Wall clock time and date at job start Mon Mar 30 2020 06:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 5 5 H 1.07999 * 119.99988 * 120.00054 * 4 2 1 6 6 C 1.37885 * 120.00047 * 300.00234 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47021 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47081 * 119.99727 * 8 6 4 11 11 H 1.48501 * 109.47213 * 240.00099 * 8 6 4 12 12 N 1.46895 * 109.47075 * 239.99743 * 2 1 3 13 13 C 1.47008 * 111.00519 * 296.36468 * 12 2 1 14 14 C 1.53093 * 109.26015 * 182.39376 * 13 12 2 15 15 O 1.43024 * 109.25943 * 303.15184 * 14 13 12 16 16 C 1.43011 * 113.73745 * 58.66775 * 15 14 13 17 17 H 1.09006 * 109.50812 * 61.26575 * 16 15 14 18 18 C 1.50696 * 109.50708 * 181.39470 * 16 15 14 19 19 C 1.38240 * 119.99832 * 39.51647 * 18 16 15 20 20 C 1.38237 * 119.99697 * 179.76887 * 19 18 16 21 21 C 1.38230 * 120.00125 * 0.50104 * 20 19 18 22 22 C 1.38233 * 119.99904 * 359.74617 * 21 20 19 23 23 C 1.38228 * 120.00210 * 0.02562 * 22 21 20 24 24 C 1.47024 * 110.99863 * 60.00353 * 12 2 1 25 25 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 27 27 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 28 28 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.50451 * 302.33074 * 13 12 2 30 30 H 1.09000 * 109.50605 * 62.45761 * 13 12 2 31 31 H 1.09001 * 109.50650 * 183.21739 * 14 13 12 32 32 H 1.08998 * 109.54396 * 63.10381 * 14 13 12 33 33 H 1.07997 * 119.99751 * 359.97438 * 19 18 16 34 34 H 1.08004 * 119.99499 * 180.22609 * 20 19 18 35 35 H 1.08006 * 120.00217 * 179.73156 * 21 20 19 36 36 H 1.08004 * 120.00013 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.99889 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.50519 * 297.53752 * 24 12 2 39 39 H 1.08995 * 109.50390 * 57.62348 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9475 0.8331 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1474 -2.2863 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1677 -1.5866 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 1.6207 -2.1074 -1.1907 14 6 2.2007 -2.8032 -2.4248 15 8 1.7571 -2.1228 -3.6021 16 6 2.1290 -0.7425 -3.6439 17 1 3.2157 -0.6579 -3.6331 18 6 1.5869 -0.1132 -4.9012 19 6 0.3248 -0.4497 -5.3539 20 6 -0.1744 0.1312 -6.5047 21 6 0.5925 1.0408 -7.2084 22 6 1.8566 1.3735 -6.7585 23 6 2.3539 0.7961 -5.6053 24 6 1.5483 -0.0258 -2.4220 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7129 1.1642 3.4844 29 1 2.0019 -2.5874 -0.2894 30 1 0.5332 -2.1790 -1.2098 31 1 1.8603 -3.8384 -2.4527 32 1 3.2895 -2.7791 -2.3791 33 1 -0.2724 -1.1640 -4.8066 34 1 -1.1619 -0.1290 -6.8563 35 1 0.2042 1.4914 -8.1099 36 1 2.4559 2.0838 -7.3086 37 1 3.3417 1.0558 -5.2541 38 1 0.4597 -0.0642 -2.4609 39 1 1.8760 1.0137 -2.4191 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249748228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:22 Heat of formation + Delta-G solvation = -28.517418 kcal Electronic energy + Delta-G solvation = -19851.224657 eV Core-core repulsion = 16951.051899 eV Total energy + Delta-G solvation = -2900.172758 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.08893 -39.58451 -37.48632 -34.59530 -33.73074 -31.77687 -31.13553 -30.31679 -27.49100 -26.96567 -25.04558 -23.67909 -23.13378 -21.83280 -20.68506 -18.35755 -18.01929 -17.24961 -17.11365 -16.36727 -16.33365 -15.85674 -15.57186 -15.36438 -15.10124 -14.71990 -14.43049 -14.20469 -13.81483 -13.56206 -13.35853 -12.99726 -12.78076 -12.71552 -12.62797 -12.38966 -12.09309 -11.96090 -11.90154 -11.86528 -11.32818 -10.96067 -10.60110 -10.52338 -9.79682 -9.63538 -8.99722 -8.13672 -6.25343 0.40216 0.52853 1.41345 1.43304 1.54810 2.41103 2.68501 2.95413 3.15779 3.24212 3.86627 3.96654 4.04017 4.15392 4.23260 4.25245 4.31301 4.37759 4.48857 4.61349 4.65545 4.67943 4.73510 4.81848 4.88412 4.96987 5.02566 5.08522 5.13389 5.19807 5.47724 5.58104 5.63279 5.65345 5.68738 5.71307 6.08378 6.12219 6.21630 6.36767 6.61772 6.87178 7.44085 8.93244 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.035855 B = 0.004719 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.742474 B = 5931.557174 C = 6235.940128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.007 0.993 4 C -0.517 4.517 5 H 0.063 0.937 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.962 3.038 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.537 5.537 13 C 0.027 3.973 14 C 0.069 3.931 15 O -0.390 6.390 16 C 0.143 3.857 17 H 0.073 0.927 18 C -0.096 4.096 19 C -0.111 4.111 20 C -0.129 4.129 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.119 4.119 24 C 0.035 3.965 25 H 0.028 0.972 26 H 0.063 0.937 27 H 0.021 0.979 28 H 0.261 0.739 29 H 0.082 0.918 30 H 0.023 0.977 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.141 0.859 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.134 0.866 38 H 0.027 0.973 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 -2.193 -17.154 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.025 0.975 4 C -0.555 4.555 5 H 0.081 0.919 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.189 1.189 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.261 5.261 13 C -0.102 4.102 14 C -0.007 4.007 15 O -0.309 6.309 16 C 0.085 3.915 17 H 0.090 0.910 18 C -0.096 4.096 19 C -0.130 4.130 20 C -0.147 4.147 21 C -0.138 4.138 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.093 4.093 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.041 0.959 31 H 0.137 0.863 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.159 0.841 35 H 0.168 0.832 36 H 0.168 0.832 37 H 0.151 0.849 38 H 0.045 0.955 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.928 -2.153 -17.154 17.314 hybrid contribution -0.728 -0.046 1.605 1.764 sum 0.199 -2.199 -15.549 15.705 Atomic orbital electron populations 1.22179 1.00505 0.98950 0.99869 1.19073 0.89913 0.93115 0.87098 0.97537 1.21412 1.30839 1.12636 0.90641 0.91911 1.25728 0.95285 0.95739 1.01971 1.70032 1.38028 1.24030 1.24043 0.85443 0.78047 0.78664 0.79097 1.18881 1.20774 1.20754 1.62499 1.59195 1.02452 1.01971 1.22663 0.97705 0.90054 0.99735 1.22810 0.99063 0.96274 0.82575 1.87908 1.79233 1.21981 1.41758 1.20840 0.98046 0.81360 0.91250 0.90953 1.19662 0.95634 0.98627 0.95682 1.21083 0.95236 0.99470 0.97177 1.21438 1.00917 0.97374 0.94992 1.21545 0.94428 0.97366 1.00475 1.21446 0.96564 1.00080 0.95985 1.21215 1.00204 0.96660 0.95582 1.22643 0.97452 0.98627 0.90625 0.95249 0.91842 0.95992 0.92937 0.89940 0.95914 0.86268 0.92059 0.86972 0.84133 0.83205 0.83211 0.84853 0.95532 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.83 8.27 71.98 0.60 -7.23 16 2 C 0.22 11.12 2.42 44.17 0.11 11.22 16 3 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 4 C -0.52 -28.25 7.90 25.60 0.20 -28.05 16 5 H 0.06 3.37 6.42 -2.91 -0.02 3.36 16 6 C 0.01 0.62 5.30 84.66 0.45 1.07 16 7 N -0.92 -53.13 11.33 21.45 0.24 -52.89 16 8 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 9 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 N -0.54 -23.52 4.75 -874.40 -4.15 -27.67 16 13 C 0.03 1.05 4.98 86.31 0.43 1.48 16 14 C 0.07 2.18 7.01 72.01 0.50 2.68 16 15 O -0.39 -13.04 9.78 -148.98 -1.46 -14.49 16 16 C 0.14 4.68 3.01 29.88 0.09 4.77 16 17 H 0.07 2.31 8.01 -2.38 -0.02 2.29 16 18 C -0.10 -2.77 4.98 -19.87 -0.10 -2.86 16 19 C -0.11 -3.09 9.36 22.27 0.21 -2.88 16 20 C -0.13 -2.84 10.05 22.27 0.22 -2.61 16 21 C -0.12 -2.26 10.05 22.27 0.22 -2.03 16 22 C -0.12 -2.41 10.05 22.27 0.22 -2.18 16 23 C -0.12 -2.87 9.67 22.27 0.22 -2.65 16 24 C 0.04 1.36 4.46 86.31 0.38 1.74 16 25 H 0.03 1.42 6.54 -2.38 -0.02 1.41 16 26 H 0.06 3.51 6.08 -2.39 -0.01 3.50 16 27 H 0.02 1.00 6.46 -2.39 -0.02 0.98 16 28 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.08 3.42 6.18 -2.39 -0.01 3.40 16 30 H 0.02 0.94 6.52 -2.39 -0.02 0.92 16 31 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.11 3.30 7.76 -2.91 -0.02 3.27 16 34 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.13 2.84 8.04 -2.91 -0.02 2.81 16 38 H 0.03 1.09 6.44 -2.39 -0.02 1.07 16 39 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -62.37 307.72 1.45 -60.93 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 1.03 Total: 16.29 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 3.76 Total: -27.54 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -3.91 Total: -80.56 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -1.46 Total: -14.49 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -62.37 1.45 -60.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249748228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.409 kcal (2) G-P(sol) polarization free energy of solvation -62.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds