 4 C 1.50700 * 109.46767 * 240.00195 * 2 1 3 5 5 H 1.08003 * 119.99661 * 240.00113 * 4 2 1 6 6 C 1.37873 * 120.00480 * 59.99979 * 4 2 1 7 7 N 1.31521 * 119.99605 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00512 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46956 * 59.99752 * 8 6 4 10 10 H 1.48494 * 109.47256 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46946 * 300.00134 * 8 6 4 12 12 N 1.46901 * 109.47082 * 120.00183 * 2 1 3 13 13 C 1.46900 * 111.00022 * 274.99776 * 12 2 1 14 14 H 1.08998 * 109.47014 * 35.00217 * 13 12 2 15 15 C 1.53005 * 109.47042 * 275.00016 * 13 12 2 16 16 C 1.52997 * 109.47138 * 155.00189 * 13 12 2 17 17 H 1.09004 * 110.85762 * 301.90545 * 16 13 12 18 18 C 1.54704 * 110.93691 * 65.63122 * 16 13 12 19 19 O 1.43777 * 102.78391 * 143.37958 * 18 16 13 20 20 C 1.36136 * 109.20024 * 332.11853 * 19 18 16 21 21 C 1.39289 * 129.89997 * 198.78028 * 20 19 18 22 22 C 1.37926 * 120.23806 * 180.96817 * 21 20 19 23 23 C 1.38286 * 120.35637 * 359.97438 * 22 21 20 24 24 C 1.38355 * 119.76177 * 359.81267 * 23 22 21 25 25 C 1.37735 * 119.97720 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.46594 * 299.99700 * 1 2 3 27 27 H 1.09001 * 109.47226 * 59.99852 * 1 2 3 28 28 H 1.08997 * 109.47078 * 179.97438 * 1 2 3 29 29 H 0.97001 * 120.00017 * 179.97438 * 7 6 4 30 30 H 1.00901 * 111.00099 * 38.95088 * 12 2 1 31 31 H 1.09001 * 109.46734 * 186.86208 * 15 13 12 32 32 H 1.09000 * 109.46894 * 306.86491 * 15 13 12 33 33 H 1.09002 * 109.47185 * 66.86369 * 15 13 12 34 34 H 1.09000 * 110.74864 * 25.05140 * 18 16 13 35 35 H 1.09005 * 110.74913 * 261.70103 * 18 16 13 36 36 H 1.07998 * 119.87802 * 0.96821 * 21 20 19 37 37 H 1.08008 * 119.82047 * 180.02562 * 22 21 20 38 38 H 1.07994 * 120.12044 * 179.83483 * 23 22 21 39 39 H 1.08003 * 120.00845 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8277 -0.4192 -5.2204 11 1 3.8073 -1.1189 -4.0078 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2577 0.9328 2.2907 15 6 3.4112 0.9808 2.3223 16 6 1.9771 -0.5798 3.6454 17 1 1.0523 -1.1561 3.6715 18 6 3.2073 -1.4999 3.8281 19 8 3.4314 -1.4532 5.2475 20 6 2.9792 -0.2647 5.7333 21 6 3.2762 0.3823 6.9306 22 6 2.6806 1.5887 7.2345 23 6 1.7844 2.1670 6.3544 24 6 1.4873 1.5329 5.1611 25 6 2.0835 0.3298 4.8541 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7094 1.1619 -3.4844 30 1 1.4495 -1.4979 1.4100 31 1 3.5114 1.5677 3.2353 32 1 4.2343 0.2694 2.2555 33 1 3.4344 1.6454 1.4587 34 1 4.0680 -1.1056 3.2879 35 1 2.9805 -2.5163 3.5061 36 1 3.9754 -0.0623 7.6233 37 1 2.9162 2.0847 8.1646 38 1 1.3182 3.1103 6.5975 39 1 0.7876 1.9808 4.4710 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246039528.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:23 Heat of formation + Delta-G solvation = -23.518605 kcal Electronic energy + Delta-G solvation = -19733.757896 eV Core-core repulsion = 16833.801903 eV Total energy + Delta-G solvation = -2899.955993 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.27392 -38.56608 -38.18327 -35.57615 -33.49432 -31.45760 -30.81926 -29.42937 -28.73544 -27.23288 -25.16480 -23.74650 -22.99394 -21.89822 -20.64089 -18.43559 -18.28176 -17.48634 -17.20241 -16.78603 -16.39829 -16.04299 -15.37512 -15.15335 -14.74358 -14.45428 -14.25885 -13.98638 -13.91305 -13.47713 -13.13805 -12.97286 -12.89944 -12.76126 -12.63010 -12.50328 -12.30799 -12.18135 -12.00542 -11.71676 -11.51634 -11.46393 -10.99790 -10.46263 -9.80885 -9.09456 -8.98123 -8.08136 -6.18693 0.37295 0.44736 1.44527 1.45726 1.53309 2.37562 2.44928 2.80383 3.20580 3.27577 3.59386 3.77675 3.87246 4.04305 4.11461 4.25605 4.39834 4.45831 4.56705 4.58016 4.63440 4.73530 4.81152 4.87342 4.90772 4.94124 4.98412 5.13056 5.17617 5.35786 5.42122 5.46347 5.52936 5.58937 5.70681 5.71937 5.83944 6.25861 6.29192 6.64620 6.83595 6.96373 7.51180 8.97281 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038253 B = 0.004508 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.794913 B = 6210.269257 C = 6579.098674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.219 3.781 3 H 0.003 0.997 4 C -0.512 4.512 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.924 5.924 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.677 5.677 13 C 0.105 3.895 14 H 0.029 0.971 15 C -0.130 4.130 16 C -0.072 4.072 17 H 0.094 0.906 18 C 0.061 3.939 19 O -0.322 6.322 20 C 0.081 3.919 21 C -0.149 4.149 22 C -0.084 4.084 23 C -0.148 4.148 24 C -0.083 4.083 25 C -0.170 4.170 26 H 0.022 0.978 27 H 0.060 0.940 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.332 0.668 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.141 0.859 37 H 0.163 0.837 38 H 0.152 0.848 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.133 0.733 18.233 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.111 3.889 3 H 0.021 0.979 4 C -0.551 4.551 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.308 5.308 13 C -0.005 4.005 14 H 0.047 0.953 15 C -0.187 4.187 16 C -0.091 4.091 17 H 0.112 0.888 18 C -0.013 4.013 19 O -0.236 6.236 20 C 0.037 3.963 21 C -0.168 4.168 22 C -0.101 4.101 23 C -0.166 4.166 24 C -0.101 4.101 25 C -0.172 4.172 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.150 0.850 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.159 0.841 37 H 0.180 0.820 38 H 0.169 0.831 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.839 0.730 18.024 18.261 hybrid contribution -0.967 -0.148 -1.275 1.608 sum 1.872 0.582 16.749 16.863 Atomic orbital electron populations 1.22253 1.00232 0.99239 0.99910 1.18916 0.89731 0.92789 0.87501 0.97940 1.21424 1.30272 1.12432 0.90957 0.92527 1.25696 0.95525 0.95869 1.01849 1.70007 1.38161 1.24289 1.23934 0.85604 0.78607 0.78707 0.78626 1.19631 1.21229 1.20002 1.60772 1.57765 1.09215 1.03036 1.21239 0.97040 0.93675 0.88579 0.95279 1.21775 0.97237 0.99447 1.00283 1.21499 0.99828 0.95386 0.92371 0.88818 1.24021 0.97404 1.02049 0.77822 1.86776 1.79951 1.32758 1.24146 1.19932 0.94112 0.86304 0.96001 1.20597 1.04012 0.96465 0.95699 1.21247 0.94983 0.93593 1.00297 1.21377 1.00095 1.01527 0.93633 1.20573 0.98811 0.93085 0.97633 1.20762 1.00977 0.98150 0.97290 0.95862 0.92097 0.94839 0.93118 0.84997 0.92051 0.92055 0.94643 0.89769 0.86362 0.84131 0.81985 0.83051 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.45 8.92 71.98 0.64 -6.80 16 2 C 0.22 10.85 2.39 44.17 0.11 10.95 16 3 H 0.00 0.15 7.18 -2.39 -0.02 0.13 16 4 C -0.51 -28.00 8.84 25.60 0.23 -27.78 16 5 H 0.06 3.09 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -53.11 11.32 21.45 0.24 -52.87 16 8 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 N -0.68 -27.12 5.84 -473.31 -2.76 -29.88 16 13 C 0.10 3.59 2.27 44.92 0.10 3.70 16 14 H 0.03 1.08 7.11 -2.39 -0.02 1.06 16 15 C -0.13 -4.43 8.72 71.98 0.63 -3.80 16 16 C -0.07 -2.08 2.89 -10.66 -0.03 -2.11 16 17 H 0.09 2.62 8.12 -2.38 -0.02 2.60 16 18 C 0.06 1.69 7.18 72.56 0.52 2.21 16 19 O -0.32 -9.38 11.11 -95.09 -1.06 -10.44 16 20 C 0.08 2.23 7.03 22.68 0.16 2.39 16 21 C -0.15 -3.26 10.06 22.45 0.23 -3.03 16 22 C -0.08 -1.47 10.01 22.21 0.22 -1.25 16 23 C -0.15 -2.84 10.07 22.31 0.22 -2.61 16 24 C -0.08 -2.02 9.76 22.18 0.22 -1.80 16 25 C -0.17 -4.69 4.39 -19.53 -0.09 -4.78 16 26 H 0.02 0.97 7.43 -2.39 -0.02 0.95 16 27 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 28 H 0.03 1.50 8.13 -2.39 -0.02 1.48 16 29 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.33 12.39 8.09 -89.69 -0.73 11.67 16 31 H 0.06 1.88 6.87 -2.39 -0.02 1.87 16 32 H 0.06 2.06 6.26 -2.39 -0.01 2.05 16 33 H 0.03 1.35 7.53 -2.39 -0.02 1.33 16 34 H 0.08 2.44 5.66 -2.39 -0.01 2.43 16 35 H 0.12 2.90 8.14 -2.38 -0.02 2.88 16 36 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -61.29 311.90 2.38 -58.91 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.32 Total: 22.24 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 3.61 Total: -33.79 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -2.52 Total: -82.75 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.06 Total: -10.44 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -61.29 2.38 -58.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246039528.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.392 kcal (2) G-P(sol) polarization free energy of solvation -61.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds