Wall clock time and date at job start Mon Mar 30 2020 06:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 5 5 H 1.07999 * 119.99988 * 120.00054 * 4 2 1 6 6 C 1.37885 * 120.00047 * 300.00234 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47021 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47081 * 119.99727 * 8 6 4 11 11 H 1.48501 * 109.47213 * 240.00099 * 8 6 4 12 12 N 1.46895 * 109.47075 * 239.99743 * 2 1 3 13 13 C 1.47008 * 111.00519 * 296.36468 * 12 2 1 14 14 C 1.53093 * 109.26015 * 182.39376 * 13 12 2 15 15 O 1.43024 * 109.25943 * 303.15184 * 14 13 12 16 16 C 1.43011 * 113.73745 * 58.66775 * 15 14 13 17 17 H 1.09006 * 109.50812 * 61.26575 * 16 15 14 18 18 C 1.50696 * 109.50708 * 181.39470 * 16 15 14 19 19 C 1.38240 * 119.99832 * 39.51647 * 18 16 15 20 20 C 1.38237 * 119.99697 * 179.76887 * 19 18 16 21 21 C 1.38230 * 120.00125 * 0.50104 * 20 19 18 22 22 C 1.38233 * 119.99904 * 359.74617 * 21 20 19 23 23 C 1.38228 * 120.00210 * 0.02562 * 22 21 20 24 24 C 1.47024 * 110.99863 * 60.00353 * 12 2 1 25 25 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 27 27 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 28 28 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.50451 * 302.33074 * 13 12 2 30 30 H 1.09000 * 109.50605 * 62.45761 * 13 12 2 31 31 H 1.09001 * 109.50650 * 183.21739 * 14 13 12 32 32 H 1.08998 * 109.54396 * 63.10381 * 14 13 12 33 33 H 1.07997 * 119.99751 * 359.97438 * 19 18 16 34 34 H 1.08004 * 119.99499 * 180.22609 * 20 19 18 35 35 H 1.08006 * 120.00217 * 179.73156 * 21 20 19 36 36 H 1.08004 * 120.00013 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.99889 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.50519 * 297.53752 * 24 12 2 39 39 H 1.08995 * 109.50390 * 57.62348 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9475 0.8331 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1474 -2.2863 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1677 -1.5866 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 1.6207 -2.1074 -1.1907 14 6 2.2007 -2.8032 -2.4248 15 8 1.7571 -2.1228 -3.6021 16 6 2.1290 -0.7425 -3.6439 17 1 3.2157 -0.6579 -3.6331 18 6 1.5869 -0.1132 -4.9012 19 6 0.3248 -0.4497 -5.3539 20 6 -0.1744 0.1312 -6.5047 21 6 0.5925 1.0408 -7.2084 22 6 1.8566 1.3735 -6.7585 23 6 2.3539 0.7961 -5.6053 24 6 1.5483 -0.0258 -2.4220 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7129 1.1642 3.4844 29 1 2.0019 -2.5874 -0.2894 30 1 0.5332 -2.1790 -1.2098 31 1 1.8603 -3.8384 -2.4527 32 1 3.2895 -2.7791 -2.3791 33 1 -0.2724 -1.1640 -4.8066 34 1 -1.1619 -0.1290 -6.8563 35 1 0.2042 1.4914 -8.1099 36 1 2.4559 2.0838 -7.3086 37 1 3.3417 1.0558 -5.2541 38 1 0.4597 -0.0642 -2.4609 39 1 1.8760 1.0137 -2.4191 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249748228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:22 Heat of formation + Delta-G solvation = -11.432761 kcal Electronic energy + Delta-G solvation = -19850.483810 eV Core-core repulsion = 16951.051899 eV Total energy + Delta-G solvation = -2899.431911 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.79403 -38.39427 -35.82080 -32.70967 -32.46021 -30.83639 -29.40343 -28.90892 -25.60576 -25.27567 -23.59479 -22.58701 -21.79165 -20.48826 -19.00685 -16.99588 -16.35529 -15.81576 -15.69259 -15.19190 -14.62738 -14.29162 -14.16839 -13.95425 -13.87734 -13.28870 -12.99457 -12.81384 -12.55446 -12.07524 -11.77800 -11.32790 -11.12446 -11.06571 -10.89251 -10.79579 -10.71112 -10.52557 -10.27117 -9.99835 -9.81562 -9.26967 -8.88866 -8.85308 -8.54940 -8.43104 -7.23625 -6.05073 -4.09570 1.37690 1.47319 3.27353 3.35452 3.39135 3.77232 4.11221 4.37549 4.79338 4.96242 5.00962 5.11907 5.21976 5.27160 5.42520 5.50271 5.59359 5.65552 5.73232 5.82046 5.92032 6.02004 6.06815 6.12802 6.34860 6.48344 6.51714 6.56549 6.58794 6.72504 6.78567 6.83948 7.04741 7.08842 7.40911 7.55719 7.67516 7.76433 8.03677 8.31464 8.52453 8.95832 9.55755 11.02104 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.035855 B = 0.004719 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.742474 B = 5931.557174 C = 6235.940128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.530 5.530 13 C 0.024 3.976 14 C 0.063 3.937 15 O -0.385 6.385 16 C 0.134 3.866 17 H 0.070 0.930 18 C -0.072 4.072 19 C -0.092 4.092 20 C -0.125 4.125 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.109 4.109 24 C 0.030 3.970 25 H 0.028 0.972 26 H 0.088 0.912 27 H 0.009 0.991 28 H 0.260 0.740 29 H 0.094 0.906 30 H 0.035 0.965 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.039 0.961 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.125 -1.714 -15.476 15.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.105 3.895 3 H 0.059 0.941 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.254 5.254 13 C -0.104 4.104 14 C -0.014 4.014 15 O -0.305 6.305 16 C 0.076 3.924 17 H 0.088 0.912 18 C -0.073 4.073 19 C -0.110 4.110 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.127 4.127 24 C -0.099 4.099 25 H 0.047 0.953 26 H 0.107 0.893 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.053 0.947 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.058 0.942 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.471 -1.664 -15.457 15.554 hybrid contribution -0.566 -0.248 1.170 1.324 sum -0.095 -1.913 -14.287 14.415 Atomic orbital electron populations 1.22389 1.00779 0.99300 1.00615 1.19315 0.89846 0.94653 0.85679 0.94102 1.21155 1.30790 1.12571 0.89691 0.91819 1.24935 0.95154 0.95078 0.99041 1.69903 1.37113 1.22786 1.23364 0.86464 0.78548 0.79649 0.82887 1.19728 1.21011 1.21152 1.62598 1.59091 1.01470 1.02277 1.22648 0.98330 0.91107 0.98326 1.22764 0.98759 0.95392 0.84477 1.87893 1.79089 1.21690 1.41785 1.20920 0.98085 0.81859 0.91528 0.91202 1.19704 0.94746 0.97110 0.95699 1.21046 0.95247 0.98737 0.95971 1.21152 0.99818 0.97566 0.95807 1.21121 0.94809 0.98425 0.99901 1.21059 0.96134 1.00305 0.96705 1.20993 0.99755 0.96982 0.94990 1.22640 0.98181 0.98572 0.90513 0.95254 0.89335 0.97166 0.93004 0.88744 0.94702 0.89256 0.92824 0.85682 0.86233 0.86382 0.86127 0.85872 0.94249 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.27 37.16 0.31 -3.87 16 2 C 0.21 5.28 2.42 -68.87 -0.17 5.12 16 3 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.50 -13.52 7.90 -34.44 -0.27 -13.80 16 5 H 0.06 1.70 6.42 -52.49 -0.34 1.36 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.21 11.33 55.43 0.63 -24.58 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.53 -11.38 4.75 -227.73 -1.08 -12.46 16 13 C 0.02 0.48 4.98 -3.72 -0.02 0.46 16 14 C 0.06 1.02 7.01 37.21 0.26 1.29 16 15 O -0.39 -6.60 9.78 -35.23 -0.34 -6.94 16 16 C 0.13 2.21 3.01 -27.84 -0.08 2.13 16 17 H 0.07 1.13 8.01 -51.93 -0.42 0.72 16 18 C -0.07 -1.07 4.98 -104.62 -0.52 -1.59 16 19 C -0.09 -1.30 9.36 -39.58 -0.37 -1.67 16 20 C -0.13 -1.51 10.05 -39.58 -0.40 -1.90 16 21 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 22 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 23 C -0.11 -1.41 9.67 -39.59 -0.38 -1.79 16 24 C 0.03 0.56 4.46 -3.71 -0.02 0.55 16 25 H 0.03 0.69 6.54 -51.93 -0.34 0.35 16 26 H 0.09 2.37 6.08 -51.93 -0.32 2.06 16 27 H 0.01 0.22 6.46 -51.93 -0.34 -0.12 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.09 1.95 6.18 -51.93 -0.32 1.62 16 30 H 0.03 0.71 6.52 -51.93 -0.34 0.37 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.13 1.82 7.76 -52.49 -0.41 1.41 16 34 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 37 H 0.12 1.40 8.04 -52.48 -0.42 0.98 16 38 H 0.04 0.78 6.44 -51.93 -0.33 0.45 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 307.72 15.07 4.64 4.64 Total: -1.00 -28.75 307.72 -9.39 -38.14 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.66 Total: 2.33 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.55 Total: -17.14 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.45 Total: -37.05 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.34 Total: -6.94 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.75 -9.39 -38.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249748228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.712 kcal (2) G-P(sol) polarization free energy of solvation -28.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds