Wall clock time and date at job start Mon Mar 30 2020 06:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.50322 * 2 1 4 4 C 1.53095 * 109.50809 * 239.91892 * 2 1 3 5 5 N 1.47014 * 109.25795 * 183.21479 * 4 2 1 6 6 C 1.46906 * 110.99983 * 182.39117 * 5 4 2 7 7 H 1.09005 * 109.47034 * 303.97642 * 6 5 4 8 8 C 1.50700 * 109.47217 * 183.97758 * 6 5 4 9 9 H 1.07999 * 119.99821 * 305.33100 * 8 6 5 10 10 C 1.37878 * 120.00126 * 125.32435 * 8 6 5 11 11 N 1.31513 * 119.99729 * 354.86879 * 10 8 6 12 12 Si 1.86801 * 119.99984 * 174.86237 * 10 8 6 13 13 H 1.48497 * 109.46854 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46669 * 120.00376 * 12 10 8 15 15 H 1.48494 * 109.47366 * 240.00395 * 12 10 8 16 16 C 1.50699 * 109.46948 * 63.97511 * 6 5 4 17 17 C 1.38234 * 119.99938 * 45.51713 * 16 6 5 18 18 C 1.38239 * 119.99750 * 179.78532 * 17 16 6 19 19 C 1.38236 * 120.00163 * 0.43790 * 18 17 16 20 20 C 1.38238 * 119.99983 * 359.81306 * 19 18 17 21 21 C 1.38237 * 119.99861 * 225.77884 * 16 6 5 22 22 C 1.47013 * 110.75386 * 58.61678 * 5 4 2 23 23 C 1.53103 * 109.25344 * 301.38269 * 22 5 4 24 24 O 1.43009 * 109.50974 * 120.08880 * 2 1 3 25 25 H 1.09001 * 109.46899 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47210 * 60.00216 * 1 2 3 27 27 H 1.08998 * 109.47327 * 299.99404 * 1 2 3 28 28 H 1.09006 * 109.50567 * 303.14903 * 4 2 1 29 29 H 1.09004 * 109.51174 * 63.23372 * 4 2 1 30 30 H 0.97001 * 119.99513 * 179.97438 * 11 10 8 31 31 H 1.07999 * 120.00022 * 359.97438 * 17 16 6 32 32 H 1.07994 * 119.99805 * 180.27233 * 18 17 16 33 33 H 1.07997 * 120.00555 * 179.83352 * 19 18 17 34 34 H 1.07993 * 120.00478 * 180.02562 * 20 19 18 35 35 H 1.08002 * 119.99950 * 359.97438 * 21 16 6 36 36 H 1.08999 * 109.50946 * 61.31427 * 22 5 4 37 37 H 1.08994 * 109.50491 * 181.44998 * 22 5 4 38 38 H 1.09003 * 109.50182 * 176.78196 * 23 22 5 39 39 H 1.09002 * 109.50845 * 296.86745 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7233 -1.2487 5 7 3.5093 -0.7878 -1.2048 6 6 4.0447 -1.4257 -2.4150 7 1 3.5983 -2.4131 -2.5331 8 6 5.5404 -1.5622 -2.2911 9 1 6.1463 -0.6933 -2.0805 10 6 6.1353 -2.7963 -2.4466 11 7 5.3917 -3.8697 -2.6023 12 14 7.9975 -2.9434 -2.4362 13 1 8.5991 -1.5992 -2.2461 14 1 8.4173 -3.8349 -1.3252 15 1 8.4562 -3.5132 -3.7284 16 6 3.7154 -0.5785 -3.6170 17 6 3.9085 0.7896 -3.5722 18 6 3.6106 1.5661 -4.6764 19 6 3.1109 0.9758 -5.8221 20 6 2.9129 -0.3916 -5.8651 21 6 3.2150 -1.1688 -4.7624 22 6 3.9640 -1.4883 0.0051 23 6 3.4335 -0.7572 1.2413 24 8 2.0076 -0.6758 1.1663 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5137 0.8900 28 1 1.6332 -1.7337 -1.2767 29 1 1.7267 -0.1790 -2.1392 30 1 5.8102 -4.7379 -2.7120 31 1 4.2951 1.2513 -2.6757 32 1 3.7656 2.6344 -4.6429 33 1 2.8756 1.5828 -6.6838 34 1 2.5229 -0.8530 -6.7603 35 1 3.0605 -2.2372 -4.7961 36 1 3.5867 -2.5109 -0.0028 37 1 5.0536 -1.5019 0.0300 38 1 3.7201 -1.3050 2.1390 39 1 3.8540 0.2477 1.2783 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251600959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:46 Heat of formation + Delta-G solvation = -19.966541 kcal Electronic energy + Delta-G solvation = -20325.676026 eV Core-core repulsion = 17425.874062 eV Total energy + Delta-G solvation = -2899.801964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.20525 -38.15220 -35.28882 -32.64201 -32.18942 -30.72554 -30.06299 -27.71792 -26.98276 -24.33358 -23.19512 -21.85181 -21.54072 -20.04912 -19.36045 -16.59888 -16.00752 -15.77286 -15.60132 -14.72769 -14.48501 -14.27907 -14.07049 -13.92386 -13.43141 -12.93874 -12.60480 -12.27008 -12.17171 -12.10615 -11.95154 -11.52355 -11.37562 -11.10364 -10.92193 -10.69094 -10.57819 -10.39601 -10.27979 -9.97448 -9.61854 -9.39642 -8.96097 -8.69296 -8.12353 -7.76401 -7.23014 -6.19818 -4.24124 2.20620 2.24711 3.20322 3.29308 3.33937 4.22194 4.27729 4.58296 4.91589 5.19422 5.33612 5.50703 5.59786 5.62568 5.68944 5.77179 5.82956 5.88955 5.92296 6.07629 6.09176 6.16615 6.22611 6.33471 6.36909 6.44959 6.53858 6.72774 6.81928 6.86566 6.99793 7.23751 7.25711 7.35673 7.66157 7.67728 7.72068 7.76435 7.96961 8.16440 8.48069 8.90386 9.39429 10.85369 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.009934 C = 0.006356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.361199 B = 2817.797855 C = 4403.948650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 H 0.059 0.941 4 C 0.024 3.976 5 N -0.533 5.533 6 C 0.224 3.776 7 H 0.053 0.947 8 C -0.496 4.496 9 H 0.063 0.937 10 C 0.068 3.932 11 N -0.886 5.886 12 Si 0.896 3.104 13 H -0.270 1.270 14 H -0.283 1.283 15 H -0.282 1.282 16 C -0.025 4.025 17 C -0.102 4.102 18 C -0.133 4.133 19 C -0.152 4.152 20 C -0.128 4.128 21 C -0.125 4.125 22 C 0.040 3.960 23 C 0.063 3.937 24 O -0.393 6.393 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.264 0.736 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.032 0.968 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.903 6.582 1.075 8.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 H 0.077 0.923 4 C -0.105 4.105 5 N -0.258 5.258 6 C 0.119 3.881 7 H 0.071 0.929 8 C -0.534 4.534 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.523 5.523 12 Si 0.723 3.277 13 H -0.194 1.194 14 H -0.209 1.209 15 H -0.208 1.208 16 C -0.026 4.026 17 C -0.120 4.120 18 C -0.151 4.151 19 C -0.170 4.170 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.088 4.088 23 C -0.014 4.014 24 O -0.312 6.312 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.050 0.950 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.827 6.770 1.209 9.014 hybrid contribution 0.988 -0.979 -0.476 1.469 sum -4.840 5.791 0.733 7.583 Atomic orbital electron populations 1.21733 0.93892 1.02514 1.01839 1.22092 0.93850 0.95430 0.85350 0.92340 1.22703 0.91268 0.98954 0.97609 1.62516 1.05208 1.54300 1.03797 1.18617 0.95565 0.91512 0.82442 0.92868 1.20927 0.90230 0.93941 1.48327 0.91851 1.25037 0.98633 0.95756 0.94212 1.69902 1.35265 0.98667 1.48492 0.86467 0.85081 0.78381 0.77764 1.19419 1.20880 1.20812 1.20476 0.91620 0.93923 0.96567 1.20988 0.99483 0.93845 0.97733 1.21041 1.01090 0.98934 0.94048 1.20831 1.03376 0.94873 0.97926 1.20951 1.01665 0.94002 0.97998 1.21070 1.00213 0.99572 0.93531 1.22395 1.02333 0.95073 0.88983 1.22747 0.80367 0.99926 0.98337 1.87871 1.21861 1.78674 1.42814 0.92165 0.91338 0.92267 0.95262 0.90836 0.92579 0.86184 0.87521 0.87664 0.87490 0.86829 0.94977 0.88531 0.89586 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.57 37.16 0.36 -1.56 16 2 C 0.09 1.51 3.42 -26.68 -0.09 1.42 16 3 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.02 0.45 4.71 -3.71 -0.02 0.43 16 5 N -0.53 -11.30 4.05 -229.11 -0.93 -12.23 16 6 C 0.22 5.33 1.99 -70.01 -0.14 5.19 16 7 H 0.05 1.44 6.72 -51.93 -0.35 1.10 16 8 C -0.50 -12.78 6.60 -34.44 -0.23 -13.00 16 9 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 10 C 0.07 1.77 5.45 -17.82 -0.10 1.67 16 11 N -0.89 -24.25 12.62 55.43 0.70 -23.55 16 12 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 16 C -0.02 -0.54 3.65 -104.62 -0.38 -0.92 16 17 C -0.10 -2.04 9.03 -39.58 -0.36 -2.40 16 18 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 19 C -0.15 -2.55 10.05 -39.58 -0.40 -2.95 16 20 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 21 C -0.13 -2.61 9.67 -39.58 -0.38 -2.99 16 22 C 0.04 0.84 5.31 -3.71 -0.02 0.82 16 23 C 0.06 1.09 7.01 37.21 0.26 1.36 16 24 O -0.39 -7.12 10.47 -35.23 -0.37 -7.48 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.38 6.98 -51.93 -0.36 1.02 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.12 2.42 7.89 -52.49 -0.41 2.01 16 32 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.11 2.43 8.00 -52.49 -0.42 2.01 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 2.13 6.79 -51.93 -0.35 1.78 16 38 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -27.41 316.38 -9.24 -36.65 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.09 Total: 4.68 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.29 Total: -18.36 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.23 Total: -35.78 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.37 Total: -7.48 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.41 -9.24 -36.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251600959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.679 kcal (2) G-P(sol) polarization free energy of solvation -27.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds