Wall clock time and date at job start Mon Mar 30 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.54303 * 2 1 4 4 C 1.53091 * 109.50883 * 120.10968 * 2 1 3 5 5 O 1.43014 * 109.26432 * 176.78641 * 4 2 1 6 6 C 1.43019 * 113.73346 * 301.32744 * 5 4 2 7 7 C 1.53096 * 109.25840 * 58.66831 * 6 5 4 8 8 N 1.47016 * 109.25994 * 303.14959 * 7 6 5 9 9 C 1.46901 * 110.99990 * 182.39373 * 8 7 6 10 10 H 1.09004 * 109.46736 * 282.07096 * 9 8 7 11 11 C 1.50701 * 109.46813 * 162.07978 * 9 8 7 12 12 H 1.07994 * 120.00363 * 331.09954 * 11 9 8 13 13 C 1.37881 * 119.99982 * 151.10432 * 11 9 8 14 14 N 1.31512 * 119.99908 * 170.52486 * 13 11 9 15 15 Si 1.86798 * 119.99920 * 350.52790 * 13 11 9 16 16 H 1.48498 * 109.47206 * 86.87928 * 15 13 11 17 17 H 1.48499 * 109.47311 * 206.87914 * 15 13 11 18 18 H 1.48503 * 109.47238 * 326.88232 * 15 13 11 19 19 C 1.50697 * 109.47522 * 42.07405 * 9 8 7 20 20 C 1.38233 * 120.00093 * 226.30543 * 19 9 8 21 21 C 1.38237 * 119.99647 * 179.97438 * 20 19 9 22 22 C 1.38238 * 120.00166 * 359.97438 * 21 20 19 23 23 C 1.38233 * 119.99742 * 0.27976 * 22 21 20 24 24 C 1.38234 * 119.99565 * 46.28358 * 19 9 8 25 25 H 1.09001 * 109.47015 * 168.89574 * 1 2 3 26 26 H 1.09000 * 109.46824 * 288.89470 * 1 2 3 27 27 H 1.09005 * 109.46972 * 48.89577 * 1 2 3 28 28 H 1.09000 * 109.50659 * 56.84597 * 4 2 1 29 29 H 1.09005 * 109.54293 * 296.73661 * 4 2 1 30 30 H 1.09000 * 109.50737 * 298.73656 * 6 5 4 31 31 H 1.09001 * 109.54401 * 178.62550 * 6 5 4 32 32 H 1.09007 * 109.50888 * 183.21726 * 7 6 5 33 33 H 1.08999 * 109.50835 * 63.08535 * 7 6 5 34 34 H 0.97001 * 119.99835 * 179.97438 * 14 13 11 35 35 H 1.07997 * 119.99896 * 359.97438 * 20 19 9 36 36 H 1.08001 * 119.99529 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.99826 * 180.02562 * 22 21 20 38 38 H 1.08005 * 120.00035 * 179.72646 * 23 22 21 39 39 H 1.08000 * 120.00286 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7239 1.2483 5 8 3.4694 -0.7867 1.2057 6 6 3.9819 -1.4578 0.0514 7 6 3.4903 -0.7414 -1.2091 8 7 2.0209 -0.6952 -1.1988 9 6 1.5054 -0.0645 -2.4213 10 1 1.6105 1.0177 -2.3438 11 6 0.0503 -0.4168 -2.5931 12 1 -0.3292 -1.3496 -2.2030 13 6 -0.7966 0.4517 -3.2484 14 7 -2.0151 0.0699 -3.5633 15 14 -0.2133 2.1707 -3.6890 16 1 0.4752 2.1379 -5.0043 17 1 -1.3807 3.0855 -3.7641 18 1 0.7293 2.6554 -2.6489 19 6 2.2864 -0.5612 -3.6106 20 6 2.7481 0.3342 -4.5572 21 6 3.4650 -0.1215 -5.6478 22 6 3.7205 -1.4724 -5.7915 23 6 3.2542 -2.3683 -4.8476 24 6 2.5414 -1.9122 -3.7546 25 1 -0.3633 -1.0084 -0.1979 26 1 -0.3633 0.3328 0.9723 27 1 -0.3633 0.6757 -0.7744 28 1 1.6332 -1.7342 1.2759 29 1 1.7274 -0.1801 2.1394 30 1 3.6302 -2.4895 0.0442 31 1 5.0715 -1.4449 0.0759 32 1 3.8312 -1.2826 -2.0918 33 1 3.8862 0.2740 -1.2285 34 1 -2.6110 0.6811 -4.0239 35 1 2.5488 1.3896 -4.4446 36 1 3.8254 0.5780 -6.3875 37 1 4.2809 -1.8283 -6.6434 38 1 3.4501 -3.4242 -4.9622 39 1 2.1813 -2.6116 -3.0147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251610878.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:58 Heat of formation + Delta-G solvation = -3.267308 kcal Electronic energy + Delta-G solvation = -20781.697779 eV Core-core repulsion = 17882.619948 eV Total energy + Delta-G solvation = -2899.077831 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.64055 -38.26560 -35.69008 -32.65444 -32.30039 -30.72257 -30.17036 -27.95434 -26.96242 -24.77415 -22.62970 -22.28026 -21.72368 -20.24218 -19.20976 -17.01893 -16.30071 -15.82598 -15.72628 -14.97651 -14.46523 -14.37657 -14.26345 -14.03479 -13.62331 -13.07448 -12.85395 -12.56714 -12.37329 -12.14023 -11.78720 -11.38393 -11.33724 -11.06727 -10.80889 -10.73403 -10.49666 -10.41015 -10.16011 -10.08051 -9.84703 -9.36216 -9.17043 -8.57661 -8.24409 -7.86722 -7.46444 -6.21114 -4.11465 2.04169 2.08573 3.18120 3.23657 3.27690 4.20308 4.28087 4.38658 4.65942 5.08023 5.36140 5.48683 5.49458 5.50865 5.52420 5.61524 5.67726 5.71747 5.90979 5.96376 6.03311 6.18793 6.22443 6.26014 6.31107 6.34781 6.52034 6.56934 6.68534 6.75536 6.99532 7.08466 7.12000 7.39450 7.40679 7.43159 7.52201 7.70606 7.82107 7.96275 8.49795 8.89665 9.39727 10.90357 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.011461 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.519047 B = 2442.411701 C = 3760.041221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.060 3.940 3 H 0.032 0.968 4 C 0.069 3.931 5 O -0.395 6.395 6 C 0.067 3.933 7 C 0.006 3.994 8 N -0.515 5.515 9 C 0.210 3.790 10 H 0.018 0.982 11 C -0.479 4.479 12 H 0.089 0.911 13 C 0.077 3.923 14 N -0.885 5.885 15 Si 0.853 3.147 16 H -0.268 1.268 17 H -0.287 1.287 18 H -0.266 1.266 19 C -0.037 4.037 20 C -0.138 4.138 21 C -0.123 4.123 22 C -0.147 4.147 23 C -0.128 4.128 24 C -0.095 4.095 25 H 0.069 0.931 26 H 0.028 0.972 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.028 0.972 34 H 0.266 0.734 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.911 -1.413 2.744 10.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.049 4.049 3 H 0.050 0.950 4 C -0.008 4.008 5 O -0.314 6.314 6 C -0.010 4.010 7 C -0.122 4.122 8 N -0.241 5.241 9 C 0.103 3.897 10 H 0.036 0.964 11 C -0.517 4.517 12 H 0.107 0.893 13 C -0.126 4.126 14 N -0.522 5.522 15 Si 0.680 3.320 16 H -0.194 1.194 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.039 4.039 20 C -0.157 4.157 21 C -0.141 4.141 22 C -0.165 4.165 23 C -0.146 4.146 24 C -0.114 4.114 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.647 -1.754 2.825 10.204 hybrid contribution 0.263 1.801 -0.833 2.002 sum 9.910 0.047 1.992 10.108 Atomic orbital electron populations 1.21992 0.92199 1.04750 0.99837 1.22101 0.97676 0.94883 0.90265 0.94973 1.22786 0.80201 1.00378 0.97458 1.87888 1.21409 1.78691 1.43395 1.22615 0.97965 0.95682 0.84745 1.22930 0.90804 0.99452 0.99046 1.62388 1.05261 1.53976 1.02494 1.18933 0.94905 0.92579 0.83253 0.96450 1.20759 0.88877 1.06742 1.35311 0.89311 1.24882 0.94911 0.97860 0.94990 1.69878 1.06974 1.35780 1.39521 0.87217 0.78677 0.86190 0.79872 1.19369 1.21272 1.19087 1.20529 0.92094 0.93633 0.97608 1.20994 0.99784 0.99105 0.95770 1.20920 0.99860 0.95590 0.97714 1.20867 1.02624 0.93475 0.99527 1.21076 0.99650 0.98770 0.95152 1.20944 0.97509 0.95538 0.97371 0.91237 0.95294 0.89557 0.92492 0.89329 0.92660 0.89507 0.89203 0.95367 0.92407 0.87666 0.87292 0.87298 0.87053 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 7.74 37.16 0.29 -2.29 16 2 C 0.06 1.13 2.52 -67.60 -0.17 0.96 16 3 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 4 C 0.07 1.11 6.27 37.20 0.23 1.35 16 5 O -0.40 -6.65 10.83 -35.23 -0.38 -7.03 16 6 C 0.07 1.02 7.01 37.21 0.26 1.28 16 7 C 0.01 0.11 5.00 -3.71 -0.02 0.09 16 8 N -0.52 -10.27 4.11 -221.18 -0.91 -11.18 16 9 C 0.21 4.70 1.28 -70.02 -0.09 4.61 16 10 H 0.02 0.43 4.87 -51.93 -0.25 0.17 16 11 C -0.48 -12.25 5.53 -34.44 -0.19 -12.44 16 12 H 0.09 2.50 7.21 -52.49 -0.38 2.13 16 13 C 0.08 2.07 4.93 -17.82 -0.09 1.98 16 14 N -0.88 -25.42 13.96 55.43 0.77 -24.64 16 15 Si 0.85 20.48 25.43 -169.99 -4.32 16.16 16 16 H -0.27 -6.37 6.88 56.52 0.39 -5.98 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.19 6.32 56.52 0.36 -5.83 16 19 C -0.04 -0.79 3.53 -104.63 -0.37 -1.16 16 20 C -0.14 -2.79 9.00 -39.58 -0.36 -3.15 16 21 C -0.12 -2.15 10.05 -39.58 -0.40 -2.55 16 22 C -0.15 -2.39 10.05 -39.58 -0.40 -2.79 16 23 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 24 C -0.10 -1.84 7.30 -39.58 -0.29 -2.13 16 25 H 0.07 1.46 7.10 -51.93 -0.37 1.09 16 26 H 0.03 0.48 8.10 -51.93 -0.42 0.06 16 27 H 0.09 1.96 5.65 -51.93 -0.29 1.66 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.55 5.19 -51.92 -0.27 1.28 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.11 2.15 6.45 -52.49 -0.34 1.81 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 38 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 39 H 0.13 2.43 7.91 -52.49 -0.42 2.02 16 LS Contribution 298.68 15.07 4.50 4.50 Total: -1.00 -28.01 298.68 -8.06 -36.06 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.73 Total: 4.92 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -1.98 Total: -18.80 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.14 Total: -35.82 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.38 Total: -7.03 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.32 Total: 16.16 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.01 -8.06 -36.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251610878.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.797 kcal (2) G-P(sol) polarization free energy of solvation -28.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds