Wall clock time and date at job start Mon Mar 30 2020 06:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99600 * 2 1 4 4 H 1.09004 * 109.47089 * 296.04235 * 3 2 1 5 5 C 1.50706 * 109.47173 * 176.04760 * 3 2 1 6 6 H 1.07998 * 119.99267 * 331.77368 * 5 3 2 7 7 C 1.37874 * 120.00060 * 151.77597 * 5 3 2 8 8 N 1.31513 * 119.99565 * 180.73397 * 7 5 3 9 9 Si 1.86802 * 120.00238 * 0.73616 * 7 5 3 10 10 H 1.48499 * 109.46970 * 87.95781 * 9 7 5 11 11 H 1.48499 * 109.47046 * 207.96047 * 9 7 5 12 12 H 1.48501 * 109.46772 * 327.95785 * 9 7 5 13 13 C 1.50693 * 109.47671 * 56.04563 * 3 2 1 14 14 C 1.38242 * 119.99817 * 47.28167 * 13 3 2 15 15 C 1.38237 * 119.99922 * 179.76455 * 14 13 3 16 16 C 1.38236 * 119.99740 * 0.49654 * 15 14 13 17 17 C 1.38235 * 120.00407 * 359.78400 * 16 15 14 18 18 C 1.38232 * 119.99761 * 359.95807 * 17 16 15 19 19 C 1.46893 * 111.00308 * 236.04840 * 2 1 3 20 20 H 1.08998 * 110.75613 * 181.30843 * 19 2 1 21 21 C 1.55306 * 110.84562 * 304.77491 * 19 2 1 22 22 C 1.55209 * 100.82928 * 152.18034 * 21 19 2 23 23 O 1.43643 * 105.25630 * 323.81864 * 22 21 19 24 24 C 1.43237 * 109.97511 * 24.28418 * 23 22 21 25 25 H 1.09001 * 109.47116 * 66.56650 * 1 2 3 26 26 H 1.08999 * 109.46730 * 186.56901 * 1 2 3 27 27 H 1.08994 * 109.47036 * 306.56857 * 1 2 3 28 28 H 0.97004 * 120.00212 * 180.02562 * 8 7 5 29 29 H 1.07997 * 119.99755 * 0.02562 * 14 13 3 30 30 H 1.07998 * 119.99922 * 180.25782 * 15 14 13 31 31 H 1.08008 * 119.99453 * 179.76354 * 16 15 14 32 32 H 1.07998 * 119.99982 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.00117 * 180.02562 * 18 17 16 34 34 H 1.09005 * 111.12602 * 270.24321 * 21 19 2 35 35 H 1.09005 * 111.12558 * 34.40483 * 21 19 2 36 36 H 1.09003 * 110.37050 * 204.80061 * 22 21 19 37 37 H 1.08996 * 110.21187 * 82.75163 * 22 21 19 38 38 H 1.09005 * 109.83199 * 238.77467 * 24 23 22 39 39 H 1.08996 * 109.83068 * 117.79932 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.7043 1.8724 -0.9234 5 6 3.4987 1.3326 0.0979 6 1 3.9863 0.5060 0.5933 7 6 4.2515 2.3522 -0.4448 8 7 5.5640 2.3111 -0.3719 9 14 3.4073 3.7922 -1.2834 10 1 3.0929 4.8368 -0.2758 11 1 4.3077 4.3588 -2.3195 12 1 2.1502 3.3256 -1.9215 13 6 1.4346 2.1249 1.1784 14 6 1.4430 1.5483 2.4349 15 6 0.9330 2.2414 3.5168 16 6 0.4052 3.5068 3.3405 17 6 0.3916 4.0810 2.0831 18 6 0.9064 3.3902 1.0022 19 6 1.9955 -0.7659 -1.1375 20 1 3.0852 -0.7826 -1.1207 21 6 1.4208 -2.2087 -1.1458 22 6 1.4744 -2.5352 -2.6622 23 8 1.1612 -1.3005 -3.3260 24 6 1.4754 -0.1932 -2.4735 25 1 -0.3633 0.4087 -0.9429 26 1 -0.3633 -1.0209 0.1176 27 1 -0.3633 0.6122 0.8253 28 1 6.0937 3.0286 -0.7534 29 1 1.8518 0.5582 2.5719 30 1 0.9433 1.7926 4.4991 31 1 0.0033 4.0467 4.1852 32 1 -0.0211 5.0695 1.9454 33 1 0.8961 3.8389 0.0199 34 1 2.0528 -2.8866 -0.5721 35 1 0.3949 -2.2250 -0.7778 36 1 0.7363 -3.2972 -2.9126 37 1 2.4733 -2.8713 -2.9400 38 1 0.5801 0.4030 -2.2966 39 1 2.2459 0.4231 -2.9366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250359207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:42 Heat of formation + Delta-G solvation = -1.097918 kcal Electronic energy + Delta-G solvation = -20506.847953 eV Core-core repulsion = 17607.864194 eV Total energy + Delta-G solvation = -2898.983759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.65499 -38.50385 -36.01393 -32.84900 -31.44620 -30.26496 -29.92875 -28.13195 -27.55136 -24.51733 -22.99786 -22.04587 -21.91615 -20.30949 -18.96562 -17.08884 -16.60414 -16.07360 -15.83358 -14.86008 -14.68071 -14.37840 -14.33019 -13.64294 -13.42584 -13.24246 -12.84503 -12.77268 -12.41020 -12.19516 -11.95635 -11.54910 -11.29169 -11.18742 -11.01797 -10.91174 -10.75365 -10.48332 -10.10910 -10.03732 -9.92420 -9.51036 -9.12898 -8.75089 -8.24149 -7.86908 -7.44890 -6.23405 -4.23238 2.05351 2.11707 3.18426 3.22969 3.27914 4.15120 4.26622 4.46756 4.76092 5.00231 5.08174 5.32201 5.39440 5.49751 5.53826 5.57031 5.61823 5.67703 5.80862 5.88494 5.93797 5.97527 6.09220 6.20512 6.20812 6.25850 6.38393 6.44295 6.54625 6.66497 6.78913 6.82062 7.09631 7.14437 7.26948 7.36337 7.44837 7.72362 7.81218 7.91814 8.46644 8.85598 9.37721 10.88180 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.009208 C = 0.007055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.344199 B = 3039.964603 C = 3967.701742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.512 5.512 3 C 0.206 3.794 4 H 0.022 0.978 5 C -0.497 4.497 6 H 0.087 0.913 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.859 3.141 10 H -0.267 1.267 11 H -0.287 1.287 12 H -0.263 1.263 13 C -0.035 4.035 14 C -0.090 4.090 15 C -0.128 4.128 16 C -0.147 4.147 17 C -0.124 4.124 18 C -0.142 4.142 19 C 0.071 3.929 20 H 0.116 0.884 21 C -0.156 4.156 22 C 0.051 3.949 23 O -0.390 6.390 24 C 0.016 3.984 25 H 0.021 0.979 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.267 0.733 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.916 -3.776 1.255 10.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.235 5.235 3 C 0.099 3.901 4 H 0.039 0.961 5 C -0.535 4.535 6 H 0.105 0.895 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.686 3.314 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.188 1.188 13 C -0.036 4.036 14 C -0.109 4.109 15 C -0.146 4.146 16 C -0.165 4.165 17 C -0.142 4.142 18 C -0.160 4.160 19 C -0.038 4.038 20 H 0.134 0.866 21 C -0.193 4.193 22 C -0.026 4.026 23 O -0.309 6.309 24 C -0.062 4.062 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.644 -3.884 1.433 10.495 hybrid contribution -0.401 1.507 -0.931 1.816 sum -10.045 -2.377 0.502 10.335 Atomic orbital electron populations 1.22564 0.89979 1.01196 1.00166 1.62119 1.05298 1.15864 1.40214 1.18949 0.95975 0.84105 0.91041 0.96063 1.20788 0.86831 1.08755 1.37118 0.89542 1.24920 0.94670 0.97488 0.95282 1.69859 1.04420 1.33187 1.44898 0.87185 0.79810 0.84122 0.80247 1.19204 1.21355 1.18818 1.20461 0.92015 0.94105 0.97045 1.20954 0.98079 1.00217 0.91607 1.21090 0.99986 0.95129 0.98423 1.20869 1.02824 0.96223 0.96603 1.20905 1.00945 0.99144 0.93172 1.21000 1.00802 0.95863 0.98380 1.23147 1.02052 0.91281 0.87334 0.86640 1.23473 1.02471 0.97426 0.95962 1.23368 1.00175 0.87444 0.91642 1.88330 1.86500 1.14517 1.41561 1.23911 1.00207 0.89632 0.92434 0.96057 0.92032 0.91440 0.92322 0.85643 0.87094 0.87331 0.87313 0.87696 0.89775 0.90269 0.90455 0.92381 0.91586 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 8.60 60.07 0.52 0.67 16 2 N -0.51 -9.87 4.25 -227.37 -0.97 -10.83 16 3 C 0.21 4.56 1.13 -70.02 -0.08 4.48 16 4 H 0.02 0.51 4.25 -51.93 -0.22 0.28 16 5 C -0.50 -12.94 7.55 -34.44 -0.26 -13.20 16 6 H 0.09 2.48 8.04 -52.49 -0.42 2.05 16 7 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 8 N -0.89 -25.85 13.96 55.43 0.77 -25.08 16 9 Si 0.86 20.73 24.65 -169.99 -4.19 16.54 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.26 -6.04 6.03 56.52 0.34 -5.69 16 13 C -0.04 -0.74 3.23 -104.62 -0.34 -1.08 16 14 C -0.09 -1.76 8.55 -39.58 -0.34 -2.10 16 15 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 16 C -0.15 -2.41 10.05 -39.58 -0.40 -2.81 16 17 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 18 C -0.14 -2.86 8.50 -39.58 -0.34 -3.20 16 19 C 0.07 1.31 2.85 -65.77 -0.19 1.13 16 20 H 0.12 2.41 7.07 -51.93 -0.37 2.04 16 21 C -0.16 -2.27 6.62 -24.34 -0.16 -2.43 16 22 C 0.05 0.72 7.78 38.33 0.30 1.02 16 23 O -0.39 -6.92 11.36 -35.23 -0.40 -7.32 16 24 C 0.02 0.30 6.26 37.88 0.24 0.54 16 25 H 0.02 0.36 5.84 -51.93 -0.30 0.05 16 26 H 0.06 0.90 6.03 -51.93 -0.31 0.59 16 27 H 0.07 1.14 6.27 -51.93 -0.33 0.82 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.13 2.47 7.94 -52.49 -0.42 2.05 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 31 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.10 2.12 6.25 -52.49 -0.33 1.79 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.10 5.69 -51.93 -0.30 0.80 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.24 5.49 -51.93 -0.29 0.95 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 299.09 15.07 4.51 4.51 Total: -1.00 -28.44 299.09 -7.65 -36.09 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.43 Total: 6.14 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -1.94 Total: -20.04 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.19 Total: -35.91 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.40 Total: -7.32 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.19 Total: 16.54 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.44 -7.65 -36.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250359207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.988 kcal (2) G-P(sol) polarization free energy of solvation -28.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds