Wall clock time and date at job start Mon Mar 30 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.54116 * 2 1 4 4 C 1.53095 * 109.50840 * 120.11538 * 2 1 3 5 5 N 1.47012 * 109.25782 * 176.78366 * 4 2 1 6 6 C 1.46901 * 111.00130 * 177.60952 * 5 4 2 7 7 H 1.08996 * 109.47374 * 54.99490 * 6 5 4 8 8 C 1.50701 * 109.46798 * 294.99405 * 6 5 4 9 9 H 1.07995 * 120.00484 * 330.68388 * 8 6 5 10 10 C 1.37885 * 120.00018 * 150.67753 * 8 6 5 11 11 N 1.31515 * 119.99544 * 353.11885 * 10 8 6 12 12 Si 1.86794 * 120.00108 * 173.11969 * 10 8 6 13 13 H 1.48501 * 109.47103 * 270.00316 * 12 10 8 14 14 H 1.48504 * 109.47262 * 29.99887 * 12 10 8 15 15 H 1.48492 * 109.47300 * 150.00054 * 12 10 8 16 16 C 1.50697 * 109.47118 * 174.99755 * 6 5 4 17 17 C 1.38236 * 120.00319 * 46.71940 * 16 6 5 18 18 C 1.38227 * 120.00166 * 179.76677 * 17 16 6 19 19 C 1.38240 * 120.00139 * 0.50011 * 18 17 16 20 20 C 1.38237 * 119.99824 * 359.75160 * 19 18 17 21 21 C 1.38232 * 119.99893 * 226.98787 * 16 6 5 22 22 C 1.47020 * 110.74941 * 301.38054 * 5 4 2 23 23 C 1.53097 * 109.25843 * 58.61804 * 22 5 4 24 24 O 1.43014 * 109.25786 * 303.15233 * 23 22 5 25 25 H 1.09006 * 109.46588 * 299.88645 * 1 2 3 26 26 H 1.08999 * 109.47380 * 59.88360 * 1 2 3 27 27 H 1.08995 * 109.47276 * 179.89062 * 1 2 3 28 28 H 1.08998 * 109.51002 * 56.84388 * 4 2 1 29 29 H 1.09004 * 109.50509 * 296.71480 * 4 2 1 30 30 H 0.97007 * 119.99525 * 179.97438 * 11 10 8 31 31 H 1.08000 * 119.99530 * 359.97438 * 17 16 6 32 32 H 1.07999 * 120.00304 * 180.22674 * 18 17 16 33 33 H 1.07999 * 120.00060 * 179.72563 * 19 18 17 34 34 H 1.07998 * 120.00361 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.99945 * 0.02562 * 21 16 6 36 36 H 1.09004 * 109.50415 * 178.55346 * 22 5 4 37 37 H 1.08996 * 109.50755 * 298.67986 * 22 5 4 38 38 H 1.08999 * 109.50740 * 183.21270 * 23 22 5 39 39 H 1.09005 * 109.54128 * 63.10760 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7240 1.2483 5 7 3.5093 -0.7885 1.2043 6 6 4.0447 -1.4271 2.4140 7 1 3.5848 -2.4070 2.5415 8 6 3.7374 -0.5680 3.6134 9 1 3.6493 0.5026 3.5026 10 6 3.5686 -1.1489 4.8525 11 7 3.5408 -2.4589 4.9662 12 14 3.3793 -0.0754 6.3694 13 1 4.7171 0.1956 6.9541 14 1 2.7356 1.2081 5.9903 15 1 2.5347 -0.7763 7.3696 16 6 5.5372 -1.5864 2.2794 17 6 6.3083 -0.5277 1.8372 18 6 7.6778 -0.6723 1.7183 19 6 8.2753 -1.8789 2.0317 20 6 7.5036 -2.9392 2.4689 21 6 6.1346 -2.7929 2.5927 22 6 3.9639 -1.4885 -0.0061 23 6 3.4333 -0.7568 -1.2418 24 8 2.0075 -0.6761 -1.1663 25 1 -0.3633 0.5121 0.8911 26 1 -0.3634 0.5156 -0.8889 27 1 -0.3633 -1.0276 -0.0020 28 1 1.6332 -1.7344 1.2758 29 1 1.7274 -0.1797 2.1390 30 1 3.4224 -2.8675 5.8380 31 1 5.8409 0.4135 1.5878 32 1 8.2806 0.1560 1.3763 33 1 9.3448 -1.9932 1.9346 34 1 7.9703 -3.8820 2.7134 35 1 5.5316 -3.6216 2.9337 36 1 5.0536 -1.5021 -0.0310 37 1 3.5866 -2.5110 0.0014 38 1 3.7200 -1.3040 -2.1398 39 1 3.8533 0.2485 -1.2786 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251600955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:44 Heat of formation + Delta-G solvation = -34.573373 kcal Electronic energy + Delta-G solvation = -20320.422103 eV Core-core repulsion = 17419.986740 eV Total energy + Delta-G solvation = -2900.435364 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83887 -39.63043 -36.90212 -34.55453 -33.70138 -32.10840 -31.52844 -29.77517 -28.01370 -26.58000 -24.26488 -23.54685 -23.14475 -21.57044 -21.02445 -18.52040 -17.51771 -17.31208 -17.16559 -16.47125 -16.12778 -15.74544 -15.56740 -15.43929 -15.11688 -14.55540 -14.07262 -13.94594 -13.68251 -13.50351 -13.34637 -13.04471 -12.87781 -12.76865 -12.65978 -12.28304 -12.13352 -12.04138 -11.94767 -11.67125 -11.25915 -11.19328 -10.68964 -10.43007 -9.58894 -9.29711 -9.08117 -8.17114 -6.27059 0.72573 0.76584 1.38122 1.39763 1.48915 2.37048 2.84134 3.00635 3.20463 3.31630 3.95660 4.16135 4.22291 4.23040 4.25389 4.31212 4.32276 4.42465 4.53177 4.61523 4.70987 4.76810 4.87514 4.89232 4.94516 4.99143 5.04996 5.11263 5.25577 5.30751 5.38319 5.44255 5.66253 5.78976 5.79181 6.04229 6.05181 6.23689 6.30153 6.41542 6.63065 6.89181 7.39778 8.88137 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013357 B = 0.009743 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.735116 B = 2873.297080 C = 4446.613871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.093 3.907 3 H 0.068 0.932 4 C 0.044 3.956 5 N -0.529 5.529 6 C 0.244 3.756 7 H -0.010 1.010 8 C -0.504 4.504 9 H 0.058 0.942 10 C 0.020 3.980 11 N -0.916 5.916 12 Si 0.953 3.047 13 H -0.279 1.279 14 H -0.263 1.263 15 H -0.285 1.285 16 C -0.047 4.047 17 C -0.115 4.115 18 C -0.127 4.127 19 C -0.141 4.141 20 C -0.130 4.130 21 C -0.141 4.141 22 C 0.017 3.983 23 C 0.072 3.928 24 O -0.399 6.399 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.005 0.995 29 H 0.076 0.924 30 H 0.262 0.738 31 H 0.115 0.885 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.008 0.992 38 H 0.116 0.884 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 3.718 -9.245 10.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.035 3.965 3 H 0.086 0.914 4 C -0.084 4.084 5 N -0.254 5.254 6 C 0.138 3.862 7 H 0.008 0.992 8 C -0.542 4.542 9 H 0.076 0.924 10 C -0.181 4.181 11 N -0.554 5.554 12 Si 0.779 3.221 13 H -0.205 1.205 14 H -0.187 1.187 15 H -0.210 1.210 16 C -0.048 4.048 17 C -0.134 4.134 18 C -0.145 4.145 19 C -0.159 4.159 20 C -0.148 4.148 21 C -0.160 4.160 22 C -0.112 4.112 23 C -0.004 4.004 24 O -0.318 6.318 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.023 0.977 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.149 0.851 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.026 0.974 38 H 0.134 0.866 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.699 3.978 -9.272 10.444 hybrid contribution -0.404 -0.879 1.667 1.927 sum 2.295 3.099 -7.605 8.527 Atomic orbital electron populations 1.21722 0.91319 1.02746 1.03599 1.22256 0.95922 0.95088 0.83250 0.91390 1.22538 0.88415 0.98123 0.99373 1.62363 1.08327 1.52568 1.02140 1.18204 0.87912 0.92828 0.87263 0.99234 1.21092 1.47580 0.93494 0.92026 0.92387 1.25695 0.94501 0.96008 1.01849 1.70062 1.50252 1.10453 1.24673 0.85625 0.77967 0.79278 0.79260 1.20527 1.18736 1.21026 1.20331 0.97234 0.92949 0.94319 1.20981 0.93935 0.98203 1.00234 1.21395 0.94177 0.98360 1.00530 1.21282 1.00460 0.93000 1.01169 1.21261 0.92955 1.00026 1.00510 1.21037 0.95713 0.97369 1.01881 1.22801 1.01209 0.95033 0.92147 1.22706 0.80266 1.00554 0.96901 1.87884 1.21992 1.78863 1.43106 0.89883 0.90186 0.92743 0.97716 0.90546 0.92939 0.86682 0.83897 0.83575 0.85113 0.89365 0.89852 0.97371 0.86595 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.57 71.98 0.69 -2.91 16 2 C 0.09 3.04 3.43 30.63 0.10 3.15 16 3 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.04 1.82 4.74 86.31 0.41 2.23 16 5 N -0.53 -22.87 4.15 -878.79 -3.65 -26.52 16 6 C 0.24 12.32 1.76 43.42 0.08 12.39 16 7 H -0.01 -0.60 7.16 -2.39 -0.02 -0.62 16 8 C -0.50 -27.20 7.22 25.60 0.18 -27.02 16 9 H 0.06 3.15 7.82 -2.91 -0.02 3.12 16 10 C 0.02 1.08 5.45 84.66 0.46 1.54 16 11 N -0.92 -52.92 12.85 21.45 0.28 -52.65 16 12 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 16 C -0.05 -2.17 3.50 -19.87 -0.07 -2.24 16 17 C -0.12 -4.60 8.09 22.27 0.18 -4.42 16 18 C -0.13 -4.14 10.05 22.27 0.22 -3.92 16 19 C -0.14 -4.41 10.05 22.27 0.22 -4.18 16 20 C -0.13 -4.67 10.05 22.27 0.22 -4.44 16 21 C -0.14 -6.31 9.67 22.27 0.22 -6.10 16 22 C 0.02 0.63 5.19 86.31 0.45 1.08 16 23 C 0.07 2.20 7.01 72.01 0.50 2.71 16 24 O -0.40 -13.37 10.47 -148.98 -1.56 -14.92 16 25 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.08 3.37 7.18 -2.39 -0.02 3.35 16 30 H 0.26 14.47 8.31 -92.70 -0.77 13.69 16 31 H 0.12 4.61 7.93 -2.91 -0.02 4.59 16 32 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 33 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 35 H 0.09 4.34 7.99 -2.91 -0.02 4.31 16 36 H 0.08 3.10 5.97 -2.38 -0.01 3.08 16 37 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -62.56 315.76 1.97 -60.59 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 1.01 Total: 20.03 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: 3.88 Total: -32.14 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -3.38 Total: -79.17 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -1.56 Total: -14.92 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -62.56 1.97 -60.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251600955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.014 kcal (2) G-P(sol) polarization free energy of solvation -62.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds