Wall clock time and date at job start Mon Mar 30 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.54303 * 2 1 4 4 C 1.53091 * 109.50883 * 120.10968 * 2 1 3 5 5 O 1.43014 * 109.26432 * 176.78641 * 4 2 1 6 6 C 1.43019 * 113.73346 * 301.32744 * 5 4 2 7 7 C 1.53096 * 109.25840 * 58.66831 * 6 5 4 8 8 N 1.47016 * 109.25994 * 303.14959 * 7 6 5 9 9 C 1.46901 * 110.99990 * 182.39373 * 8 7 6 10 10 H 1.09004 * 109.46736 * 282.07096 * 9 8 7 11 11 C 1.50701 * 109.46813 * 162.07978 * 9 8 7 12 12 H 1.07994 * 120.00363 * 331.09954 * 11 9 8 13 13 C 1.37881 * 119.99982 * 151.10432 * 11 9 8 14 14 N 1.31512 * 119.99908 * 170.52486 * 13 11 9 15 15 Si 1.86798 * 119.99920 * 350.52790 * 13 11 9 16 16 H 1.48498 * 109.47206 * 86.87928 * 15 13 11 17 17 H 1.48499 * 109.47311 * 206.87914 * 15 13 11 18 18 H 1.48503 * 109.47238 * 326.88232 * 15 13 11 19 19 C 1.50697 * 109.47522 * 42.07405 * 9 8 7 20 20 C 1.38233 * 120.00093 * 226.30543 * 19 9 8 21 21 C 1.38237 * 119.99647 * 179.97438 * 20 19 9 22 22 C 1.38238 * 120.00166 * 359.97438 * 21 20 19 23 23 C 1.38233 * 119.99742 * 0.27976 * 22 21 20 24 24 C 1.38234 * 119.99565 * 46.28358 * 19 9 8 25 25 H 1.09001 * 109.47015 * 168.89574 * 1 2 3 26 26 H 1.09000 * 109.46824 * 288.89470 * 1 2 3 27 27 H 1.09005 * 109.46972 * 48.89577 * 1 2 3 28 28 H 1.09000 * 109.50659 * 56.84597 * 4 2 1 29 29 H 1.09005 * 109.54293 * 296.73661 * 4 2 1 30 30 H 1.09000 * 109.50737 * 298.73656 * 6 5 4 31 31 H 1.09001 * 109.54401 * 178.62550 * 6 5 4 32 32 H 1.09007 * 109.50888 * 183.21726 * 7 6 5 33 33 H 1.08999 * 109.50835 * 63.08535 * 7 6 5 34 34 H 0.97001 * 119.99835 * 179.97438 * 14 13 11 35 35 H 1.07997 * 119.99896 * 359.97438 * 20 19 9 36 36 H 1.08001 * 119.99529 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.99826 * 180.02562 * 22 21 20 38 38 H 1.08005 * 120.00035 * 179.72646 * 23 22 21 39 39 H 1.08000 * 120.00286 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7239 1.2483 5 8 3.4694 -0.7867 1.2057 6 6 3.9819 -1.4578 0.0514 7 6 3.4903 -0.7414 -1.2091 8 7 2.0209 -0.6952 -1.1988 9 6 1.5054 -0.0645 -2.4213 10 1 1.6105 1.0177 -2.3438 11 6 0.0503 -0.4168 -2.5931 12 1 -0.3292 -1.3496 -2.2030 13 6 -0.7966 0.4517 -3.2484 14 7 -2.0151 0.0699 -3.5633 15 14 -0.2133 2.1707 -3.6890 16 1 0.4752 2.1379 -5.0043 17 1 -1.3807 3.0855 -3.7641 18 1 0.7293 2.6554 -2.6489 19 6 2.2864 -0.5612 -3.6106 20 6 2.7481 0.3342 -4.5572 21 6 3.4650 -0.1215 -5.6478 22 6 3.7205 -1.4724 -5.7915 23 6 3.2542 -2.3683 -4.8476 24 6 2.5414 -1.9122 -3.7546 25 1 -0.3633 -1.0084 -0.1979 26 1 -0.3633 0.3328 0.9723 27 1 -0.3633 0.6757 -0.7744 28 1 1.6332 -1.7342 1.2759 29 1 1.7274 -0.1801 2.1394 30 1 3.6302 -2.4895 0.0442 31 1 5.0715 -1.4449 0.0759 32 1 3.8312 -1.2826 -2.0918 33 1 3.8862 0.2740 -1.2285 34 1 -2.6110 0.6811 -4.0239 35 1 2.5488 1.3896 -4.4446 36 1 3.8254 0.5780 -6.3875 37 1 4.2809 -1.8283 -6.6434 38 1 3.4501 -3.4242 -4.9622 39 1 2.1813 -2.6116 -3.0147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251610878.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:57 Heat of formation + Delta-G solvation = -21.407432 kcal Electronic energy + Delta-G solvation = -20782.484394 eV Core-core repulsion = 17882.619948 eV Total energy + Delta-G solvation = -2899.864445 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12742 -39.65841 -37.19387 -34.59324 -33.78141 -32.26423 -31.59492 -29.55133 -28.53636 -26.33179 -24.27518 -23.72664 -23.15063 -21.76572 -20.75675 -18.98817 -17.72790 -17.32396 -17.07316 -16.52655 -16.13847 -15.79894 -15.70023 -15.53553 -15.12176 -14.88027 -14.40247 -14.08578 -14.02427 -13.65925 -13.28129 -13.02381 -12.84726 -12.72366 -12.50061 -12.22501 -12.08049 -11.99996 -11.78200 -11.66454 -11.37931 -11.19437 -10.79108 -10.41378 -9.67616 -9.35969 -9.08910 -8.29760 -6.20392 0.60219 0.65300 1.23635 1.26368 1.31237 2.27417 2.84901 2.95674 3.10182 3.18429 3.94861 4.08374 4.09693 4.14975 4.22090 4.25711 4.32339 4.36265 4.40864 4.60539 4.67237 4.75529 4.77833 4.80517 4.90279 4.94185 4.99141 5.03373 5.21783 5.28035 5.33538 5.52935 5.67693 5.71446 5.75523 5.89197 6.03325 6.17001 6.25719 6.38801 6.60647 6.76714 7.33502 8.85711 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.011461 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.519047 B = 2442.411701 C = 3760.041221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.056 3.944 3 H 0.021 0.979 4 C 0.076 3.924 5 O -0.401 6.401 6 C 0.069 3.931 7 C 0.009 3.991 8 N -0.523 5.523 9 C 0.217 3.783 10 H -0.001 1.001 11 C -0.457 4.457 12 H 0.052 0.948 13 C 0.031 3.969 14 N -0.934 5.934 15 Si 0.901 3.099 16 H -0.262 1.262 17 H -0.288 1.288 18 H -0.260 1.260 19 C -0.063 4.063 20 C -0.160 4.160 21 C -0.124 4.124 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.108 4.108 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.017 0.983 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.137 0.863 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.650 -1.994 2.378 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.053 4.053 3 H 0.039 0.961 4 C 0.000 4.000 5 O -0.320 6.320 6 C -0.007 4.007 7 C -0.119 4.119 8 N -0.249 5.249 9 C 0.109 3.891 10 H 0.016 0.984 11 C -0.496 4.496 12 H 0.070 0.930 13 C -0.168 4.168 14 N -0.574 5.574 15 Si 0.728 3.272 16 H -0.187 1.187 17 H -0.215 1.215 18 H -0.185 1.185 19 C -0.064 4.064 20 C -0.179 4.179 21 C -0.142 4.142 22 C -0.153 4.153 23 C -0.141 4.141 24 C -0.126 4.126 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.419 -2.337 2.470 12.876 hybrid contribution -0.490 1.883 -0.718 2.074 sum 11.929 -0.453 1.752 12.065 Atomic orbital electron populations 1.21790 0.93176 1.02569 1.00325 1.22189 0.96893 0.94786 0.91414 0.96107 1.22771 0.80121 1.00505 0.96653 1.87889 1.21378 1.78907 1.43809 1.22756 0.99657 0.95389 0.82939 1.22980 0.88886 0.99261 1.00735 1.62317 1.07101 1.53571 1.01862 1.18695 0.93408 0.91592 0.85362 0.98355 1.20742 0.90828 1.04654 1.33375 0.93017 1.25409 0.94945 1.00815 0.95609 1.69998 1.08355 1.36969 1.42064 0.86436 0.78137 0.82710 0.79950 1.18673 1.21484 1.18518 1.20381 0.93977 0.94770 0.97267 1.21098 1.01257 0.98617 0.96936 1.21283 0.98707 0.97048 0.97122 1.21343 1.01315 0.92662 1.00020 1.21446 0.98000 1.00725 0.93896 1.20949 0.98562 0.94573 0.98551 0.93227 0.92159 0.93082 0.92108 0.86819 0.91933 0.86438 0.88860 0.96432 0.92662 0.88702 0.84469 0.83271 0.83801 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 7.74 71.98 0.56 -4.34 16 2 C 0.06 2.12 2.52 44.92 0.11 2.23 16 3 H 0.02 0.84 8.13 -2.39 -0.02 0.82 16 4 C 0.08 2.34 6.27 72.01 0.45 2.80 16 5 O -0.40 -12.54 10.83 -148.98 -1.61 -14.15 16 6 C 0.07 1.94 7.01 72.01 0.50 2.45 16 7 C 0.01 0.32 5.00 86.31 0.43 0.75 16 8 N -0.52 -21.03 4.11 -853.67 -3.51 -24.54 16 9 C 0.22 9.96 1.28 43.42 0.06 10.01 16 10 H 0.00 -0.05 4.87 -2.38 -0.01 -0.06 16 11 C -0.46 -24.48 5.53 25.60 0.14 -24.34 16 12 H 0.05 3.10 7.21 -2.91 -0.02 3.08 16 13 C 0.03 1.72 4.93 84.66 0.42 2.14 16 14 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 15 Si 0.90 43.66 25.43 68.60 1.74 45.41 16 16 H -0.26 -12.27 6.88 99.48 0.68 -11.59 16 17 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 18 H -0.26 -12.19 6.32 99.48 0.63 -11.56 16 19 C -0.06 -2.65 3.53 -19.87 -0.07 -2.72 16 20 C -0.16 -6.34 9.00 22.27 0.20 -6.14 16 21 C -0.12 -3.97 10.05 22.27 0.22 -3.74 16 22 C -0.14 -3.84 10.05 22.27 0.22 -3.61 16 23 C -0.12 -3.75 10.05 22.27 0.22 -3.52 16 24 C -0.11 -4.07 7.30 22.27 0.16 -3.91 16 25 H 0.05 2.17 7.10 -2.39 -0.02 2.15 16 26 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 27 H 0.05 2.41 5.65 -2.38 -0.01 2.40 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.11 2.92 8.14 -2.38 -0.02 2.90 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.09 3.11 5.19 -2.38 -0.01 3.10 16 33 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.09 3.86 6.45 -2.91 -0.02 3.84 16 36 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 37 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 38 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 39 H 0.11 4.48 7.91 -2.91 -0.02 4.45 16 Total: -1.00 -63.23 298.68 1.48 -61.75 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.93 Total: 19.33 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 3.64 Total: -31.95 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -3.21 Total: -80.38 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -1.61 Total: -14.15 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.74 Total: 45.41 kcal Total: -63.23 1.48 -61.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251610878.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.338 kcal (2) G-P(sol) polarization free energy of solvation -63.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds