Wall clock time and date at job start Mon Mar 30 2020 06:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47223 * 2 1 4 4 C 1.50706 * 109.47284 * 240.00074 * 2 1 3 5 5 H 1.07995 * 119.99620 * 240.00180 * 4 2 1 6 6 C 1.37871 * 119.99713 * 60.00043 * 4 2 1 7 7 N 1.31512 * 120.00416 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99710 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47344 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46963 * 120.00099 * 8 6 4 11 11 H 1.48497 * 109.47290 * 240.00020 * 8 6 4 12 12 N 1.46900 * 109.46840 * 120.00199 * 2 1 3 13 13 C 1.46905 * 110.99990 * 273.53270 * 12 2 1 14 14 H 1.08998 * 109.46674 * 347.52041 * 13 12 2 15 15 C 1.52996 * 109.46819 * 107.51963 * 13 12 2 16 16 C 1.52997 * 109.47007 * 227.52296 * 13 12 2 17 17 H 1.09003 * 110.83526 * 300.69701 * 16 13 12 18 18 C 1.54705 * 110.94495 * 64.42090 * 16 13 12 19 19 O 1.43756 * 102.79720 * 92.79304 * 18 16 13 20 20 C 1.36140 * 109.28823 * 27.54962 * 19 18 16 21 21 C 1.39287 * 129.87835 * 161.43404 * 20 19 18 22 22 C 1.37929 * 120.24157 * 179.61436 * 21 20 19 23 23 C 1.38289 * 120.35325 * 359.97319 * 22 21 20 24 24 C 1.38352 * 119.76248 * 0.19835 * 23 22 21 25 25 C 1.37664 * 120.00671 * 0.02786 * 24 23 22 26 26 H 1.08997 * 109.47449 * 298.41843 * 1 2 3 27 27 H 1.09009 * 109.47025 * 58.41741 * 1 2 3 28 28 H 1.08999 * 109.47282 * 178.40904 * 1 2 3 29 29 H 0.96999 * 120.00254 * 179.97438 * 7 6 4 30 30 H 1.00905 * 111.00063 * 37.48688 * 12 2 1 31 31 H 1.09000 * 109.47065 * 66.47332 * 15 13 12 32 32 H 1.09001 * 109.47448 * 306.46422 * 15 13 12 33 33 H 1.09005 * 109.47068 * 186.46430 * 15 13 12 34 34 H 1.09004 * 110.75027 * 211.12006 * 18 16 13 35 35 H 1.08995 * 110.74841 * 334.28375 * 18 16 13 36 36 H 1.08000 * 119.87993 * 359.59142 * 21 20 19 37 37 H 1.08000 * 119.82579 * 179.97438 * 22 21 20 38 38 H 1.07999 * 120.12032 * 180.21510 * 23 22 21 39 39 H 1.07999 * 120.00751 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1475 -2.2863 -3.6038 10 1 1.1679 -1.5865 -4.8165 11 1 3.1474 -0.1857 -4.8160 12 7 2.0196 -0.6925 1.1994 13 6 2.1154 0.2306 2.3381 14 1 2.0149 1.2564 1.9836 15 6 0.9983 -0.0752 3.3379 16 6 3.4732 0.0580 3.0218 17 1 3.6022 -0.9653 3.3747 18 6 4.6256 0.4655 2.0736 19 8 4.8355 1.8488 2.4036 20 6 4.4650 2.0640 3.6958 21 6 4.7914 3.1097 4.5561 22 6 4.2919 3.1334 5.8415 23 6 3.4626 2.1207 6.2878 24 6 3.1365 1.0766 5.4407 25 6 3.6374 1.0480 4.1587 26 1 -0.3634 0.4890 0.9038 27 1 -0.3633 0.5383 -0.8755 28 1 -0.3634 -1.0272 -0.0285 29 1 0.7096 1.1619 -3.4844 30 1 1.4354 -1.4841 1.4238 31 1 1.1640 -1.0584 3.7783 32 1 0.0374 -0.0646 2.8235 33 1 0.9978 0.6797 4.1243 34 1 5.5211 -0.1209 2.2798 35 1 4.3254 0.3555 1.0315 36 1 5.4383 3.9046 4.2155 37 1 4.5497 3.9472 6.5031 38 1 3.0708 2.1448 7.2939 39 1 2.4889 0.2838 5.7849 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246039531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:25 Heat of formation + Delta-G solvation = -25.657781 kcal Electronic energy + Delta-G solvation = -19879.503370 eV Core-core repulsion = 16979.454615 eV Total energy + Delta-G solvation = -2900.048754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.18318 -38.54625 -38.14869 -35.48293 -33.50693 -31.42522 -30.76578 -29.89654 -28.55528 -27.16162 -24.66508 -23.27371 -22.92962 -22.24224 -21.43700 -18.49201 -17.91004 -17.64923 -16.88816 -16.80650 -16.41177 -15.79324 -15.55019 -15.07573 -14.61020 -14.32317 -14.24103 -14.07423 -13.63385 -13.40935 -13.38100 -13.05268 -12.86849 -12.78605 -12.62637 -12.42920 -12.23318 -12.14553 -11.93903 -11.76666 -11.65648 -11.47457 -10.90880 -10.48888 -9.80953 -9.13044 -8.89323 -8.09030 -6.20140 0.40272 0.48244 1.41595 1.43693 1.55550 2.43906 2.44413 2.81524 3.19742 3.37822 3.64176 3.79308 4.04265 4.09818 4.23237 4.27125 4.42330 4.44902 4.53268 4.62110 4.72439 4.73084 4.82020 4.86222 4.87517 5.00992 5.07125 5.18283 5.20132 5.26053 5.42748 5.47326 5.57530 5.60700 5.70527 5.79278 5.84228 6.27884 6.31573 6.64281 6.85733 6.97549 7.50305 8.96792 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030889 B = 0.005090 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.239425 B = 5499.177604 C = 5910.444542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.222 3.778 3 H -0.008 1.008 4 C -0.510 4.510 5 H 0.059 0.941 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.959 3.041 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.285 1.285 12 N -0.677 5.677 13 C 0.100 3.900 14 H 0.028 0.972 15 C -0.163 4.163 16 C -0.052 4.052 17 H 0.109 0.891 18 C 0.057 3.943 19 O -0.334 6.334 20 C 0.072 3.928 21 C -0.159 4.159 22 C -0.085 4.085 23 C -0.150 4.150 24 C -0.072 4.072 25 C -0.173 4.173 26 H 0.025 0.975 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.259 0.741 30 H 0.338 0.662 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.134 0.354 18.402 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.113 3.887 3 H 0.010 0.990 4 C -0.549 4.549 5 H 0.077 0.923 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.785 3.215 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.212 1.212 12 N -0.307 5.307 13 C -0.010 4.010 14 H 0.047 0.953 15 C -0.221 4.221 16 C -0.071 4.071 17 H 0.127 0.873 18 C -0.017 4.017 19 O -0.249 6.249 20 C 0.027 3.973 21 C -0.178 4.178 22 C -0.102 4.102 23 C -0.168 4.168 24 C -0.090 4.090 25 C -0.174 4.174 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.156 0.844 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.148 0.852 37 H 0.178 0.822 38 H 0.176 0.824 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.818 0.660 17.901 18.550 hybrid contribution -0.789 -0.080 -1.331 1.549 sum 4.029 0.581 16.570 17.063 Atomic orbital electron populations 1.22278 1.00019 0.99463 0.99681 1.18973 0.90009 0.91986 0.87709 0.99032 1.21503 1.30174 1.12354 0.90854 0.92268 1.25732 0.95535 0.95848 1.01999 1.70035 1.38323 1.24404 1.23799 0.85484 0.78031 0.78623 0.79325 1.18971 1.20688 1.21153 1.60555 1.57022 1.09935 1.03219 1.21335 0.93689 0.94880 0.91119 0.95345 1.22360 0.97360 1.03014 0.99353 1.21292 0.94874 0.99500 0.91412 0.87338 1.23867 0.98092 0.78420 1.01319 1.86786 1.82731 1.30130 1.25280 1.20178 0.95483 0.97193 0.84460 1.20576 1.04830 0.98730 0.93615 1.21235 0.95827 0.99325 0.93856 1.21440 1.00026 0.94148 1.01140 1.20647 0.98212 0.99322 0.90815 1.20932 1.01472 0.98384 0.96636 0.95633 0.92500 0.94579 0.93171 0.84396 0.90300 0.93283 0.91331 0.89514 0.88715 0.85171 0.82217 0.82373 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.47 8.90 71.98 0.64 -6.83 16 2 C 0.22 11.21 2.52 44.17 0.11 11.32 16 3 H -0.01 -0.48 7.34 -2.39 -0.02 -0.50 16 4 C -0.51 -28.18 8.84 25.60 0.23 -27.96 16 5 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 6 C 0.01 0.37 5.30 84.65 0.45 0.82 16 7 N -0.93 -54.34 11.34 21.44 0.24 -54.10 16 8 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 N -0.68 -27.41 5.50 -473.31 -2.60 -30.01 16 13 C 0.10 3.53 2.21 44.91 0.10 3.63 16 14 H 0.03 1.22 7.14 -2.39 -0.02 1.20 16 15 C -0.16 -4.51 8.59 71.98 0.62 -3.90 16 16 C -0.05 -1.60 2.87 -10.66 -0.03 -1.63 16 17 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 18 C 0.06 2.02 7.47 72.56 0.54 2.56 16 19 O -0.33 -12.72 11.10 -95.14 -1.06 -13.78 16 20 C 0.07 2.32 7.04 22.70 0.16 2.48 16 21 C -0.16 -4.13 10.06 22.45 0.23 -3.91 16 22 C -0.08 -1.64 10.02 22.21 0.22 -1.41 16 23 C -0.15 -2.72 10.07 22.31 0.22 -2.49 16 24 C -0.07 -1.58 8.69 22.16 0.19 -1.39 16 25 C -0.17 -4.96 5.16 -19.52 -0.10 -5.06 16 26 H 0.02 1.09 6.74 -2.39 -0.02 1.07 16 27 H 0.06 3.10 6.11 -2.38 -0.01 3.09 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 29 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.34 12.60 7.90 -89.69 -0.71 11.89 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.45 6.77 -2.39 -0.02 1.44 16 33 H 0.07 1.73 6.49 -2.38 -0.02 1.71 16 34 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.09 3.94 7.46 -2.39 -0.02 3.92 16 36 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.14 2.47 7.86 -2.91 -0.02 2.44 16 Total: -1.00 -64.45 313.21 2.52 -61.93 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.33 Total: 23.33 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 3.58 Total: -33.76 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -2.36 Total: -84.11 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -1.06 Total: -13.78 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -64.45 2.52 -61.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246039531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.268 kcal (2) G-P(sol) polarization free energy of solvation -64.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds