Wall clock time and date at job start Mon Mar 30 2020 06:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47223 * 2 1 4 4 C 1.50706 * 109.47284 * 240.00074 * 2 1 3 5 5 H 1.07995 * 119.99620 * 240.00180 * 4 2 1 6 6 C 1.37871 * 119.99713 * 60.00043 * 4 2 1 7 7 N 1.31512 * 120.00416 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99710 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47344 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46963 * 120.00099 * 8 6 4 11 11 H 1.48497 * 109.47290 * 240.00020 * 8 6 4 12 12 N 1.46900 * 109.46840 * 120.00199 * 2 1 3 13 13 C 1.46905 * 110.99990 * 273.53270 * 12 2 1 14 14 H 1.08998 * 109.46674 * 347.52041 * 13 12 2 15 15 C 1.52996 * 109.46819 * 107.51963 * 13 12 2 16 16 C 1.52997 * 109.47007 * 227.52296 * 13 12 2 17 17 H 1.09003 * 110.83526 * 300.69701 * 16 13 12 18 18 C 1.54705 * 110.94495 * 64.42090 * 16 13 12 19 19 O 1.43756 * 102.79720 * 92.79304 * 18 16 13 20 20 C 1.36140 * 109.28823 * 27.54962 * 19 18 16 21 21 C 1.39287 * 129.87835 * 161.43404 * 20 19 18 22 22 C 1.37929 * 120.24157 * 179.61436 * 21 20 19 23 23 C 1.38289 * 120.35325 * 359.97319 * 22 21 20 24 24 C 1.38352 * 119.76248 * 0.19835 * 23 22 21 25 25 C 1.37664 * 120.00671 * 0.02786 * 24 23 22 26 26 H 1.08997 * 109.47449 * 298.41843 * 1 2 3 27 27 H 1.09009 * 109.47025 * 58.41741 * 1 2 3 28 28 H 1.08999 * 109.47282 * 178.40904 * 1 2 3 29 29 H 0.96999 * 120.00254 * 179.97438 * 7 6 4 30 30 H 1.00905 * 111.00063 * 37.48688 * 12 2 1 31 31 H 1.09000 * 109.47065 * 66.47332 * 15 13 12 32 32 H 1.09001 * 109.47448 * 306.46422 * 15 13 12 33 33 H 1.09005 * 109.47068 * 186.46430 * 15 13 12 34 34 H 1.09004 * 110.75027 * 211.12006 * 18 16 13 35 35 H 1.08995 * 110.74841 * 334.28375 * 18 16 13 36 36 H 1.08000 * 119.87993 * 359.59142 * 21 20 19 37 37 H 1.08000 * 119.82579 * 179.97438 * 22 21 20 38 38 H 1.07999 * 120.12032 * 180.21510 * 23 22 21 39 39 H 1.07999 * 120.00751 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1475 -2.2863 -3.6038 10 1 1.1679 -1.5865 -4.8165 11 1 3.1474 -0.1857 -4.8160 12 7 2.0196 -0.6925 1.1994 13 6 2.1154 0.2306 2.3381 14 1 2.0149 1.2564 1.9836 15 6 0.9983 -0.0752 3.3379 16 6 3.4732 0.0580 3.0218 17 1 3.6022 -0.9653 3.3747 18 6 4.6256 0.4655 2.0736 19 8 4.8355 1.8488 2.4036 20 6 4.4650 2.0640 3.6958 21 6 4.7914 3.1097 4.5561 22 6 4.2919 3.1334 5.8415 23 6 3.4626 2.1207 6.2878 24 6 3.1365 1.0766 5.4407 25 6 3.6374 1.0480 4.1587 26 1 -0.3634 0.4890 0.9038 27 1 -0.3633 0.5383 -0.8755 28 1 -0.3634 -1.0272 -0.0285 29 1 0.7096 1.1619 -3.4844 30 1 1.4354 -1.4841 1.4238 31 1 1.1640 -1.0584 3.7783 32 1 0.0374 -0.0646 2.8235 33 1 0.9978 0.6797 4.1243 34 1 5.5211 -0.1209 2.2798 35 1 4.3254 0.3555 1.0315 36 1 5.4383 3.9046 4.2155 37 1 4.5497 3.9472 6.5031 38 1 3.0708 2.1448 7.2939 39 1 2.4889 0.2838 5.7849 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246039531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:25 Heat of formation + Delta-G solvation = -8.593243 kcal Electronic energy + Delta-G solvation = -19878.763396 eV Core-core repulsion = 16979.454615 eV Total energy + Delta-G solvation = -2899.308781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.01211 -37.30357 -36.72941 -33.73668 -31.85679 -30.12107 -29.57975 -28.69956 -26.90713 -25.06819 -23.45454 -22.12052 -21.84518 -20.31443 -20.11495 -17.06523 -16.48762 -16.18411 -15.65365 -15.36742 -14.84267 -14.26782 -14.12013 -13.77685 -13.30379 -13.10517 -12.73139 -12.54815 -12.30339 -12.13904 -11.83128 -11.62362 -11.48126 -11.14039 -10.95192 -10.84320 -10.71092 -10.49364 -10.39075 -10.30804 -10.13030 -9.81579 -9.00475 -8.75174 -8.36745 -7.96016 -7.29989 -5.98624 -4.02312 1.39789 1.49535 3.31495 3.39570 3.44016 3.58733 3.83585 4.42783 4.65236 4.83090 5.00024 5.09381 5.19164 5.33168 5.38673 5.43945 5.52635 5.60207 5.69663 5.75876 5.86076 6.01478 6.06161 6.28860 6.37414 6.39271 6.43362 6.47960 6.54186 6.63595 6.73624 6.77025 6.86096 7.09669 7.34536 7.43782 7.73930 7.88290 8.26702 8.51467 8.59366 9.05335 9.63468 11.08342 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030889 B = 0.005090 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.239425 B = 5499.177604 C = 5910.444542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.681 5.681 13 C 0.096 3.904 14 H 0.068 0.932 15 C -0.172 4.172 16 C -0.060 4.060 17 H 0.091 0.909 18 C 0.059 3.941 19 O -0.305 6.305 20 C 0.113 3.887 21 C -0.148 4.148 22 C -0.090 4.090 23 C -0.159 4.159 24 C -0.069 4.069 25 C -0.162 4.162 26 H 0.006 0.994 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.259 0.741 30 H 0.330 0.670 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 1.150 15.750 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.212 1.212 12 N -0.310 5.310 13 C -0.015 4.015 14 H 0.086 0.914 15 C -0.231 4.231 16 C -0.080 4.080 17 H 0.110 0.890 18 C -0.015 4.015 19 O -0.218 6.218 20 C 0.067 3.933 21 C -0.167 4.167 22 C -0.108 4.108 23 C -0.178 4.178 24 C -0.087 4.087 25 C -0.163 4.163 26 H 0.025 0.975 27 H 0.105 0.895 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.869 1.465 15.223 16.050 hybrid contribution -0.831 -0.420 -0.628 1.123 sum 4.039 1.045 14.595 15.180 Atomic orbital electron populations 1.22472 1.00702 0.99395 1.00216 1.19304 0.89705 0.94144 0.86386 0.94846 1.21192 1.30305 1.12435 0.89573 0.91866 1.24951 0.95314 0.95162 0.99056 1.69896 1.37297 1.23136 1.23243 0.86480 0.78504 0.79652 0.82975 1.19746 1.21269 1.21153 1.60698 1.57283 1.09572 1.03476 1.21396 0.91105 0.97691 0.91308 0.91415 1.22467 0.99395 1.01217 0.99998 1.21436 0.96903 0.98275 0.91368 0.89034 1.23966 0.96618 0.78056 1.02861 1.86856 1.81915 1.29667 1.23366 1.19763 0.93451 0.95278 0.84837 1.20233 1.04456 0.99165 0.92809 1.20783 0.96953 0.98428 0.94651 1.20958 1.01443 0.95425 0.99939 1.20304 0.98380 0.98204 0.91822 1.20939 1.00589 0.98928 0.95875 0.97506 0.89477 0.95314 0.93126 0.85313 0.92769 0.92298 0.92692 0.91381 0.85208 0.85821 0.85669 0.85977 0.86112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 8.90 37.16 0.33 -3.65 16 2 C 0.21 5.16 2.52 -68.86 -0.17 4.99 16 3 H 0.03 0.92 7.34 -51.93 -0.38 0.54 16 4 C -0.50 -13.36 8.84 -34.44 -0.30 -13.66 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.54 11.34 55.43 0.63 -24.91 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.68 -13.55 5.50 -100.95 -0.56 -14.10 16 13 C 0.10 1.67 2.21 -67.71 -0.15 1.52 16 14 H 0.07 1.38 7.14 -51.93 -0.37 1.01 16 15 C -0.17 -2.55 8.59 37.16 0.32 -2.23 16 16 C -0.06 -0.94 2.87 -90.41 -0.26 -1.20 16 17 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 18 C 0.06 0.99 7.47 38.05 0.28 1.28 16 19 O -0.30 -5.47 11.10 -20.19 -0.22 -5.70 16 20 C 0.11 1.81 7.04 -38.92 -0.27 1.53 16 21 C -0.15 -2.00 10.06 -39.30 -0.40 -2.40 16 22 C -0.09 -1.02 10.02 -39.68 -0.40 -1.42 16 23 C -0.16 -1.79 10.07 -39.52 -0.40 -2.19 16 24 C -0.07 -0.87 8.69 -39.75 -0.35 -1.22 16 25 C -0.16 -2.41 5.16 -104.09 -0.54 -2.95 16 26 H 0.01 0.13 6.74 -51.93 -0.35 -0.22 16 27 H 0.09 2.31 6.11 -51.92 -0.32 1.99 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.33 6.25 7.90 -39.29 -0.31 5.94 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.92 6.77 -51.93 -0.35 0.57 16 33 H 0.05 0.76 6.49 -51.93 -0.34 0.42 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.13 2.48 7.46 -51.93 -0.39 2.10 16 36 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.31 7.86 -52.49 -0.41 0.90 16 LS Contribution 313.21 15.07 4.72 4.72 Total: -1.00 -28.52 313.21 -8.57 -37.09 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.72 Total: 6.77 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.39 Total: -20.17 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.07 Total: -39.01 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.22 Total: -5.70 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.52 -8.57 -37.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246039531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.494 kcal (2) G-P(sol) polarization free energy of solvation -28.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds