Wall clock time and date at job start Mon Mar 30 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.54116 * 2 1 4 4 C 1.53095 * 109.50840 * 120.11538 * 2 1 3 5 5 N 1.47012 * 109.25782 * 176.78366 * 4 2 1 6 6 C 1.46901 * 111.00130 * 177.60952 * 5 4 2 7 7 H 1.08996 * 109.47374 * 54.99490 * 6 5 4 8 8 C 1.50701 * 109.46798 * 294.99405 * 6 5 4 9 9 H 1.07995 * 120.00484 * 330.68388 * 8 6 5 10 10 C 1.37885 * 120.00018 * 150.67753 * 8 6 5 11 11 N 1.31515 * 119.99544 * 353.11885 * 10 8 6 12 12 Si 1.86794 * 120.00108 * 173.11969 * 10 8 6 13 13 H 1.48501 * 109.47103 * 270.00316 * 12 10 8 14 14 H 1.48504 * 109.47262 * 29.99887 * 12 10 8 15 15 H 1.48492 * 109.47300 * 150.00054 * 12 10 8 16 16 C 1.50697 * 109.47118 * 174.99755 * 6 5 4 17 17 C 1.38236 * 120.00319 * 46.71940 * 16 6 5 18 18 C 1.38227 * 120.00166 * 179.76677 * 17 16 6 19 19 C 1.38240 * 120.00139 * 0.50011 * 18 17 16 20 20 C 1.38237 * 119.99824 * 359.75160 * 19 18 17 21 21 C 1.38232 * 119.99893 * 226.98787 * 16 6 5 22 22 C 1.47020 * 110.74941 * 301.38054 * 5 4 2 23 23 C 1.53097 * 109.25843 * 58.61804 * 22 5 4 24 24 O 1.43014 * 109.25786 * 303.15233 * 23 22 5 25 25 H 1.09006 * 109.46588 * 299.88645 * 1 2 3 26 26 H 1.08999 * 109.47380 * 59.88360 * 1 2 3 27 27 H 1.08995 * 109.47276 * 179.89062 * 1 2 3 28 28 H 1.08998 * 109.51002 * 56.84388 * 4 2 1 29 29 H 1.09004 * 109.50509 * 296.71480 * 4 2 1 30 30 H 0.97007 * 119.99525 * 179.97438 * 11 10 8 31 31 H 1.08000 * 119.99530 * 359.97438 * 17 16 6 32 32 H 1.07999 * 120.00304 * 180.22674 * 18 17 16 33 33 H 1.07999 * 120.00060 * 179.72563 * 19 18 17 34 34 H 1.07998 * 120.00361 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.99945 * 0.02562 * 21 16 6 36 36 H 1.09004 * 109.50415 * 178.55346 * 22 5 4 37 37 H 1.08996 * 109.50755 * 298.67986 * 22 5 4 38 38 H 1.08999 * 109.50740 * 183.21270 * 23 22 5 39 39 H 1.09005 * 109.54128 * 63.10760 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7240 1.2483 5 7 3.5093 -0.7885 1.2043 6 6 4.0447 -1.4271 2.4140 7 1 3.5848 -2.4070 2.5415 8 6 3.7374 -0.5680 3.6134 9 1 3.6493 0.5026 3.5026 10 6 3.5686 -1.1489 4.8525 11 7 3.5408 -2.4589 4.9662 12 14 3.3793 -0.0754 6.3694 13 1 4.7171 0.1956 6.9541 14 1 2.7356 1.2081 5.9903 15 1 2.5347 -0.7763 7.3696 16 6 5.5372 -1.5864 2.2794 17 6 6.3083 -0.5277 1.8372 18 6 7.6778 -0.6723 1.7183 19 6 8.2753 -1.8789 2.0317 20 6 7.5036 -2.9392 2.4689 21 6 6.1346 -2.7929 2.5927 22 6 3.9639 -1.4885 -0.0061 23 6 3.4333 -0.7568 -1.2418 24 8 2.0075 -0.6761 -1.1663 25 1 -0.3633 0.5121 0.8911 26 1 -0.3634 0.5156 -0.8889 27 1 -0.3633 -1.0276 -0.0020 28 1 1.6332 -1.7344 1.2758 29 1 1.7274 -0.1797 2.1390 30 1 3.4224 -2.8675 5.8380 31 1 5.8409 0.4135 1.5878 32 1 8.2806 0.1560 1.3763 33 1 9.3448 -1.9932 1.9346 34 1 7.9703 -3.8820 2.7134 35 1 5.5316 -3.6216 2.9337 36 1 5.0536 -1.5021 -0.0310 37 1 3.5866 -2.5110 0.0014 38 1 3.7200 -1.3040 -2.1398 39 1 3.8533 0.2485 -1.2786 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251600955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:44 Heat of formation + Delta-G solvation = -18.503193 kcal Electronic energy + Delta-G solvation = -20319.725248 eV Core-core repulsion = 17419.986740 eV Total energy + Delta-G solvation = -2899.738508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.29687 -38.13490 -35.28692 -32.62990 -32.35343 -30.47773 -29.99135 -28.25949 -26.34016 -24.91921 -22.60511 -22.11330 -21.59865 -20.04630 -19.40149 -16.58287 -15.96993 -15.82761 -15.64499 -14.81185 -14.41499 -14.33673 -14.04419 -13.89348 -13.50053 -12.91702 -12.52929 -12.33406 -12.13478 -12.06803 -11.96085 -11.55903 -11.30140 -11.03969 -10.93979 -10.75451 -10.66336 -10.34779 -10.22681 -10.08454 -9.71167 -9.41485 -9.02377 -8.60007 -8.04719 -7.67942 -7.32173 -6.15916 -4.18954 2.28090 2.30604 3.24898 3.31828 3.34224 4.16396 4.30885 4.61777 4.91312 5.17087 5.35914 5.50375 5.61653 5.65038 5.65766 5.72249 5.75722 5.83013 5.92520 5.94331 6.10985 6.18239 6.27407 6.37270 6.41338 6.44405 6.50869 6.60782 6.73633 6.87370 6.95332 7.24826 7.31484 7.35645 7.61555 7.68474 7.73155 7.80854 8.02097 8.08813 8.42552 8.92240 9.44864 10.90531 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013357 B = 0.009743 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.735116 B = 2873.297080 C = 4446.613871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.087 3.913 3 H 0.060 0.940 4 C 0.042 3.958 5 N -0.530 5.530 6 C 0.236 3.764 7 H 0.039 0.961 8 C -0.498 4.498 9 H 0.065 0.935 10 C 0.067 3.933 11 N -0.884 5.884 12 Si 0.895 3.105 13 H -0.279 1.279 14 H -0.272 1.272 15 H -0.287 1.287 16 C -0.025 4.025 17 C -0.105 4.105 18 C -0.136 4.136 19 C -0.152 4.152 20 C -0.130 4.130 21 C -0.115 4.115 22 C 0.013 3.987 23 C 0.069 3.931 24 O -0.392 6.392 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.029 0.971 29 H 0.094 0.906 30 H 0.263 0.737 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.029 0.971 38 H 0.086 0.914 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.012 2.077 -8.038 8.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.029 3.971 3 H 0.078 0.922 4 C -0.086 4.086 5 N -0.255 5.255 6 C 0.130 3.870 7 H 0.057 0.943 8 C -0.536 4.536 9 H 0.084 0.916 10 C -0.137 4.137 11 N -0.521 5.521 12 Si 0.723 3.277 13 H -0.205 1.205 14 H -0.197 1.197 15 H -0.213 1.213 16 C -0.026 4.026 17 C -0.123 4.123 18 C -0.154 4.154 19 C -0.170 4.170 20 C -0.149 4.149 21 C -0.134 4.134 22 C -0.116 4.116 23 C -0.008 4.008 24 O -0.312 6.312 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.104 0.896 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.028 2.325 -8.045 8.437 hybrid contribution 0.043 -0.329 1.356 1.396 sum 1.071 1.996 -6.689 7.062 Atomic orbital electron populations 1.21718 0.93656 1.02560 1.01950 1.22231 0.94103 0.95604 0.85174 0.92164 1.22518 0.88835 0.99305 0.97964 1.62365 1.07890 1.53026 1.02247 1.18492 0.86498 0.95585 0.86428 0.94349 1.20913 1.47955 0.93785 0.90969 0.91646 1.24987 0.94417 0.95013 0.99263 1.69920 1.48755 1.09028 1.24424 0.86532 0.78167 0.80544 0.82463 1.20523 1.19662 1.21254 1.20479 0.98264 0.91660 0.92171 1.20969 0.92615 0.99132 0.99619 1.21000 0.95192 0.96958 1.02239 1.20818 0.98533 0.94146 1.03529 1.20969 0.94324 0.98192 1.01368 1.21090 0.94156 0.98075 1.00052 1.22757 1.01080 0.95859 0.91871 1.22579 0.80963 0.99859 0.97431 1.87879 1.21229 1.78745 1.43322 0.91019 0.92376 0.92164 0.95238 0.88794 0.92679 0.86297 0.87599 0.87770 0.87609 0.86541 0.90030 0.95297 0.89621 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.57 37.16 0.36 -1.59 16 2 C 0.09 1.45 3.43 -26.68 -0.09 1.36 16 3 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.04 0.84 4.74 -3.71 -0.02 0.82 16 5 N -0.53 -11.05 4.15 -229.12 -0.95 -12.00 16 6 C 0.24 5.62 1.76 -70.02 -0.12 5.49 16 7 H 0.04 1.04 7.16 -51.93 -0.37 0.67 16 8 C -0.50 -12.93 7.22 -34.44 -0.25 -13.17 16 9 H 0.07 1.72 7.82 -52.49 -0.41 1.31 16 10 C 0.07 1.77 5.45 -17.82 -0.10 1.68 16 11 N -0.88 -24.30 12.85 55.43 0.71 -23.58 16 12 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 C -0.02 -0.55 3.50 -104.63 -0.37 -0.91 16 17 C -0.10 -2.14 8.09 -39.59 -0.32 -2.46 16 18 C -0.14 -2.45 10.05 -39.58 -0.40 -2.84 16 19 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 20 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 21 C -0.12 -2.49 9.67 -39.58 -0.38 -2.88 16 22 C 0.01 0.24 5.19 -3.71 -0.02 0.22 16 23 C 0.07 1.10 7.01 37.21 0.26 1.36 16 24 O -0.39 -6.83 10.47 -35.23 -0.37 -7.20 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.97 7.18 -51.93 -0.37 1.59 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.12 2.43 7.93 -52.49 -0.42 2.01 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.12 2.64 7.99 -52.48 -0.42 2.22 16 36 H 0.08 1.51 5.97 -51.93 -0.31 1.20 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 315.76 15.07 4.76 4.76 Total: -1.00 -27.62 315.76 -9.20 -36.82 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.09 Total: 4.25 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -2.24 Total: -18.84 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.24 Total: -35.58 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.37 Total: -7.20 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.62 -9.20 -36.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251600955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.318 kcal (2) G-P(sol) polarization free energy of solvation -27.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds