Wall clock time and date at job start Mon Mar 30 2020 06:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99600 * 2 1 4 4 H 1.09004 * 109.47089 * 296.04235 * 3 2 1 5 5 C 1.50706 * 109.47173 * 176.04760 * 3 2 1 6 6 H 1.07998 * 119.99267 * 331.77368 * 5 3 2 7 7 C 1.37874 * 120.00060 * 151.77597 * 5 3 2 8 8 N 1.31513 * 119.99565 * 180.73397 * 7 5 3 9 9 Si 1.86802 * 120.00238 * 0.73616 * 7 5 3 10 10 H 1.48499 * 109.46970 * 87.95781 * 9 7 5 11 11 H 1.48499 * 109.47046 * 207.96047 * 9 7 5 12 12 H 1.48501 * 109.46772 * 327.95785 * 9 7 5 13 13 C 1.50693 * 109.47671 * 56.04563 * 3 2 1 14 14 C 1.38242 * 119.99817 * 47.28167 * 13 3 2 15 15 C 1.38237 * 119.99922 * 179.76455 * 14 13 3 16 16 C 1.38236 * 119.99740 * 0.49654 * 15 14 13 17 17 C 1.38235 * 120.00407 * 359.78400 * 16 15 14 18 18 C 1.38232 * 119.99761 * 359.95807 * 17 16 15 19 19 C 1.46893 * 111.00308 * 236.04840 * 2 1 3 20 20 H 1.08998 * 110.75613 * 181.30843 * 19 2 1 21 21 C 1.55306 * 110.84562 * 304.77491 * 19 2 1 22 22 C 1.55209 * 100.82928 * 152.18034 * 21 19 2 23 23 O 1.43643 * 105.25630 * 323.81864 * 22 21 19 24 24 C 1.43237 * 109.97511 * 24.28418 * 23 22 21 25 25 H 1.09001 * 109.47116 * 66.56650 * 1 2 3 26 26 H 1.08999 * 109.46730 * 186.56901 * 1 2 3 27 27 H 1.08994 * 109.47036 * 306.56857 * 1 2 3 28 28 H 0.97004 * 120.00212 * 180.02562 * 8 7 5 29 29 H 1.07997 * 119.99755 * 0.02562 * 14 13 3 30 30 H 1.07998 * 119.99922 * 180.25782 * 15 14 13 31 31 H 1.08008 * 119.99453 * 179.76354 * 16 15 14 32 32 H 1.07998 * 119.99982 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.00117 * 180.02562 * 18 17 16 34 34 H 1.09005 * 111.12602 * 270.24321 * 21 19 2 35 35 H 1.09005 * 111.12558 * 34.40483 * 21 19 2 36 36 H 1.09003 * 110.37050 * 204.80061 * 22 21 19 37 37 H 1.08996 * 110.21187 * 82.75163 * 22 21 19 38 38 H 1.09005 * 109.83199 * 238.77467 * 24 23 22 39 39 H 1.08996 * 109.83068 * 117.79932 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.7043 1.8724 -0.9234 5 6 3.4987 1.3326 0.0979 6 1 3.9863 0.5060 0.5933 7 6 4.2515 2.3522 -0.4448 8 7 5.5640 2.3111 -0.3719 9 14 3.4073 3.7922 -1.2834 10 1 3.0929 4.8368 -0.2758 11 1 4.3077 4.3588 -2.3195 12 1 2.1502 3.3256 -1.9215 13 6 1.4346 2.1249 1.1784 14 6 1.4430 1.5483 2.4349 15 6 0.9330 2.2414 3.5168 16 6 0.4052 3.5068 3.3405 17 6 0.3916 4.0810 2.0831 18 6 0.9064 3.3902 1.0022 19 6 1.9955 -0.7659 -1.1375 20 1 3.0852 -0.7826 -1.1207 21 6 1.4208 -2.2087 -1.1458 22 6 1.4744 -2.5352 -2.6622 23 8 1.1612 -1.3005 -3.3260 24 6 1.4754 -0.1932 -2.4735 25 1 -0.3633 0.4087 -0.9429 26 1 -0.3633 -1.0209 0.1176 27 1 -0.3633 0.6122 0.8253 28 1 6.0937 3.0286 -0.7534 29 1 1.8518 0.5582 2.5719 30 1 0.9433 1.7926 4.4991 31 1 0.0033 4.0467 4.1852 32 1 -0.0211 5.0695 1.9454 33 1 0.8961 3.8389 0.0199 34 1 2.0528 -2.8866 -0.5721 35 1 0.3949 -2.2250 -0.7778 36 1 0.7363 -3.2972 -2.9126 37 1 2.4733 -2.8713 -2.9400 38 1 0.5801 0.4030 -2.2966 39 1 2.2459 0.4231 -2.9366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250359207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:42 Heat of formation + Delta-G solvation = -19.946981 kcal Electronic energy + Delta-G solvation = -20507.665310 eV Core-core repulsion = 17607.864194 eV Total energy + Delta-G solvation = -2899.801116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.11075 -39.91916 -37.50053 -34.78352 -33.02992 -31.67461 -31.26652 -29.67385 -29.14099 -26.12710 -24.65660 -23.34811 -23.32701 -21.75242 -20.55998 -19.02791 -18.04281 -17.51885 -17.22709 -16.59511 -16.17169 -15.89669 -15.77881 -15.07540 -14.94573 -14.72272 -14.59075 -14.26035 -13.98974 -13.63341 -13.47770 -13.02630 -12.88198 -12.63024 -12.51537 -12.34454 -12.23611 -12.03772 -11.92880 -11.57999 -11.43593 -11.35785 -10.81643 -10.50504 -9.66635 -9.36162 -9.01921 -8.35183 -6.36450 0.61807 0.69119 1.23812 1.25807 1.31415 2.24259 2.76388 2.95445 3.12914 3.31861 3.66865 3.91805 4.08366 4.12872 4.19461 4.23055 4.29432 4.34340 4.40745 4.50918 4.55303 4.68693 4.76095 4.80961 4.84162 4.92561 4.99146 5.00413 5.14552 5.21741 5.30492 5.34265 5.46349 5.70490 5.75441 5.91450 5.96400 6.02155 6.25295 6.35894 6.61206 6.70752 7.27864 8.80354 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.009208 C = 0.007055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.344199 B = 3039.964603 C = 3967.701742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.516 5.516 3 C 0.215 3.785 4 H 0.008 0.992 5 C -0.483 4.483 6 H 0.046 0.954 7 C 0.028 3.972 8 N -0.937 5.937 9 Si 0.910 3.090 10 H -0.260 1.260 11 H -0.290 1.290 12 H -0.249 1.249 13 C -0.059 4.059 14 C -0.106 4.106 15 C -0.124 4.124 16 C -0.137 4.137 17 C -0.124 4.124 18 C -0.163 4.163 19 C 0.066 3.934 20 H 0.079 0.921 21 C -0.142 4.142 22 C 0.046 3.954 23 O -0.402 6.402 24 C 0.024 3.976 25 H 0.020 0.980 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.266 0.734 29 H 0.114 0.886 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.799 -3.679 2.447 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.239 5.239 3 C 0.108 3.892 4 H 0.025 0.975 5 C -0.522 4.522 6 H 0.065 0.935 7 C -0.171 4.171 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.184 1.184 11 H -0.217 1.217 12 H -0.173 1.173 13 C -0.061 4.061 14 C -0.124 4.124 15 C -0.142 4.142 16 C -0.155 4.155 17 C -0.142 4.142 18 C -0.182 4.182 19 C -0.044 4.044 20 H 0.097 0.903 21 C -0.179 4.179 22 C -0.030 4.030 23 O -0.321 6.321 24 C -0.054 4.054 25 H 0.039 0.961 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.132 0.868 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.156 0.844 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.130 0.870 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.558 -3.806 2.627 13.382 hybrid contribution 0.443 1.377 -1.207 1.884 sum -12.115 -2.429 1.420 12.438 Atomic orbital electron populations 1.22588 0.87838 1.02845 1.00069 1.62046 1.07128 1.14179 1.40575 1.18683 0.93413 0.85835 0.91312 0.97486 1.20885 0.89315 1.06824 1.35144 0.93546 1.25578 0.95031 1.00081 0.96402 1.69994 1.05925 1.34397 1.47376 0.86361 0.79295 0.81374 0.79434 1.18437 1.21700 1.17344 1.20319 0.94147 0.94739 0.96846 1.20973 0.99104 1.00280 0.92071 1.21446 0.98466 0.95363 0.98895 1.21340 1.01032 0.95758 0.97336 1.21283 0.99903 1.00187 0.92838 1.21120 1.02027 0.95782 0.99234 1.23083 1.00233 0.93930 0.87176 0.90299 1.23435 1.03201 0.94550 0.96716 1.23635 1.01725 0.86663 0.90938 1.88312 1.86481 1.15338 1.42017 1.23707 0.99344 0.90005 0.92380 0.96115 0.89403 0.91513 0.92518 0.86786 0.84010 0.83364 0.84390 0.88379 0.88486 0.88713 0.87040 0.91897 0.91451 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.45 8.60 127.69 1.10 1.55 16 2 N -0.52 -20.03 4.25 -873.26 -3.71 -23.74 16 3 C 0.21 9.73 1.13 43.42 0.05 9.78 16 4 H 0.01 0.36 4.25 -2.38 -0.01 0.35 16 5 C -0.48 -26.43 7.55 25.60 0.19 -26.24 16 6 H 0.05 2.85 8.04 -2.91 -0.02 2.82 16 7 C 0.03 1.60 5.47 84.65 0.46 2.06 16 8 N -0.94 -57.40 13.96 21.45 0.30 -57.10 16 9 Si 0.91 43.97 24.65 68.60 1.69 45.66 16 10 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 12 H -0.25 -11.31 6.03 99.48 0.60 -10.71 16 13 C -0.06 -2.48 3.23 -19.87 -0.06 -2.55 16 14 C -0.11 -4.03 8.55 22.27 0.19 -3.84 16 15 C -0.12 -3.83 10.05 22.27 0.22 -3.61 16 16 C -0.14 -3.89 10.05 22.27 0.22 -3.67 16 17 C -0.12 -3.95 10.05 22.27 0.22 -3.72 16 18 C -0.16 -6.34 8.50 22.27 0.19 -6.15 16 19 C 0.07 2.45 2.85 46.18 0.13 2.58 16 20 H 0.08 3.51 7.07 -2.39 -0.02 3.49 16 21 C -0.14 -3.89 6.62 32.14 0.21 -3.68 16 22 C 0.05 1.22 7.78 72.74 0.57 1.79 16 23 O -0.40 -13.90 11.36 -148.98 -1.69 -15.59 16 24 C 0.02 0.91 6.26 72.45 0.45 1.36 16 25 H 0.02 0.67 5.84 -2.39 -0.01 0.65 16 26 H 0.09 2.32 6.03 -2.39 -0.01 2.31 16 27 H 0.07 2.15 6.27 -2.39 -0.01 2.14 16 28 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.11 4.50 7.94 -2.91 -0.02 4.48 16 30 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.10 3.86 6.25 -2.91 -0.02 3.84 16 34 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 35 H 0.09 2.33 5.69 -2.38 -0.01 2.31 16 36 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 2.52 5.49 -2.38 -0.01 2.51 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -64.67 299.09 1.67 -62.99 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.93 Total: 22.10 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 4.15 Total: -34.32 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -3.41 Total: -80.84 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -1.69 Total: -15.59 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.69 Total: 45.66 kcal Total: -64.67 1.67 -62.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250359207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.047 kcal (2) G-P(sol) polarization free energy of solvation -64.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds