Wall clock time and date at job start Mon Mar 30 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.50916 * 2 1 4 4 C 1.53098 * 109.50576 * 239.91424 * 2 1 3 5 5 O 1.43111 * 109.20978 * 183.21538 * 4 2 1 6 6 C 1.43018 * 113.76027 * 58.64351 * 5 4 2 7 7 C 1.53099 * 109.25721 * 301.32933 * 6 5 4 8 8 N 1.47010 * 109.50614 * 120.08969 * 2 1 3 9 9 C 1.46902 * 111.00102 * 302.36542 * 8 2 1 10 10 H 1.09004 * 109.47404 * 318.55380 * 9 8 2 11 11 C 1.50699 * 109.47537 * 198.55193 * 9 8 2 12 12 H 1.08001 * 119.99450 * 301.74021 * 11 9 8 13 13 C 1.37871 * 120.00170 * 121.73917 * 11 9 8 14 14 N 1.31517 * 119.99779 * 174.58813 * 13 11 9 15 15 Si 1.86798 * 120.00069 * 354.59130 * 13 11 9 16 16 H 1.48502 * 109.47171 * 84.86977 * 15 13 11 17 17 H 1.48493 * 109.47125 * 204.86763 * 15 13 11 18 18 H 1.48498 * 109.47067 * 324.87046 * 15 13 11 19 19 C 1.50700 * 109.46536 * 78.54944 * 9 8 2 20 20 C 1.38237 * 120.00329 * 38.51569 * 19 9 8 21 21 C 1.38232 * 119.99894 * 179.78817 * 20 19 9 22 22 C 1.38237 * 120.00395 * 0.45857 * 21 20 19 23 23 C 1.38236 * 119.99802 * 359.76849 * 22 21 20 24 24 C 1.38234 * 120.00072 * 0.02562 * 23 22 21 25 25 H 1.09003 * 109.46990 * 300.00029 * 1 2 3 26 26 H 1.09000 * 109.47054 * 60.00088 * 1 2 3 27 27 H 1.08996 * 109.47006 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.50796 * 303.10782 * 4 2 1 29 29 H 1.09001 * 109.50786 * 63.23739 * 4 2 1 30 30 H 1.09002 * 109.50202 * 181.39813 * 6 5 4 31 31 H 1.08998 * 109.54532 * 61.28577 * 6 5 4 32 32 H 1.09007 * 109.50782 * 296.91238 * 7 6 5 33 33 H 1.09004 * 109.54389 * 176.81078 * 7 6 5 34 34 H 0.97006 * 119.99802 * 180.02562 * 14 13 11 35 35 H 1.08002 * 119.99755 * 359.97438 * 20 19 9 36 36 H 1.08001 * 119.99923 * 180.25017 * 21 20 19 37 37 H 1.07998 * 119.99803 * 179.79819 * 22 21 20 38 38 H 1.07992 * 119.99879 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.00226 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2487 5 8 3.4703 -0.7857 -1.2049 6 6 3.9827 -1.4564 -0.0504 7 6 3.4903 -0.7400 1.2099 8 7 2.0209 -0.6947 1.1990 9 6 1.5046 -0.0642 2.4212 10 1 1.5391 1.0200 2.3132 11 6 2.3514 -0.4790 3.5968 12 1 2.4603 -1.5253 3.8413 13 6 2.9872 0.4771 4.3600 14 7 3.6383 0.1247 5.4470 15 14 2.9238 2.2731 3.8501 16 1 1.6761 2.8907 4.3670 17 1 4.0987 2.9883 4.4097 18 1 2.9460 2.3681 2.3684 19 6 0.0805 -0.5013 2.6488 20 6 -0.2944 -1.8039 2.3780 21 6 -1.5998 -2.2059 2.5909 22 6 -2.5325 -1.3028 3.0657 23 6 -2.1587 0.0011 3.3321 24 6 -0.8524 0.4020 3.1233 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6337 -1.7340 -1.2763 29 1 1.7266 -0.1791 -2.1391 30 1 5.0724 -1.4420 -0.0749 31 1 3.6324 -2.4885 -0.0427 32 1 3.8857 0.2756 1.2292 33 1 3.8313 -1.2801 2.0931 34 1 4.0853 0.7975 5.9842 35 1 0.4332 -2.5084 2.0028 36 1 -1.8917 -3.2247 2.3831 37 1 -3.5530 -1.6162 3.2289 38 1 -2.8872 0.7065 3.7035 39 1 -0.5604 1.4209 3.3310 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251610880.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:59 Heat of formation + Delta-G solvation = -25.025628 kcal Electronic energy + Delta-G solvation = -20824.357738 eV Core-core repulsion = 17924.336396 eV Total energy + Delta-G solvation = -2900.021342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11618 -39.62487 -37.10656 -34.83298 -33.33124 -32.58033 -31.56076 -29.61824 -27.87880 -27.00539 -24.26310 -23.40449 -23.26948 -21.65064 -20.70631 -19.19595 -17.68405 -17.33095 -17.04241 -16.46899 -16.03009 -15.98087 -15.61058 -15.53111 -15.09277 -14.88014 -14.29382 -14.02639 -13.92381 -13.88086 -13.35417 -12.96575 -12.89503 -12.72564 -12.55218 -12.29069 -12.02374 -12.01586 -11.78073 -11.66244 -11.36931 -11.29326 -10.87527 -10.51361 -9.58209 -9.18013 -9.08566 -8.40397 -6.40639 0.69147 0.76380 1.18455 1.21942 1.27907 2.18782 2.78242 2.98007 3.19176 3.21019 3.92370 4.14154 4.14955 4.19786 4.23948 4.30901 4.34435 4.41420 4.47743 4.56561 4.66256 4.73190 4.77553 4.86717 4.93102 4.96062 5.06803 5.14675 5.17058 5.28349 5.35109 5.39211 5.45457 5.77860 5.82506 5.97842 6.05589 6.18666 6.28042 6.38329 6.58444 6.67232 7.22186 8.75511 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.012024 C = 0.007653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.513628 B = 2328.093273 C = 3657.627920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.037 3.963 3 H 0.015 0.985 4 C 0.075 3.925 5 O -0.404 6.404 6 C 0.070 3.930 7 C 0.038 3.962 8 N -0.524 5.524 9 C 0.215 3.785 10 H 0.004 0.996 11 C -0.489 4.489 12 H 0.044 0.956 13 C 0.033 3.967 14 N -0.930 5.930 15 Si 0.920 3.080 16 H -0.263 1.263 17 H -0.282 1.282 18 H -0.268 1.268 19 C -0.034 4.034 20 C -0.109 4.109 21 C -0.123 4.123 22 C -0.141 4.141 23 C -0.120 4.120 24 C -0.158 4.158 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.004 0.996 33 H 0.081 0.919 34 H 0.268 0.732 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.825 -1.338 -10.925 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 H 0.033 0.967 4 C -0.002 4.002 5 O -0.323 6.323 6 C -0.006 4.006 7 C -0.091 4.091 8 N -0.249 5.249 9 C 0.108 3.892 10 H 0.022 0.978 11 C -0.528 4.528 12 H 0.063 0.937 13 C -0.167 4.167 14 N -0.569 5.569 15 Si 0.746 3.254 16 H -0.187 1.187 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.035 4.035 20 C -0.128 4.128 21 C -0.141 4.141 22 C -0.158 4.158 23 C -0.138 4.138 24 C -0.177 4.177 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.084 0.916 32 H 0.023 0.977 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.759 -1.673 -10.934 14.109 hybrid contribution 0.779 1.814 0.827 2.141 sum -7.979 0.141 -10.107 12.878 Atomic orbital electron populations 1.22067 0.92608 1.02957 1.02337 1.22432 0.97403 0.95018 0.92322 0.96711 1.22809 0.80076 1.00664 0.96630 1.87897 1.21805 1.78980 1.43608 1.22766 0.99397 0.95475 0.83002 1.22501 0.88737 0.98378 0.99466 1.62437 1.07842 1.52983 1.01650 1.18632 0.90509 0.91706 0.88350 0.97826 1.20812 1.27580 0.93957 1.10420 0.93731 1.25641 0.94664 1.01926 0.94494 1.69990 1.35652 1.35556 1.15742 0.86153 0.78571 0.81945 0.78715 1.18746 1.20833 1.19319 1.19992 0.93995 0.94526 0.95015 1.20897 0.96330 0.95263 1.00294 1.21390 0.92917 1.00317 0.99479 1.21288 1.00371 0.93179 1.01011 1.21226 0.95169 0.97293 1.00117 1.21007 0.94550 0.99071 1.03055 0.92571 0.90729 0.91331 0.91542 0.86717 0.87324 0.91647 0.97746 0.90043 0.92245 0.86954 0.84325 0.83689 0.84515 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 7.83 71.98 0.56 -3.77 16 2 C 0.04 1.30 2.48 44.93 0.11 1.41 16 3 H 0.01 0.58 8.12 -2.39 -0.02 0.56 16 4 C 0.07 2.18 6.30 72.01 0.45 2.63 16 5 O -0.40 -13.39 10.83 -148.98 -1.61 -15.01 16 6 C 0.07 2.31 7.01 72.02 0.50 2.81 16 7 C 0.04 1.56 5.04 86.31 0.43 1.99 16 8 N -0.52 -21.37 3.67 -853.66 -3.13 -24.51 16 9 C 0.21 9.90 1.55 43.42 0.07 9.97 16 10 H 0.00 0.20 4.35 -2.38 -0.01 0.19 16 11 C -0.49 -26.74 6.60 25.60 0.17 -26.57 16 12 H 0.04 2.73 8.05 -2.91 -0.02 2.71 16 13 C 0.03 1.84 5.47 84.65 0.46 2.31 16 14 N -0.93 -56.02 13.96 21.45 0.30 -55.72 16 15 Si 0.92 44.33 27.03 68.60 1.85 46.19 16 16 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.27 -12.74 6.68 99.48 0.66 -12.08 16 19 C -0.03 -1.41 2.44 -19.86 -0.05 -1.46 16 20 C -0.11 -4.05 7.62 22.27 0.17 -3.88 16 21 C -0.12 -3.70 10.05 22.27 0.22 -3.48 16 22 C -0.14 -3.89 10.05 22.27 0.22 -3.67 16 23 C -0.12 -3.70 10.05 22.27 0.22 -3.48 16 24 C -0.16 -6.04 8.46 22.27 0.19 -5.85 16 25 H 0.06 1.92 4.48 -2.39 -0.01 1.91 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.07 2.03 6.94 -2.39 -0.02 2.01 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 33 H 0.08 3.80 6.55 -2.38 -0.02 3.78 16 34 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 35 H 0.11 4.33 7.67 -2.91 -0.02 4.31 16 36 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 37 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 39 H 0.10 3.81 8.05 -2.91 -0.02 3.79 16 Total: -1.00 -63.58 302.86 2.13 -61.45 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.98 Total: 18.62 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 3.75 Total: -31.02 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -2.83 Total: -80.23 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -1.61 Total: -15.01 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.85 Total: 46.19 kcal Total: -63.58 2.13 -61.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251610880.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.423 kcal (2) G-P(sol) polarization free energy of solvation -63.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds