Wall clock time and date at job start Mon Mar 30 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46883 * 2 1 4 4 C 1.50703 * 109.47020 * 240.00181 * 2 1 3 5 5 H 1.07998 * 119.99609 * 244.41093 * 4 2 1 6 6 C 1.37870 * 120.00247 * 64.41463 * 4 2 1 7 7 N 1.31522 * 119.99898 * 6.91066 * 6 4 2 8 8 Si 1.86796 * 120.00264 * 186.90945 * 6 4 2 9 9 H 1.48503 * 109.46993 * 84.98412 * 8 6 4 10 10 H 1.48493 * 109.47560 * 204.98726 * 8 6 4 11 11 H 1.48500 * 109.47235 * 324.98804 * 8 6 4 12 12 N 1.46897 * 109.47096 * 119.99887 * 2 1 3 13 13 C 1.46898 * 111.00221 * 58.95913 * 12 2 1 14 14 C 1.46903 * 111.00458 * 295.00001 * 12 2 1 15 15 C 1.52997 * 109.46906 * 284.08534 * 14 12 2 16 16 H 1.09002 * 110.67281 * 58.36298 * 15 14 12 17 17 C 1.54711 * 110.74898 * 181.77880 * 15 14 12 18 18 C 1.51645 * 101.93109 * 143.60297 * 17 15 14 19 19 C 1.37741 * 132.17251 * 164.09752 * 18 17 15 20 20 C 1.38349 * 119.97385 * 180.96312 * 19 18 17 21 21 C 1.38279 * 119.77253 * 0.03302 * 20 19 18 22 22 C 1.37938 * 120.34727 * 359.82458 * 21 20 19 23 23 C 1.38880 * 107.03829 * 344.64401 * 18 17 15 24 24 O 1.36142 * 111.23650 * 358.88652 * 23 18 17 25 25 H 1.08994 * 109.47376 * 58.90289 * 1 2 3 26 26 H 1.09001 * 109.47004 * 178.90588 * 1 2 3 27 27 H 1.08998 * 109.47189 * 298.90424 * 1 2 3 28 28 H 0.97000 * 119.99740 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47169 * 55.58678 * 13 12 2 30 30 H 1.09000 * 109.47542 * 175.59433 * 13 12 2 31 31 H 1.09007 * 109.46890 * 295.58974 * 13 12 2 32 32 H 1.08997 * 109.46605 * 44.07925 * 14 12 2 33 33 H 1.08997 * 109.47436 * 164.08232 * 14 12 2 34 34 H 1.09002 * 110.94093 * 261.76260 * 17 15 14 35 35 H 1.09001 * 110.93436 * 25.44212 * 17 15 14 36 36 H 1.08000 * 120.00782 * 0.95858 * 19 18 17 37 37 H 1.08003 * 120.11480 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.83083 * 179.79951 * 21 20 19 39 39 H 1.08004 * 119.87757 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5931 -1.6282 -1.1330 6 6 1.7759 -0.1887 -2.4807 7 7 1.2136 0.9946 -2.5968 8 14 2.2273 -1.1622 -4.0096 9 1 1.1302 -2.1085 -4.3356 10 1 2.4317 -0.2304 -5.1475 11 1 3.4788 -1.9220 -3.7612 12 7 2.0196 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2460 14 6 1.6487 0.0391 2.4181 15 6 2.5561 1.2609 2.5755 16 1 2.4768 1.9137 1.7062 17 6 2.2198 2.0295 3.8754 18 6 3.5909 2.4902 4.3309 19 6 3.9911 3.4424 5.2421 20 6 5.3386 3.6748 5.4523 21 6 6.2791 2.9490 4.7446 22 6 5.8806 1.9929 3.8337 23 6 4.5260 1.7493 3.6199 24 8 3.9199 0.8585 2.7876 25 1 -0.3634 0.5307 -0.8799 26 1 -0.3633 -1.0275 -0.0196 27 1 -0.3633 0.4967 0.8996 28 1 1.0329 1.3615 -3.4763 29 1 1.8098 -2.5926 0.3283 30 1 1.9680 -2.5892 2.1013 31 1 0.4426 -2.0731 1.3429 32 1 0.6109 0.3644 2.3449 33 1 1.7648 -0.6136 3.2833 34 1 1.5718 2.8811 3.6679 35 1 1.7663 1.3675 4.6131 36 1 3.2531 4.0074 5.7922 37 1 5.6549 4.4207 6.1665 38 1 7.3313 3.1320 4.9056 39 1 6.6216 1.4307 3.2849 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251576629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:34 Heat of formation + Delta-G solvation = -14.652134 kcal Electronic energy + Delta-G solvation = -19663.799978 eV Core-core repulsion = 16764.228464 eV Total energy + Delta-G solvation = -2899.571514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.03955 -39.15610 -38.03965 -34.80718 -33.69469 -31.51479 -30.87062 -30.42006 -27.73425 -27.09967 -25.23122 -23.44282 -22.87013 -22.49834 -20.74062 -18.59036 -18.11629 -17.60097 -17.11477 -16.71609 -16.19913 -15.91500 -15.55849 -15.01942 -14.61328 -14.41446 -14.34304 -13.97754 -13.92760 -13.68395 -13.20393 -13.11620 -12.73941 -12.68405 -12.58562 -12.55207 -12.37302 -12.24793 -12.03986 -11.83802 -11.61710 -11.41581 -10.92589 -10.46649 -9.79589 -9.03217 -8.80965 -8.14164 -6.20751 0.39060 0.47817 1.40882 1.41541 1.51533 2.37805 2.44095 2.83318 3.16791 3.26040 3.50856 3.77647 3.94020 4.03344 4.24567 4.26710 4.38649 4.49382 4.53510 4.60174 4.62252 4.71168 4.75265 4.81151 4.86240 4.92314 4.96575 5.10155 5.17814 5.18542 5.45436 5.51733 5.54849 5.58684 5.68833 5.72839 5.84285 6.17582 6.36581 6.49292 6.74950 6.92077 7.47141 8.94936 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027411 B = 0.004823 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.232388 B = 5804.028174 C = 6147.994141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.007 0.993 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.549 5.549 13 C 0.040 3.960 14 C 0.058 3.942 15 C 0.090 3.910 16 H 0.056 0.944 17 C -0.095 4.095 18 C -0.189 4.189 19 C -0.075 4.075 20 C -0.151 4.151 21 C -0.085 4.085 22 C -0.163 4.163 23 C 0.071 3.929 24 O -0.312 6.312 25 H 0.046 0.954 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.261 0.739 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.150 0.850 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 4.172 16.849 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.107 3.893 3 H 0.025 0.975 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.272 5.272 13 C -0.108 4.108 14 C -0.070 4.070 15 C 0.033 3.967 16 H 0.074 0.926 17 C -0.132 4.132 18 C -0.190 4.190 19 C -0.092 4.092 20 C -0.169 4.169 21 C -0.103 4.103 22 C -0.182 4.182 23 C 0.025 3.975 24 O -0.226 6.226 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.167 0.833 37 H 0.178 0.822 38 H 0.176 0.824 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.026 4.057 16.565 17.523 hybrid contribution -0.818 -0.359 -1.410 1.669 sum 3.208 3.698 15.156 15.927 Atomic orbital electron populations 1.22155 1.00166 0.99527 0.99570 1.19066 0.89875 0.93186 0.87155 0.97463 1.21386 1.34059 1.08887 0.91182 0.92731 1.25662 0.95505 0.95618 1.01776 1.70062 1.44809 1.17088 1.24200 0.85616 0.78708 0.78581 0.79024 1.19738 1.21050 1.19736 1.62160 1.60225 1.02848 1.01961 1.22205 0.97252 0.89683 1.01699 1.22237 0.96155 0.94540 0.94089 1.23388 0.79632 0.96187 0.97447 0.92614 1.21799 0.94885 1.00911 0.95601 1.21077 0.95050 1.01449 1.01455 1.20686 0.97336 0.95386 0.95841 1.21436 0.92023 1.01690 1.01767 1.21229 1.01498 0.93644 0.93931 1.20590 0.91837 1.02390 1.03391 1.20237 0.94805 0.90858 0.91582 1.86987 1.26159 1.45759 1.63727 0.93535 0.94289 0.94412 0.93011 0.92519 0.91377 0.95712 0.91821 0.89491 0.87661 0.87493 0.83261 0.82249 0.82422 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.30 8.34 71.98 0.60 -6.69 16 2 C 0.21 11.00 2.13 44.17 0.09 11.09 16 3 H 0.01 0.43 6.75 -2.38 -0.02 0.42 16 4 C -0.52 -29.16 7.92 25.60 0.20 -28.96 16 5 H 0.05 3.10 6.61 -2.91 -0.02 3.08 16 6 C 0.01 0.73 5.24 84.65 0.44 1.18 16 7 N -0.92 -54.11 11.97 21.45 0.26 -53.85 16 8 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 N -0.55 -24.15 4.64 -901.48 -4.18 -28.34 16 13 C 0.04 1.54 8.73 127.69 1.12 2.65 16 14 C 0.06 2.07 4.56 86.30 0.39 2.46 16 15 C 0.09 3.25 3.65 31.18 0.11 3.37 16 16 H 0.06 2.35 6.89 -2.39 -0.02 2.34 16 17 C -0.09 -2.53 6.65 30.73 0.20 -2.32 16 18 C -0.19 -5.33 6.27 -19.53 -0.12 -5.45 16 19 C -0.07 -1.60 10.03 22.18 0.22 -1.38 16 20 C -0.15 -2.82 10.07 22.31 0.22 -2.60 16 21 C -0.09 -1.79 10.02 22.21 0.22 -1.57 16 22 C -0.16 -4.69 10.06 22.45 0.23 -4.46 16 23 C 0.07 2.39 7.04 22.67 0.16 2.55 16 24 O -0.31 -12.58 10.78 -95.17 -1.03 -13.61 16 25 H 0.05 2.44 6.73 -2.39 -0.02 2.42 16 26 H 0.04 1.75 6.55 -2.39 -0.02 1.73 16 27 H 0.04 1.54 6.20 -2.39 -0.01 1.52 16 28 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.06 2.40 6.32 -2.39 -0.02 2.39 16 30 H 0.07 2.26 8.08 -2.39 -0.02 2.24 16 31 H 0.02 0.89 6.56 -2.38 -0.02 0.88 16 32 H 0.06 2.14 5.86 -2.39 -0.01 2.13 16 33 H 0.09 2.73 7.89 -2.39 -0.02 2.71 16 34 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.11 2.41 7.92 -2.39 -0.02 2.39 16 36 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.12 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -67.13 310.01 2.21 -64.92 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.04 Total: 14.30 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 4.10 Total: -30.14 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -3.93 Total: -82.19 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -1.03 Total: -13.61 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -67.13 2.21 -64.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251576629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.264 kcal (2) G-P(sol) polarization free energy of solvation -67.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds