Wall clock time and date at job start Mon Mar 30 2020 06:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.50322 * 2 1 4 4 C 1.53095 * 109.50809 * 239.91892 * 2 1 3 5 5 N 1.47014 * 109.25795 * 183.21479 * 4 2 1 6 6 C 1.46906 * 110.99983 * 182.39117 * 5 4 2 7 7 H 1.09005 * 109.47034 * 303.97642 * 6 5 4 8 8 C 1.50700 * 109.47217 * 183.97758 * 6 5 4 9 9 H 1.07999 * 119.99821 * 305.33100 * 8 6 5 10 10 C 1.37878 * 120.00126 * 125.32435 * 8 6 5 11 11 N 1.31513 * 119.99729 * 354.86879 * 10 8 6 12 12 Si 1.86801 * 119.99984 * 174.86237 * 10 8 6 13 13 H 1.48497 * 109.46854 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46669 * 120.00376 * 12 10 8 15 15 H 1.48494 * 109.47366 * 240.00395 * 12 10 8 16 16 C 1.50699 * 109.46948 * 63.97511 * 6 5 4 17 17 C 1.38234 * 119.99938 * 45.51713 * 16 6 5 18 18 C 1.38239 * 119.99750 * 179.78532 * 17 16 6 19 19 C 1.38236 * 120.00163 * 0.43790 * 18 17 16 20 20 C 1.38238 * 119.99983 * 359.81306 * 19 18 17 21 21 C 1.38237 * 119.99861 * 225.77884 * 16 6 5 22 22 C 1.47013 * 110.75386 * 58.61678 * 5 4 2 23 23 C 1.53103 * 109.25344 * 301.38269 * 22 5 4 24 24 O 1.43009 * 109.50974 * 120.08880 * 2 1 3 25 25 H 1.09001 * 109.46899 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47210 * 60.00216 * 1 2 3 27 27 H 1.08998 * 109.47327 * 299.99404 * 1 2 3 28 28 H 1.09006 * 109.50567 * 303.14903 * 4 2 1 29 29 H 1.09004 * 109.51174 * 63.23372 * 4 2 1 30 30 H 0.97001 * 119.99513 * 179.97438 * 11 10 8 31 31 H 1.07999 * 120.00022 * 359.97438 * 17 16 6 32 32 H 1.07994 * 119.99805 * 180.27233 * 18 17 16 33 33 H 1.07997 * 120.00555 * 179.83352 * 19 18 17 34 34 H 1.07993 * 120.00478 * 180.02562 * 20 19 18 35 35 H 1.08002 * 119.99950 * 359.97438 * 21 16 6 36 36 H 1.08999 * 109.50946 * 61.31427 * 22 5 4 37 37 H 1.08994 * 109.50491 * 181.44998 * 22 5 4 38 38 H 1.09003 * 109.50182 * 176.78196 * 23 22 5 39 39 H 1.09002 * 109.50845 * 296.86745 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7233 -1.2487 5 7 3.5093 -0.7878 -1.2048 6 6 4.0447 -1.4257 -2.4150 7 1 3.5983 -2.4131 -2.5331 8 6 5.5404 -1.5622 -2.2911 9 1 6.1463 -0.6933 -2.0805 10 6 6.1353 -2.7963 -2.4466 11 7 5.3917 -3.8697 -2.6023 12 14 7.9975 -2.9434 -2.4362 13 1 8.5991 -1.5992 -2.2461 14 1 8.4173 -3.8349 -1.3252 15 1 8.4562 -3.5132 -3.7284 16 6 3.7154 -0.5785 -3.6170 17 6 3.9085 0.7896 -3.5722 18 6 3.6106 1.5661 -4.6764 19 6 3.1109 0.9758 -5.8221 20 6 2.9129 -0.3916 -5.8651 21 6 3.2150 -1.1688 -4.7624 22 6 3.9640 -1.4883 0.0051 23 6 3.4335 -0.7572 1.2413 24 8 2.0076 -0.6758 1.1663 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5137 0.8900 28 1 1.6332 -1.7337 -1.2767 29 1 1.7267 -0.1790 -2.1392 30 1 5.8102 -4.7379 -2.7120 31 1 4.2951 1.2513 -2.6757 32 1 3.7656 2.6344 -4.6429 33 1 2.8756 1.5828 -6.6838 34 1 2.5229 -0.8530 -6.7603 35 1 3.0605 -2.2372 -4.7961 36 1 3.5867 -2.5109 -0.0028 37 1 5.0536 -1.5019 0.0300 38 1 3.7201 -1.3050 2.1390 39 1 3.8540 0.2477 1.2783 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251600959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:45 Heat of formation + Delta-G solvation = -35.804356 kcal Electronic energy + Delta-G solvation = -20326.362805 eV Core-core repulsion = 17425.874062 eV Total energy + Delta-G solvation = -2900.488743 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.77113 -39.63352 -36.93808 -34.50706 -33.62359 -32.33181 -31.54984 -29.22050 -28.70636 -26.03584 -24.80212 -23.34731 -23.02252 -21.59456 -21.01059 -18.54106 -17.53213 -17.27832 -17.17350 -16.44127 -15.99264 -15.92469 -15.62208 -15.40839 -14.99882 -14.63190 -14.10683 -13.91051 -13.72445 -13.48712 -13.24638 -13.07323 -12.93278 -12.82704 -12.62225 -12.28101 -12.16044 -12.03119 -11.84456 -11.62834 -11.24912 -11.17353 -10.74318 -10.43751 -9.61347 -9.34157 -9.03461 -8.19852 -6.31002 0.70130 0.75375 1.35849 1.38540 1.50009 2.35283 2.83558 2.95938 3.23281 3.36737 3.94710 4.18008 4.22123 4.24172 4.27060 4.31125 4.37182 4.44291 4.58354 4.62441 4.69559 4.77414 4.80208 4.88894 4.92927 5.01412 5.12161 5.18764 5.27292 5.29393 5.39045 5.44652 5.64134 5.77494 5.79981 5.99188 6.05956 6.26941 6.32334 6.39699 6.68154 6.88412 7.35484 8.84646 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.009934 C = 0.006356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.361199 B = 2817.797855 C = 4403.948650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.091 3.909 3 H 0.069 0.931 4 C 0.029 3.971 5 N -0.528 5.528 6 C 0.231 3.769 7 H 0.006 0.994 8 C -0.500 4.500 9 H 0.055 0.945 10 C 0.020 3.980 11 N -0.921 5.921 12 Si 0.955 3.045 13 H -0.264 1.264 14 H -0.278 1.278 15 H -0.282 1.282 16 C -0.051 4.051 17 C -0.113 4.113 18 C -0.125 4.125 19 C -0.140 4.140 20 C -0.124 4.124 21 C -0.150 4.150 22 C 0.044 3.956 23 C 0.072 3.928 24 O -0.401 6.401 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.004 0.996 29 H 0.076 0.924 30 H 0.263 0.737 31 H 0.113 0.887 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.135 0.865 35 H 0.090 0.910 36 H -0.002 1.002 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 9.385 0.463 11.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.034 3.966 3 H 0.087 0.913 4 C -0.100 4.100 5 N -0.253 5.253 6 C 0.125 3.875 7 H 0.024 0.976 8 C -0.538 4.538 9 H 0.073 0.927 10 C -0.180 4.180 11 N -0.560 5.560 12 Si 0.780 3.220 13 H -0.188 1.188 14 H -0.204 1.204 15 H -0.208 1.208 16 C -0.052 4.052 17 C -0.131 4.131 18 C -0.142 4.142 19 C -0.158 4.158 20 C -0.142 4.142 21 C -0.169 4.169 22 C -0.085 4.085 23 C -0.005 4.005 24 O -0.320 6.320 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.022 0.978 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.153 0.847 35 H 0.108 0.892 36 H 0.016 0.984 37 H 0.097 0.903 38 H 0.128 0.872 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.260 9.590 0.605 11.469 hybrid contribution 1.046 -1.791 -0.353 2.104 sum -5.214 7.799 0.251 9.385 Atomic orbital electron populations 1.21735 0.91170 1.02710 1.03737 1.22251 0.95955 0.95087 0.83354 0.91280 1.22734 0.89680 0.98013 0.99528 1.62513 1.06673 1.53142 1.02997 1.18356 0.94421 0.90169 0.84559 0.97590 1.21080 0.91389 0.93568 1.47797 0.92677 1.25742 1.02552 0.95481 0.94217 1.70045 1.36771 0.99000 1.50198 0.85549 0.80343 0.78456 0.77645 1.18778 1.20387 1.20811 1.20320 0.93997 0.94866 0.95979 1.20973 1.00287 0.93013 0.98841 1.21418 0.99316 1.00501 0.93008 1.21306 1.01134 0.94476 0.98871 1.21259 1.00575 0.94709 0.97674 1.21061 1.02044 0.98951 0.94843 1.22373 1.01283 0.93983 0.90846 1.22738 0.80177 1.00451 0.97106 1.87877 1.21960 1.78971 1.43201 0.92856 0.89440 0.90346 0.97773 0.90535 0.92770 0.86850 0.83952 0.83435 0.84718 0.89196 0.98402 0.90295 0.87219 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.57 71.98 0.69 -2.71 16 2 C 0.09 2.94 3.42 30.63 0.10 3.05 16 3 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 4 C 0.03 1.14 4.71 86.31 0.41 1.55 16 5 N -0.53 -23.31 4.05 -878.77 -3.56 -26.87 16 6 C 0.23 11.64 1.99 43.42 0.09 11.73 16 7 H 0.01 0.36 6.72 -2.38 -0.02 0.35 16 8 C -0.50 -26.92 6.60 25.60 0.17 -26.75 16 9 H 0.05 2.99 7.82 -2.91 -0.02 2.97 16 10 C 0.02 1.10 5.45 84.66 0.46 1.56 16 11 N -0.92 -53.35 12.62 21.45 0.27 -53.08 16 12 Si 0.95 43.34 29.54 68.60 2.03 45.36 16 13 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 16 C -0.05 -2.27 3.65 -19.87 -0.07 -2.35 16 17 C -0.11 -4.41 9.03 22.27 0.20 -4.21 16 18 C -0.12 -3.93 10.05 22.27 0.22 -3.71 16 19 C -0.14 -4.13 10.05 22.27 0.22 -3.91 16 20 C -0.12 -4.20 10.05 22.27 0.22 -3.98 16 21 C -0.15 -6.41 9.67 22.27 0.22 -6.19 16 22 C 0.04 1.90 5.31 86.32 0.46 2.36 16 23 C 0.07 2.46 7.01 72.02 0.50 2.96 16 24 O -0.40 -14.12 10.47 -148.98 -1.56 -15.68 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 29 H 0.08 2.92 6.98 -2.38 -0.02 2.90 16 30 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.11 4.51 7.89 -2.91 -0.02 4.49 16 32 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 33 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.09 4.14 8.00 -2.91 -0.02 4.12 16 36 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.08 3.66 6.79 -2.39 -0.02 3.65 16 38 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -62.67 316.38 2.08 -60.59 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 1.01 Total: 20.28 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 3.90 Total: -30.59 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -3.29 Total: -79.96 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -1.56 Total: -15.68 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -62.67 2.08 -60.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251600959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.785 kcal (2) G-P(sol) polarization free energy of solvation -62.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds