Wall clock time and date at job start Mon Mar 30 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46883 * 2 1 4 4 C 1.50703 * 109.47020 * 240.00181 * 2 1 3 5 5 H 1.07998 * 119.99609 * 244.41093 * 4 2 1 6 6 C 1.37870 * 120.00247 * 64.41463 * 4 2 1 7 7 N 1.31522 * 119.99898 * 6.91066 * 6 4 2 8 8 Si 1.86796 * 120.00264 * 186.90945 * 6 4 2 9 9 H 1.48503 * 109.46993 * 84.98412 * 8 6 4 10 10 H 1.48493 * 109.47560 * 204.98726 * 8 6 4 11 11 H 1.48500 * 109.47235 * 324.98804 * 8 6 4 12 12 N 1.46897 * 109.47096 * 119.99887 * 2 1 3 13 13 C 1.46898 * 111.00221 * 58.95913 * 12 2 1 14 14 C 1.46903 * 111.00458 * 295.00001 * 12 2 1 15 15 C 1.52997 * 109.46906 * 284.08534 * 14 12 2 16 16 H 1.09002 * 110.67281 * 58.36298 * 15 14 12 17 17 C 1.54711 * 110.74898 * 181.77880 * 15 14 12 18 18 C 1.51645 * 101.93109 * 143.60297 * 17 15 14 19 19 C 1.37741 * 132.17251 * 164.09752 * 18 17 15 20 20 C 1.38349 * 119.97385 * 180.96312 * 19 18 17 21 21 C 1.38279 * 119.77253 * 0.03302 * 20 19 18 22 22 C 1.37938 * 120.34727 * 359.82458 * 21 20 19 23 23 C 1.38880 * 107.03829 * 344.64401 * 18 17 15 24 24 O 1.36142 * 111.23650 * 358.88652 * 23 18 17 25 25 H 1.08994 * 109.47376 * 58.90289 * 1 2 3 26 26 H 1.09001 * 109.47004 * 178.90588 * 1 2 3 27 27 H 1.08998 * 109.47189 * 298.90424 * 1 2 3 28 28 H 0.97000 * 119.99740 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47169 * 55.58678 * 13 12 2 30 30 H 1.09000 * 109.47542 * 175.59433 * 13 12 2 31 31 H 1.09007 * 109.46890 * 295.58974 * 13 12 2 32 32 H 1.08997 * 109.46605 * 44.07925 * 14 12 2 33 33 H 1.08997 * 109.47436 * 164.08232 * 14 12 2 34 34 H 1.09002 * 110.94093 * 261.76260 * 17 15 14 35 35 H 1.09001 * 110.93436 * 25.44212 * 17 15 14 36 36 H 1.08000 * 120.00782 * 0.95858 * 19 18 17 37 37 H 1.08003 * 120.11480 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.83083 * 179.79951 * 21 20 19 39 39 H 1.08004 * 119.87757 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5931 -1.6282 -1.1330 6 6 1.7759 -0.1887 -2.4807 7 7 1.2136 0.9946 -2.5968 8 14 2.2273 -1.1622 -4.0096 9 1 1.1302 -2.1085 -4.3356 10 1 2.4317 -0.2304 -5.1475 11 1 3.4788 -1.9220 -3.7612 12 7 2.0196 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2460 14 6 1.6487 0.0391 2.4181 15 6 2.5561 1.2609 2.5755 16 1 2.4768 1.9137 1.7062 17 6 2.2198 2.0295 3.8754 18 6 3.5909 2.4902 4.3309 19 6 3.9911 3.4424 5.2421 20 6 5.3386 3.6748 5.4523 21 6 6.2791 2.9490 4.7446 22 6 5.8806 1.9929 3.8337 23 6 4.5260 1.7493 3.6199 24 8 3.9199 0.8585 2.7876 25 1 -0.3634 0.5307 -0.8799 26 1 -0.3633 -1.0275 -0.0196 27 1 -0.3633 0.4967 0.8996 28 1 1.0329 1.3615 -3.4763 29 1 1.8098 -2.5926 0.3283 30 1 1.9680 -2.5892 2.1013 31 1 0.4426 -2.0731 1.3429 32 1 0.6109 0.3644 2.3449 33 1 1.7648 -0.6136 3.2833 34 1 1.5718 2.8811 3.6679 35 1 1.7663 1.3675 4.6131 36 1 3.2531 4.0074 5.7922 37 1 5.6549 4.4207 6.1665 38 1 7.3313 3.1320 4.9056 39 1 6.6216 1.4307 3.2849 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251576629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:34 Heat of formation + Delta-G solvation = 3.564140 kcal Electronic energy + Delta-G solvation = -19663.010061 eV Core-core repulsion = 16764.228464 eV Total energy + Delta-G solvation = -2898.781597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.86676 -37.70386 -36.69433 -32.93977 -32.37878 -30.11056 -29.83471 -28.67224 -26.31030 -25.15760 -23.59576 -22.29701 -21.52232 -21.43199 -18.99732 -17.25775 -16.59854 -16.07898 -15.73890 -15.15698 -14.91930 -14.15138 -14.05635 -13.81985 -13.23166 -13.04053 -12.92733 -12.73895 -12.64734 -12.01268 -11.83731 -11.61803 -11.38935 -11.06806 -10.98781 -10.79171 -10.71029 -10.62922 -10.45758 -10.41603 -10.08549 -9.66099 -8.91892 -8.80773 -8.35026 -7.90663 -7.13586 -6.02307 -4.02245 1.38310 1.51214 3.32485 3.38779 3.42636 3.55885 3.85783 4.42650 4.55607 4.66257 4.94404 5.09623 5.18571 5.29020 5.32181 5.41128 5.50316 5.64614 5.71051 5.75230 5.86053 6.01205 6.14278 6.18372 6.34282 6.37046 6.42727 6.54274 6.57473 6.61178 6.74045 6.79813 6.83963 7.04145 7.41382 7.53415 7.59621 7.84732 8.10857 8.33833 8.59750 9.02797 9.61527 11.07517 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027411 B = 0.004823 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.232388 B = 5804.028174 C = 6147.994141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.207 3.793 3 H 0.044 0.956 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.529 5.529 13 C 0.036 3.964 14 C 0.054 3.946 15 C 0.093 3.907 16 H 0.092 0.908 17 C -0.107 4.107 18 C -0.180 4.180 19 C -0.072 4.072 20 C -0.162 4.162 21 C -0.087 4.087 22 C -0.146 4.146 23 C 0.118 3.882 24 O -0.276 6.276 25 H 0.074 0.926 26 H 0.033 0.967 27 H 0.012 0.988 28 H 0.260 0.740 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.015 0.985 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.316 3.678 14.717 15.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.100 3.900 3 H 0.062 0.938 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.252 5.252 13 C -0.112 4.112 14 C -0.075 4.075 15 C 0.037 3.963 16 H 0.110 0.890 17 C -0.144 4.144 18 C -0.181 4.181 19 C -0.090 4.090 20 C -0.180 4.180 21 C -0.105 4.105 22 C -0.165 4.165 23 C 0.071 3.929 24 O -0.189 6.189 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.845 3.569 14.413 15.338 hybrid contribution -0.871 -0.270 -0.850 1.247 sum 2.974 3.299 13.563 14.271 Atomic orbital electron populations 1.22371 1.01352 0.99457 0.99692 1.19370 0.89166 0.95122 0.86305 0.93787 1.21080 1.34046 1.09003 0.89687 0.91879 1.24917 0.95456 0.94789 0.98977 1.69944 1.43909 1.15884 1.23631 0.86578 0.78852 0.79844 0.82557 1.20746 1.21375 1.19868 1.62300 1.59443 1.01820 1.01654 1.22224 0.96539 0.90836 1.01630 1.22183 0.95711 0.94344 0.95280 1.23495 0.79618 0.96500 0.96676 0.89042 1.21861 0.94612 1.00557 0.97405 1.20867 0.95422 1.00912 1.00883 1.20263 0.95939 0.96209 0.96586 1.20926 0.92637 1.02113 1.02361 1.20817 0.99512 0.94963 0.95209 1.20297 0.92523 1.01318 1.02338 1.19823 0.93425 0.89405 0.90213 1.87066 1.25375 1.44170 1.62314 0.90714 0.94772 0.96959 0.93022 0.90484 0.93917 0.96695 0.92695 0.91503 0.89279 0.89424 0.86218 0.85963 0.85583 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 8.34 37.16 0.31 -3.64 16 2 C 0.21 5.13 2.13 -68.87 -0.15 4.98 16 3 H 0.04 1.21 6.75 -51.93 -0.35 0.86 16 4 C -0.50 -13.70 7.92 -34.44 -0.27 -13.97 16 5 H 0.06 1.74 6.61 -52.49 -0.35 1.40 16 6 C 0.06 1.66 5.24 -17.82 -0.09 1.56 16 7 N -0.89 -25.56 11.97 55.43 0.66 -24.90 16 8 Si 0.89 21.46 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.53 -11.47 4.64 -236.29 -1.10 -12.56 16 13 C 0.04 0.71 8.73 60.06 0.52 1.23 16 14 C 0.05 0.96 4.56 -3.82 -0.02 0.95 16 15 C 0.09 1.64 3.65 -25.83 -0.09 1.55 16 16 H 0.09 1.78 6.89 -51.93 -0.36 1.43 16 17 C -0.11 -1.48 6.65 -26.52 -0.18 -1.66 16 18 C -0.18 -2.63 6.27 -104.10 -0.65 -3.28 16 19 C -0.07 -0.88 10.03 -39.72 -0.40 -1.28 16 20 C -0.16 -1.82 10.07 -39.53 -0.40 -2.21 16 21 C -0.09 -1.02 10.02 -39.68 -0.40 -1.42 16 22 C -0.15 -2.10 10.06 -39.30 -0.40 -2.49 16 23 C 0.12 1.96 7.04 -38.96 -0.27 1.69 16 24 O -0.28 -5.34 10.78 -20.19 -0.22 -5.55 16 25 H 0.07 1.92 6.73 -51.93 -0.35 1.57 16 26 H 0.03 0.77 6.55 -51.93 -0.34 0.43 16 27 H 0.01 0.24 6.20 -51.93 -0.32 -0.08 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.08 1.62 6.32 -51.93 -0.33 1.29 16 30 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 31 H 0.01 0.28 6.56 -51.92 -0.34 -0.06 16 32 H 0.06 0.95 5.86 -51.93 -0.30 0.65 16 33 H 0.07 1.10 7.89 -51.93 -0.41 0.69 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.09 7.92 -51.93 -0.41 0.67 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 310.01 15.07 4.67 4.67 Total: -1.00 -29.87 310.01 -9.01 -38.88 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.53 Total: 1.02 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.48 Total: -17.99 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.43 Total: -37.46 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.22 Total: -5.55 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.87 -9.01 -38.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251576629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.442 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds